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Integr8 :
Access to complete genomes and proteomes
| e.g. "coli", "9606" |
e.g. "ras1", "P22981", "GO:0007257", "GO:mitosis" |
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The Integr8 web portal provides easy access to integrated information about deciphered genomes and their corresponding proteomes. Available data includes DNA sequences (from databases including the EMBL Nucleotide Sequence Database, Genome Reviews, and Ensembl); protein sequences (from databases including the UniProt Knowledgebase and IPI); statistical genome and proteome analysis (performed using InterPro, CluSTr, and GOA); and information about orthology, paralogy, and synteny.
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Integr8 data can also be accessed via the
Integr8 FTP site.
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IMPORTANT ANNOUNCEMENT: Integr8 closure in 2010. Last year, the EBI launched Ensembl Genomes as the next-generation interface for genome-scale data from non-vertebrate species, and over the course of 2010 the scope of that project will be expanded and Integr8 closed. Please check out Ensembl Genomes to see if it can meet your needs already; if you have questions, please mail to helpdesk AT ensemblgenomes.org.
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New to Integr8?
The user guide will show you how to make the most of the data provided
by Integr8. Alternatively,
you may choose to start
browsing the data.
We value your feedback! Please send us your comments.
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| News |
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Current Status |
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Focal Point |
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A new DAS service has been established, mapping RNA evidence for proteins present in the Integr8 proteome sets onto the protein sequence. DAS is a lightweight protocol enabling easy integration and visualisation of sequence-based annotation, and the new Integr8 service provides access to information identifying the regions of predicted protein sequences where a matching RNA molecule has been sequenced (more...)
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A complete list of Integr8 species and their proteome status can be found on the current status page of the
Integr8 documentation.
This release of Integr8
(release 120)
was built from UniProt release 2011_06
and InterPro release 32.0
and was released on Thu, Jun 2, 2011.
The summary chart below shows the types of species currently held within Integr8.
Click on the chart to browse species in Integr8 by taxonomic classification. |
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A new Focal Point article will be available soon.
See the previous Focal Point articles.
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History |
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Latest species |
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GAS top 10 |
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Funding
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Integr8 has been funded by the European Commission: from March 2006 - February 2009 under FELICS, contract number 021902 (RII3) within the Research Infrastructure Action of the FP6 "Structuring the European Research Area" Programme, and from January 2002 - June 2005 as the TEMBLOR, contract number QLRI-CT-2001-00015 under the RTD programme "Quality of Life and Management of Living Resources"
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