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InterPro: IPR000173 Glyceraldehyde 3-phosphate dehydrogenase subfamily

Protein matchesHelp
UniProtKB
Matches:
8351 proteins
AccessionHelp IPR000173 GlycerAld_3-P_DH_subfam
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR020831 Glyceraldehyde 3-phosphate dehydrogenase family
Children IPR006422 D-erythrose-4-phosphate dehydrogenase
IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I
Contains IPR016040 NAD(P)-binding domain
IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site
IPR020832 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup
GO Term annotationHelp
Process GO:0006006 glucose metabolic process
GO:0055114 oxidation reduction
Function GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
GO:0051287 NAD or NADH binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [1] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain [2]. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme [2].

GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis [3]. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself.

GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins [4].

Structural linksHelp
PDB - click here
SCOP: c.2.1.3 , d.81.1.1
Database linksHelp
PDBe-motif: PS00071
Enzyme: EC:1.2.1
PROSITE doc: PDOC00069
PANDIT: PF00044 , PF02800
Blocks: IPB000173

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR000173 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O14556 Glyceraldehyde-3-phosphate dehydrogenase, testis-specific

P00358 Glyceraldehyde-3-phosphate dehydrogenase 2

P04970 Glyceraldehyde-3-phosphate dehydrogenase 1

P07486 Glyceraldehyde-3-phosphate dehydrogenase 1

P16858 Glyceraldehyde-3-phosphate dehydrogenase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
IPR016040 NAD(P)-binding domain
IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I
IPR020831 Glyceraldehyde 3-phosphate dehydrogenase family
IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site
IPR000173 Glyceraldehyde 3-phosphate dehydrogenase subfamily
IPR020832 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup
SWISS-MODEL
PDB Chain
ModBase

PublicationsHelp
1. Huang XY, Barrios LA, Vonkhorporn P, Honda S, Albertson DG, Hecht RM.
Genomic organization of the glyceraldehyde-3-phosphate dehydrogenase gene family of Caenorhabditis elegans.
J. Mol. Biol. 206 411-24 1989 [PubMed: 2716055]
http://dx.doi.org/10.1016/0022-2836(89)90490-7
2. Dugaiczyk A, Haron JA, Stone EM, Dennison OE, Rothblum KN, Schwartz RJ.
Cloning and sequencing of a deoxyribonucleic acid copy of glyceraldehyde-3-phosphate dehydrogenase messenger ribonucleic acid isolated from chicken muscle.
Biochemistry 22 1605-13 1983 [PubMed: 6303388]
http://dx.doi.org/10.1021/bi00276a013
3. Berry MD, Boulton AA.
Glyceraldehyde-3-phosphate dehydrogenase and apoptosis.
J. Neurosci. Res. 60 150-4 2000 [PubMed: 10740219]
http://dx.doi.org/10.1002/(SICI)1097-4547(20000415)60:2<150::AID-JNR3>3.3.CO;2-W
4. Tatton W, Chalmers-Redman R, Tatton N.
Neuroprotection by deprenyl and other propargylamines: glyceraldehyde-3-phosphate dehydrogenase rather than monoamine oxidase B.
110 509-15 2003 [PubMed: 12721812]
http://dx.doi.org/10.1007/s00702-002-0827-z

Additional ReadingHelp
Camara-Artigas A, Hirasawa M, Knaff DB, Wang M, Allen JP.
Crystallization and structural analysis of GADPH from Spinacia oleracea in a new form.
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 62 2006 1087-92 [PubMed: 17077485]
Frayne J, Taylor A, Cameron G, Hadfield AT.
Structure of Insoluble Rat Sperm Glyceraldehyde-3-phosphate Dehydrogenase (GAPDH) via Heterotetramer Formation with Escherichia coli GAPDH Reveals Target for Contraceptive Design.
J. Biol. Chem. 284 2009 22703-12 [PubMed: 19542219]
http://dx.doi.org/10.1074/jbc.M109.004648
Fermani S, Sparla F, Falini G, Martelli PL, Casadio R, Pupillo P, Ripamonti A, Trost P.
Molecular mechanism of thioredoxin regulation in photosynthetic A2B2-glyceraldehyde-3-phosphate dehydrogenase.
Proc. Natl. Acad. Sci. U.S.A. 104 2007 11109-14 [PubMed: 17573533]
http://dx.doi.org/10.1073/pnas.0611636104
Moniot S, Bruno S, Vonrhein C, Didierjean C, Boschi-Muller S, Vas M, Bricogne G, Branlant G, Mozzarelli A, Corbier C.
Trapping of the thioacylglyceraldehyde-3-phosphate dehydrogenase intermediate from Bacillus stearothermophilus. Direct evidence for a flip-flop mechanism.
J. Biol. Chem. 283 2008 21693-702 [PubMed: 18480053]
http://dx.doi.org/10.1074/jbc.M802286200
Jenkins JL, Tanner JJ.
High-resolution structure of human D-glyceraldehyde-3-phosphate dehydrogenase.
Acta Crystallogr. D Biol. Crystallogr. 62 2006 290-301 [PubMed: 16510976]
http://dx.doi.org/10.1107/S0907444905042289
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InterPro 23.1