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InterPro: IPR000073 Alpha/beta hydrolase fold-1

Protein matchesHelp
UniProtKB
Matches:
24581 proteins
AccessionHelp IPR000073 AB_hydrolase_1
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Children IPR000639 Epoxide hydrolase-like
IPR019913 Pyrimidine utilisation protein RutD
Found in IPR005945 Peptidase S33, tricorn interacting factor 1
IPR006296 Homoserine O-acetyltransferase
IPR008220 Homoserine acetyltransferase
IPR010076 BioH
IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I
IPR011287 Poly(R)-hydroxyalkanoic acid synthase, class II
IPR012020 AB-hydrolase YheT, putative
IPR016292 Epoxide hydrolase
IPR016812 Protein phosphatase methylesterase, eukaryotic
IPR017209 Uncharacterised conserved protein UCP037445, alpha/beta hydrolase
IPR017727 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, BphD
Contains IPR000952 Uncharacterised protein family UPF0017, hydrolase-like, conserved site
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

The alpha/beta hydrolase fold [1] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices [1]. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes [2].

In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [3] gathers and annotates all the published information related to gene and protein sequences of this superfamily [4].

This entry represents fold-1 of alpha/beta hydrolase.

Structural linksHelp
PDB - click here
CATH: 3.40.50.1820
Database linksHelp
PANDIT: PF00561
Blocks: IPB000073
Pfam Clan: CL0028.18

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR000073 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
A6ZRW8 Uncharacterized vacuolar membrane protein SCY_4679

O18391 Probable serine hydrolase

P07098 Gastric triacylglycerol lipase

P34914 Epoxide hydrolase 2

P41879 Uncharacterized protein F37A4.1

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR006402 HAD-superfamily hydrolase, subfamily IA, variant 3
IPR000639 Epoxide hydrolase-like
IPR005834 Haloacid dehalogenase-like hydrolase
IPR006693 AB-hydrolase-associated lipase region
IPR000073 Alpha/beta hydrolase fold-1
IPR019431 Protein of unknown function DUF2417
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain
CATH Domain

PublicationsHelp
1. Ollis DL, Cheah E, Cygler M, Dijkstra B, Frolow F, Franken SM, Harel M, Remington SJ, Silman I, Schrag J.
The alpha/beta hydrolase fold.
Protein Eng. 5 197-211 1992 [PubMed: 1409539]
http://dx.doi.org/10.1093/protein/5.3.197
2. Elmi F, Lee HT, Huang JY, Hsieh YC, Wang YL, Chen YJ, Shaw SY, Chen CJ.
Stereoselective esterase from Pseudomonas putida IFO12996 reveals alpha/beta hydrolase folds for D-beta-acetylthioisobutyric acid synthesis.
J. Bacteriol. 187 8470-6 2005 [PubMed: 16321951]
http://dx.doi.org/10.1128/JB.187.24.8470-8476.2005

Additional ReadingHelp
Mazumdar PA, Hulecki JC, Cherney MM, Garen CR, James MN.
X-ray crystal structure of Mycobacterium tuberculosis haloalkane dehalogenase Rv2579.
Biochim. Biophys. Acta 1784 2008 351-62 [PubMed: 18062934]
Lejon S, Ellis J, Valegard K.
The last step in cephalosporin C formation revealed: crystal structures of deacetylcephalosporin C acetyltransferase from Acremonium chrysogenum in complexes with reaction intermediates.
J. Mol. Biol. 377 2008 935-44 [PubMed: 18279889]
http://dx.doi.org/10.1016/j.jmb.2008.01.047
Gartler G, Kratky C, Gruber K.
Structural determinants of the enantioselectivity of the hydroxynitrile lyase from Hevea brasiliensis.
J. Biotechnol. 129 2007 87-97 [PubMed: 17250917]
http://dx.doi.org/10.1016/j.jbiotec.2006.12.009
Monincova M, Prokop Z, Vevodova J, Nagata Y, Damborsky J.
Weak activity of haloalkane dehalogenase LinB with 1,2,3-trichloropropane revealed by X-Ray crystallography and microcalorimetry.
Appl. Environ. Microbiol. 73 2007 2005-8 [PubMed: 17259360]
http://dx.doi.org/10.1128/AEM.02416-06
Schmidt A, Gruber K, Kratky C, Lamzin VS.
Atomic resolution crystal structures and quantum chemistry meet to reveal subtleties of hydroxynitrile lyase catalysis.
J. Biol. Chem. 283 2008 21827-36 [PubMed: 18524775]
http://dx.doi.org/10.1074/jbc.M801056200
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InterPro 23.1