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InterPro: IPR002483 Splicing factor PWI

Protein matchesHelp
UniProtKB
Matches:
296 proteins
AccessionHelp IPR002483 PWI
TypeHelp Domain
SignaturesHelp
GO Term annotationHelp
Process GO:0006397 mRNA processing
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing [1]. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing [2]. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3.

The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [2].

Structural linksHelp
SCOP: a.188.1.1
CATH: 1.20.1390.10
Database linksHelp
PANDIT: PF01480

Taxonomic coverageHelp

Example proteinsHelp
A6ZV04 U1 small nuclear ribonucleoprotein component SNU71

B2RY56 RNA-binding protein 25

O43395 U4/U6 small nuclear ribonucleoprotein Prp3

Q2KIA6 U4/U6 small nuclear ribonucleoprotein Prp3

Q8WZK0 Uncharacterized RNA-binding protein C839.10

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR013881 Pre-mRNA-splicing factor 3
IPR012677 Nucleotide-binding, alpha-beta plait
IPR002483 Splicing factor PWI
IPR000504 RNA recognition motif, RNP-1
SWISS-MODEL
PDB Chain
ModBase

PublicationsHelp
1. Blencowe BJ, Ouzounis CA.
The PWI motif: a new protein domain in splicing factors.
Trends Biochem. Sci. 24 179-80 1999 [PubMed: 10322432]
http://dx.doi.org/10.1016/S0968-0004(99)01387-0
2. Szymczyna BR, Bowman J, McCracken S, Pineda-Lucena A, Lu Y, Cox B, Lambermon M, Graveley BR, Arrowsmith CH, Blencowe BJ.
Structure and function of the PWI motif: a novel nucleic acid-binding domain that facilitates pre-mRNA processing.
Genes Dev. 17 461-75 2003 [PubMed: 12600940]
http://dx.doi.org/10.1101/gad.1060403

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InterPro 23.1