Publications

IntAct Publications

• The IntAct molecular interaction database in 2012. [PMID: 22121220]
  Kerrien S, Aranda B, Breuza L, Bridge A, Broackes-Carter F, Chen C, Duesbury M, Dumousseau M, Feuermann M, Hinz U, Jandrasits C, Jimenez RC, Khadake J, Mahadevan U, Masson P, Pedruzzi I, Pfeiffenberger E, Porras P, Raghunath A, Roechert B, Orchard S, Hermjakob H.
  Nucl. Acids Res. (2011) doi: 10.1093/nar/gkr1088 [Abstract] [Full Text]
• The IntAct molecular interaction database in 2010. [PMID: 19850723]
  B. Aranda, P. Achuthan, Y. Alam-Faruque, I. Armean, A. Bridge1, C. Derow, M. Feuermann, A. T. Ghanbarian, S. Kerrien, J. Khadake, J. Kerssemakers, C. Leroy, M. Menden, M. Michaut, L. Montecchi-Palazzi, S., N. Neuhauser, S. Orchard, V. Perreau, B. Roechert, K. van Eijk, and H. Hermjakob
  Nucleic Acids Research 2009; doi:10.1093/nar/gkp878 [Abstract] [Full Text]
• IntAct – Open Source Resource for Molecular Interaction Data.
  S. Kerrien; Y. Alam-Faruque; B. Aranda; I. Bancarz; A. Bridge; C. Derow; E. Dimmer; M. Feuermann; A. Friedrichsen; R. Huntley; C. Kohler; J. Khadake; C. Leroy; A. Liban; C. Lieftink; L. Montecchi-Palazzi; S. Orchard; J. Risse; K. Robbe; B. Roechert; D. Thorneycroft; Y. Zhang; R. Apweiler; H. Hermjakob
  Nucleic Acids Research 2006; doi: 10.1093/nar/gkl958 [Abstract] [Full Text]
• IntAct - an open source molecular interaction database.
  H. Hermjakob, L. Montecchi-Palazzi, C. Lewington, S. Mudali, S. Kerrien, S. Orchard, M. Vingron, B. Roechert, P. Roepstorff, A. Valencia, H. Margalit, J. Armstrong, A. Bairoch, G. Cesareni, D. Sherman, R. Apweiler.
  Nucl. Acids. Res. 2004 32: D452-D455. [Abstract] [Full Text]

Related Publications

• The HUPO PSI Molecular Interaction Format - A community standard for the representation of protein interaction data.
  Henning Hermjakob, Luisa Montecchi-Palazzi, Gary Bader, Jérôme Wojcik, Lukasz Salwinski, Arnaud Ceol, Susan Moore, Sandra Orchard, Ugis Sarkans, Christian von Mering, Bernd Roechert, Sylvain Poux, Eva Jung, Henning Mersch, Paul Kersey, Michael Lappe, Yixue Lix, Rong Zeng, Debashis Rana, Macha Nikolski, Holger Husi, Christine Brun, K. Shanker, Seth G.N. Grant, Chris Sander, Peer Bork, Weimin Zhu, Akhilesh Pandey, Alvis Brazma, Bernard Jacq, Marc Vidal, David Sherman, Pierre Legrain, Gianni Cesareni, Ioannis Xenarios, David Eisenberg, Boris Steipe, Chris Hogue, Rolf Apweiler.
  Nature Biotechnology 22, 2004: 177-183 [PubMed 14755292]
• ProViz is a tool for the visualization of protein�protein interaction networks, developed by the IntAct European project. It provides facilities for navigating in large graphs and exploring biologically relevant features, and adopts emerging standards such as GO and PSI-MI.
  Florian Iragne ,Macha Nikolski ,Bertrand Mathieu ,David Auber and David Sherman
  Bioinformatics Volume 21 Issue 2, 2005. Pages 272-274
  http://bioinformatics.oupjournals.org/cgi/content/abstract/21/2/272?eaf
• Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF, Vinod N, Bader GD, Xenarios I, Wojcik J, Sherman D, Tyers M, Salama JJ, Moore S, Ceol A, Chatr-Aryamontri A, Oesterheld M, Stümpflen V, Salwinski L, Nerothin J, Cerami E, Cusick ME, Vidal M, Gilson M, Armstrong J, Woollard P, Hogue C, Eisenberg D, Cesareni G, Apweiler R and Hermjakob H
  BMC Biology, Volume 5, 2007. Pages 44-54 [PubMed 17925023]
• PSICQUIC and PSISCORE: accessing and scoring molecular interactions
  Bruno Aranda, Hagen Blankenburg, Samuel Kerrien, Fiona S L Brinkman, Arnaud Ceol, Emilie Chautard, Jose M Dana, Javier De Las Rivas, Marine Dumousseau, Eugenia Galeota, Anna Gaulton, Johannes Goll, Robert E W Hancock, Ruth Isserlin, Rafael C Jimenez, Jules Kerssemakers, Jyoti Khadake, David J Lynn, Magali Michaut, Gavin O'Kelly, Keiichiro Ono, Sandra Orchard, Carlos Prieto, Sabry Razick, Olga Rigina, Lukasz Salwinski, Milan Simonovic, Sameer Velankar, Andrew Winter, Guanming Wu, Gary D Bader, Gianni Cesareni, Ian M Donaldson, David Eisenberg, Gerard J Kleywegt, John Overington, Sylvie Ricard-Blum, Mike Tyers, Mario Albrecht and Henning Hermjakob
  Nature Methods, Volume 8, Number 7, 2011. Pages 528-529 [PubMed 21716279]