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InterPro: IPR000106 Protein-tyrosine phosphatase/arsenate reductase

Protein matchesHelp
UniProtKB
Matches:
1698 proteins
AccessionHelp IPR000106 Tyr_phospatase/Ars_reductase
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Children IPR017867 Protein-tyrosine phosphatase, low molecular weight
GO Term annotationHelp
Process GO:0006470 protein amino acid dephosphorylation
Function GO:0004725 protein tyrosine phosphatase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; EC:3.1.3.48) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [1, 2]. The PTP superfamily can be divided into four subfamilies [3]:

  • (1) pTyr-specific phosphatases
  • (2) dual specificity phosphatases (dTyr and dSer/dThr)
  • (3) Cdc25 phosphatases (dTyr and/or dThr)
  • (4) LMW (low molecular weight) phosphatases

Based on their cellular localisation, PTPases are also classified as:

  • Receptor-like, which are transmembrane receptors that contain PTPase domains [4]
  • Non-receptor (intracellular) PTPases [5]

All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif [6]. Functional diversity between PTPases is endowed by regulatory domains and subunits.

This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [7, 8]. The structure of a LMW PTPase has been solved by X-ray crystallography [9] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture. This entry also includes the arsenate reductase arsC, bifunctional proteins that acts as a low molecular weight protein-tyrosine phosphatase and as an arsenate reductase (EC:1.20.4.), reducing arsenate [As(V)] to arsenite [As(III)] and dephosphorylating tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates. ArsC could switch between different functions in different circumstances.

Structural linksHelp
SCOP: c.44.1.1
CATH: 3.40.50.270
Database linksHelp
Enzyme: EC:3.1.3.48
Blocks: IPB000106

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR000106 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P24666 Low molecular weight phosphotyrosine protein phosphatase

P40347 Low molecular weight phosphotyrosine protein phosphatase

P82890 Low molecular weight phosphotyrosine protein phosphatase 1

Q55535 Putative low molecular weight protein-tyrosine-phosphatase slr0328

Q9D358 Low molecular weight phosphotyrosine protein phosphatase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR002115 Protein-tyrosine phosphatase, low molecular weight, mammalian
IPR017867 Protein-tyrosine phosphatase, low molecular weight
IPR000106 Protein-tyrosine phosphatase/arsenate reductase
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain
CATH Domain

PublicationsHelp
1. Denu JM, Dixon JE.
Protein tyrosine phosphatases: mechanisms of catalysis and regulation.
2 633-41 1998 [PubMed: 9818190]
http://dx.doi.org/10.1016/S1367-5931(98)80095-1
2. Paul S, Lombroso PJ.
Receptor and nonreceptor protein tyrosine phosphatases in the nervous system.
Cell. Mol. Life Sci. 60 2465-82 2003 [PubMed: 14625689]
http://dx.doi.org/10.1007/s00018-003-3123-7
3. Wang WQ, Sun JP, Zhang ZY.
An overview of the protein tyrosine phosphatase superfamily.
3 739-48 2003 [PubMed: 12678841]
http://openurl.ingenta.com/content?genre=article&issn=1568-0266&volume=3&issue=7&spage=739
4. Eswaran J, Debreczeni JE, Longman E, Barr AJ, Knapp S.
The crystal structure of human receptor protein tyrosine phosphatase kappa phosphatase domain 1.
Protein Sci. 15 1500-5 2006 [PubMed: 16672235]
http://dx.doi.org/10.1110/ps.062128706
5. Perkins LA, Johnson MR, Melnick MB, Perrimon N.
The nonreceptor protein tyrosine phosphatase corkscrew functions in multiple receptor tyrosine kinase pathways in Drosophila.
Dev. Biol. 180 63-81 1996 [PubMed: 8948575]
http://dx.doi.org/10.1006/dbio.1996.0285
6. Barford D, Das AK, Egloff MP.
The structure and mechanism of protein phosphatases: insights into catalysis and regulation.
27 133-64 1998 [PubMed: 9646865]
http://dx.doi.org/10.1146/annurev.biophys.27.1.133
7. Wo YY, McCormack AL, Shabanowitz J, Hunt DF, Davis JP, Mitchell GL, Van Etten RL.
Sequencing, cloning, and expression of human red cell-type acid phosphatase, a cytoplasmic phosphotyrosyl protein phosphatase.
J. Biol. Chem. 267 10856-65 1992 [PubMed: 1587862]
http://intl.jbc.org/cgi/reprint/267/15/10856.pdf
8. Shekels LL, Smith AJ, Van Etten RL, Bernlohr DA.
Identification of the adipocyte acid phosphatase as a PAO-sensitive tyrosyl phosphatase.
Protein Sci. 1 710-21 1992 [PubMed: 1304913]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=1304913
9. Su XD, Taddei N, Stefani M, Ramponi G, Nordlund P.
The crystal structure of a low-molecular-weight phosphotyrosine protein phosphatase.
Nature 370 575-8 1994 [PubMed: 8052313]
http://dx.doi.org/10.1038/370575a0

Additional ReadingHelp
Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley SK.
Structural genomics of protein phosphatases.
J. Struct. Funct. Genomics 8 2007 121-40 [PubMed: 18058037]
http://dx.doi.org/10.1007/s10969-007-9036-1
Wang S, Tabernero L, Zhang M, Harms E, Van Etten RL, Stauffacher CV.
Crystal structures of a low-molecular weight protein tyrosine phosphatase from Saccharomyces cerevisiae and its complex with the substrate p-nitrophenyl phosphate.
Biochemistry 39 2000 1903-14 [PubMed: 10684639]
http://dx.doi.org/10.1021/bi991348d
Logan TM, Zhou MM, Nettesheim DG, Meadows RP, Van Etten RL, Fesik SW.
Solution structure of a low molecular weight protein tyrosine phosphatase.
Biochemistry 33 1994 11087-96 [PubMed: 7727361]
http://dx.doi.org/10.1021/bi00203a005
Madhurantakam C, Rajakumara E, Mazumdar PA, Saha B, Mitra D, Wiker HG, Sankaranarayanan R, Das AK.
Crystal structure of low-molecular-weight protein tyrosine phosphatase from Mycobacterium tuberculosis at 1.9-A resolution.
J. Bacteriol. 187 2005 2175-81 [PubMed: 15743966]
http://dx.doi.org/10.1128/JB.187.6.2175-2181.2005
Gustafson CL, Stauffacher CV, Hallenga K, Van Etten RL.
Solution structure of the low-molecular-weight protein tyrosine phosphatase from Tritrichomonas foetus reveals a flexible phosphate binding loop.
Protein Sci. 14 2005 2515-25 [PubMed: 16195543]
http://dx.doi.org/10.1110/ps.051618805
Zabell AP, Schroff AD Jr, Bain BE, Van Etten RL, Wiest O, Stauffacher CV.
Crystal structure of the human B-form low molecular weight phosphotyrosyl phosphatase at 1.6-A resolution.
J. Biol. Chem. 281 2006 6520-7 [PubMed: 16253994]
http://dx.doi.org/10.1074/jbc.M506285200
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InterPro 23.1