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InterPro: IPR001849 Pleckstrin homology

Protein matchesHelp
UniProtKB
Matches:
8344 proteins
AccessionHelp IPR001849 Pleckstrin_homology
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Children IPR001605 Spectrin/pleckstrin-like
Found in IPR011993 Pleckstrin homology-type
IPR015482 Syntrophin
IPR015483 Gamma 1 syntrophin
IPR015721 Rho GTP exchange factor
IPR015727 Protein kinase C mu-related
IPR015743 Beta-adrenergic receptor kinase
IPR015744 Rac serine/threonine kinase
IPR015751 Rho-associated coiled-coil containing protein kinase
IPR015767 Rho GTPase activating
IPR016279 Phosphatidylinositol-4, 5-bisphosphate phosphodiesterase gamma
IPR016555 Phospholipase D, eukaryota
IPR016609 Uncharacterised conserved protein UCP013217, Opy1p
IPR017405 Citron Rho-interacting kinase
IPR020684 Rho-associated coiled-coil containing protein kinase-like
IPR020697 Tyrosine-protein kinase, non-receptor ITK/TSK
IPR020753 Tyrosine-protein kinase, non-receptor Btk
IPR020755 Tyrosine-protein kinase, non-receptor Txk/Tec
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

The 'pleckstrin homology' (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [1, 2, 3, 4, 5, 6, 7].

The function of this domain is not clear, several putative functions have been suggested:

  • binding to the beta/gamma subunit of heterotrimeric G proteins,
  • binding to lipids, e.g. phosphatidylinositol-4,5-bisphosphate,
  • binding to phosphorylated Ser/Thr residues,
  • attachment to membranes by an unknown mechanism.
  • It is possible that different PH domains have totally different ligand requirements.

    The 3D structure of several PH domains has been determined [8]. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain.

    Proteins reported to contain one more PH domains belong to the following families:

    • Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains.
    • Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family.
    • Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily.
    • Insulin Receptor Substrate 1 (IRS-1).
    • Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr.
    • Cytoskeletal proteins such as dynamin (see IPR001401), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1.
    • Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues.
    • Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w.
    • Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac.
    • Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1).
    • C. elegans protein MIG-10.
    • C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12.
    • S. cerevisiae hypothetical proteins YBR129c and YHR155w.

    Structural linksHelp
    PDB - click here
    Database linksHelp
    PROSITE doc: PDOC50003
    PANDIT: PF00169
    Blocks: IPB001849
    Pfam Clan: CL0266.5
    InteractionsHelp
    This domain has been experimentally proven to be involved in Protein:Protein interactions.
    Representative data is shown with the following example proteins:

    Taxonomic coverageHelp

    Overlapping InterPro entriesHelp
    IPR001849 Numbers of overlapping proteins Average numbers of overlapping amino acids

    Example proteinsHelp
    A2AR50 Ras-specific guanine nucleotide-releasing factor RalGPS1

    O01761 Muscle M-line assembly protein unc-89

    O14492 SH2B adapter protein 2

    P11433 Cell division control protein 24

    Q00963 Spectrin beta chain

    More proteins


    Example Proteins Key


    InterPro entry accession number/name and structure databases Colour code
    IPR001895 Guanine-nucleotide dissociation stimulator CDC25
    IPR015012 Phenylalanine zipper
    IPR013783 Immunoglobulin-like fold
    IPR000270 Octicosapeptide/Phox/Bem1p
    IPR017442 Serine/threonine-protein kinase-like domain
    IPR001715 Calponin-like actin-binding
    IPR007850 RCSD
    IPR011009 Protein kinase-like domain
    IPR008937 Ras guanine nucleotide exchange factor
    IPR008957 Fibronectin, type III-like fold
    IPR018159 Spectrin/alpha-actinin
    IPR000719 Protein kinase, catalytic domain
    IPR016343 Spectrin, beta subunit
    IPR003961 Fibronectin, type III
    IPR002017 Spectrin repeat
    IPR010481 CDC24 calponin
    IPR011993 Pleckstrin homology-type
    IPR007110 Immunoglobulin-like
    IPR003598 Immunoglobulin subtype 2
    IPR001331 Guanine-nucleotide dissociation stimulator, CDC24, conserved site
    IPR003599 Immunoglobulin subtype
    IPR016146 Calponin-homology
    IPR001849 Pleckstrin homology
    IPR000219 Dbl homology (DH) domain
    IPR001452 Src homology-3 domain
    IPR001589 Actinin-type, actin-binding, conserved site
    IPR000980 SH2 motif
    IPR001605 Spectrin/pleckstrin-like
    IPR009134 Tyrosine-protein kinase, vascular endothelial growth factor receptor (VEGFR), N-terminal
    ModBase
    SWISS-MODEL
    PDB Chain
    CATH Domain
    SCOP Domain

    PublicationsHelp
    1. Mayer BJ, Ren R, Clark KL, Baltimore D.
    A putative modular domain present in diverse signaling proteins.
    Cell 73 629-30 1993 [PubMed: 8500161]
    http://dx.doi.org/10.1016/0092-8674(93)90244-K
    2. Haslam RJ, Koide HB, Hemmings BA.
    Pleckstrin domain homology.
    Nature 363 309-10 1993 [PubMed: 8497315]
    http://dx.doi.org/10.1038/363309b0
    3. Musacchio A, Gibson T, Rice P, Thompson J, Saraste M.
    The PH domain: a common piece in the structural patchwork of signalling proteins.
    Trends Biochem. Sci. 18 343-8 1993 [PubMed: 8236453]
    http://dx.doi.org/10.1016/0968-0004(93)90071-T
    4. Gibson TJ, Hyvonen M, Musacchio A, Saraste M, Birney E.
    PH domain: the first anniversary.
    Trends Biochem. Sci. 19 349-53 1994 [PubMed: 7985225]
    http://dx.doi.org/10.1016/0968-0004(94)90108-2
    5. Pawson T.
    Protein modules and signalling networks.
    Nature 373 573-80 1995 [PubMed: 7531822]
    http://dx.doi.org/10.1038/373573a0
    6. Ingley E, Hemmings BA.
    Pleckstrin homology (PH) domains in signal transduction.
    J. Cell. Biochem. 56 436-43 1994 [PubMed: 7890802]
    http://dx.doi.org/10.1002/jcb.240560403
    7. Saraste M, Hyvonen M.
    Pleckstrin homology domains: a fact file.
    Curr. Opin. Struct. Biol. 5 403-8 1995 [PubMed: 7583640]
    http://dx.doi.org/10.1016/0959-440X(95)80104-9
    8. Riddihough G.
    More meanders and sandwiches.
    Nat. Struct. Biol. 1 755-7 1994 [PubMed: 7634082]
    http://dx.doi.org/10.1038/nsb1194-755

    Additional ReadingHelp
    Mills SJ, Komander D, Trusselle MN, Safrany ST, van Aalten DM, Potter BV.
    Novel inositol phospholipid headgroup surrogate crystallized in the pleckstrin homology domain of protein kinase Balpha.
    ACS Chem. Biol. 2 2007 242-6 [PubMed: 17432822]
    DiNitto JP, Delprato A, Gabe Lee MT, Cronin TC, Huang S, Guilherme A, Czech MP, Lambright DG.
    Structural basis and mechanism of autoregulation in 3-phosphoinositide-dependent Grp1 family Arf GTPase exchange factors.
    Mol. Cell 28 2007 569-83 [PubMed: 18042453]
    http://dx.doi.org/10.1016/j.molcel.2007.09.017
    Li J, Mao X, Dong LQ, Liu F, Tong L.
    Crystal structures of the BAR-PH and PTB domains of human APPL1.
    Structure 15 2007 525-33 [PubMed: 17502098]
    http://dx.doi.org/10.1016/j.str.2007.03.011
    Etournay R, El-Amraoui A, Bahloul A, Blanchard S, Roux I, Pezeron G, Michalski N, Daviet L, Hardelin JP, Legrain P, Petit C.
    PHR1, an integral membrane protein of the inner ear sensory cells, directly interacts with myosin 1c and myosin VIIa.
    J. Cell. Sci. 118 2005 2891-9 [PubMed: 15976448]
    http://dx.doi.org/10.1242/jcs.02424
    Lopez-Ilasaca MA, Bernabe-Ortiz JC, Na SY, Dzau VJ, Xavier RJ.
    Bioluminescence resonance energy transfer identify scaffold protein CNK1 interactions in intact cells.
    FEBS Lett. 579 2005 648-54 [PubMed: 15670823]
    http://dx.doi.org/10.1016/j.febslet.2004.12.039
    Jackson SG, Zhang Y, Haslam RJ, Junop MS.
    Structural analysis of the carboxy terminal PH domain of pleckstrin bound to D-myo-inositol 1,2,3,5,6-pentakisphosphate.
    BMC Struct. Biol. 7 2007 80 [PubMed: 18034889]
    http://dx.doi.org/10.1186/1472-6807-7-80
    Menetrey J, Perderiset M, Cicolari J, Dubois T, Elkhatib N, El Khadali F, Franco M, Chavrier P, Houdusse A.
    Structural basis for ARF1-mediated recruitment of ARHGAP21 to Golgi membranes.
    EMBO J. 26 2007 1953-62 [PubMed: 17347647]
    http://dx.doi.org/10.1038/sj.emboj.7601634
    Li H, Sanchez-Torres J, del Carpio AF, Nogales-Gonzalez A, Molina-Ortiz P, Moreno MJ, Torok K, Villalobo A.
    The adaptor Grb7 is a novel calmodulin-binding protein: functional implications of the interaction of calmodulin with Grb7.
    Oncogene 24 2005 4206-19 [PubMed: 15806159]
    http://dx.doi.org/10.1038/sj.onc.1208591
    Snyder JT, Worthylake DK, Rossman KL, Betts L, Pruitt WM, Siderovski DP, Der CJ, Sondek J.
    Structural basis for the selective activation of Rho GTPases by Dbl exchange factors.
    Nat. Struct. Biol. 9 2002 468-75 [PubMed: 12006984]
    http://dx.doi.org/10.1038/nsb796
    van Rossum DB, Patterson RL, Sharma S, Barrow RK, Kornberg M, Gill DL, Snyder SH.
    Phospholipase Cgamma1 controls surface expression of TRPC3 through an intermolecular PH domain.
    Nature 434 2005 99-104 [PubMed: 15744307]
    http://dx.doi.org/10.1038/nature03340
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