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InterPro: IPR003107 RNA-processing protein, HAT helix

Protein matchesHelp
UniProtKB
Matches:
1234 proteins
AccessionHelp IPR003107 HAT
TypeHelp Repeat
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR008847 Suppressor of forked
IPR011990 Tetratricopeptide-like helical
GO Term annotationHelp
Process GO:0006396 RNA processing
Component GO:0005622 intracellular
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing [1]. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.

Structural linksHelp
SCOP: a.118.8.7
Database linksHelp
PANDIT: PF02184
Blocks: IPB003107
Pfam Clan: CL0020.21

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR003107 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
A7MB10 Protein RRP5 homolog

P17886 Protein crooked neck

P19735 Pre-mRNA-splicing factor 6

Q14690 Protein RRP5 homolog

Q99LI7 Cleavage stimulation factor 77 kDa subunit

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR010491 PRP1 splicing factor, N-terminal
IPR011990 Tetratricopeptide-like helical
IPR003029 Ribosomal protein S1, RNA binding domain
IPR019734 Tetratricopeptide repeat
IPR016027 Nucleic acid-binding, OB-fold-like
IPR012340 Nucleic acid-binding, OB-fold
IPR013026 Tetratricopeptide repeat-containing domain
IPR003107 RNA-processing protein, HAT helix
IPR008847 Suppressor of forked
PDB Chain
ModBase
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Preker PJ, Keller W.
The HAT helix, a repetitive motif implicated in RNA processing.
Trends Biochem. Sci. 23 15-6 1998 [PubMed: 9478129]
http://dx.doi.org/10.1016/S0968-0004(97)01156-0

Additional ReadingHelp
Bai Y, Auperin TC, Chou CY, Chang GG, Manley JL, Tong L.
Crystal structure of murine CstF-77: dimeric association and implications for polyadenylation of mRNA precursors.
Mol. Cell 25 2007 863-75 [PubMed: 17386263]
http://dx.doi.org/10.1016/j.molcel.2007.01.034
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InterPro 23.1