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What is this view?

Binary interactions

In this tab, we display the list of interactions that you have selected using one of our search features. Despite the fact that our data are annotated to accurately reflect the interactions reported in scientific literature, the data is shown in this view as binary interactions. Whenever the data was reported as a co-complex involving more than two molecules, we store it as such in the IntAct database and post-process it so the portal can show it as binary interaction. This post-processing is the Spoke Expansion model (connects bait to all preys):



sourceExp

At any moment you can choose to display the expansion column in this view in order to see which interaction are spoke expanded and which are not.

Description of what has changed

  • We have added more download options to allow users to retrieve their interaction set using more standard formats such as PSI-MI XML and PSIMITAB (version 2.5, 2.6 or 2.7) but also XGMML, RDF and Biopax (level 2 and 3).
  • We have now four different table views : minimal(molecule names and interaction AC), basic (minimal + molecule links, interaction detection method, negative), standard(minimal + molecule species, confidences, publication details, experiment details), expanded (standard + more experiment details) and complete (all mitab 2.7 columns).

Configuring the view to your need"

In the header of the interaction table you will find a button: ‘Change Column Display’ that will show you all the columns/Table views available and allow you to update the current selected set.

Downloading the data into Standard formats"

In the header of the interaction table you will find a drop down list that contains all the formats currently supported when downloading the interaction data. Select one of them and click the export button next to the list. Please note that PSI-MI XML is only available when the interaction set is no bigger than 1000 interactions.

Opening the interaction details"

Clicking on the magnifying glass in the first column of the interaction table will open the details of the corresponding interaction in the Interaction Details tab, giving you access to more details of the manually curated record.

What is this view?

Browsing (Browse Tab)

This tab is meant to give you access to more content based on the currently selected set of interactions. Please note that linking to third party resources will only include up to 200 molecules , if you exceed this number you will see the warning icon (This number has been reduced to 125 molecules for mRNA expression). Now let’s look at the features available to you:

Limiting the scope of the current dataset with the Uniprot Taxonomy ontology

Allows users to browse the Uniprot Taxonomy hierarchy as a tree and select terms in order to narrow down their dataset. Once a term is selected, you are taken back to the interaction tab to review your dataset.

Limiting the scope of the current dataset with the GO ontology

Allows users to browse the GO hierarchy as a tree and select terms in order to narrow down their dataset. Once a term is selected, you are taken back to the interaction tab to review your dataset.

Limiting the scope of the current dataset with the ChEBI ontology

Allows users to browse the ChEBI hierarchy as a tree and select terms in order to narrow down their dataset. Once a term is selected, you are taken back to the interaction tab to review your dataset.

Bulk linking to third party resources by using involved proteins

  • Proteins by Reactome pathway: Sends your proteins to the Reactome SkyPainter that will show you the pathways in which these molecules are know to play a role.
  • Proteins by Chromosomal location: Sends your list of proteins to Ensembl’s Karyotype viewer and overlays the proteins on the chromosomes.
  • Proteins by mRNA expression: Sends your set of proteins to the ArrayExpress Atlas that will show the known gene expression based on experimental studies.
What is this view?

Searching Interactions (Search Tab)

As you can see in this tab we are now trying to give you more targeted choice to do your queries, please note that the examples provided in this tab are live links so you can simply click them to see the resulting interactions sets.

Using the Quick Search

In this search panel you are free to type anything that might relate to interactions, whether it is properties of their interactor (gene name, identifiers, GO term…) or more specific to the interaction like publication, authors, experimental detection method, ...

Some examples:

  • Try the query: imatinib
    This is a drug for which we have curated a number of interactions.
    Once you press the search button you should be taken to the Interaction Tab that lists 130 binary interactions.
    If you want to construct more complex queries we recommend you take a look at the Molecular Interaction Query Language, accessible from the quick search panel.
  • Try the query: species:yeast AND type:"direct interaction"
    This query selects all interactions involving yeast interactors that have been shown to have direct interactions. If you customize the column display of the interaction tab, you will see that not only “direct interaction” have been selected but also children terms in the PSI-MI ontology.

Using the Ontology Search

Open the Rearch Tab. This panel is specialised to give you an easy access to ontology search. So far you can search on 4 ontologies:

  • Gene Ontology
  • InterPro
  • PSI-MI
  • ChEBI

Whenever you start typing a query in this search panel, the system will search as you type and propose a list of matching controlled vocabulary terms. You can then select one of them and select matching interactions.

For example, type: cancer
You will be presented with a few choices, please note that each term is followed by the count of matching interactions in the IntAct database.

Select a term with the mouse or using the keyboard cursor keys and you will be taken to the interaction tab.

Searching the Compound chemical structure

In this panel you will be able to draw all or part of a chemical structure and search for chemical compounds. If you get any matched, you can then see all interactions involving them.

First you have to open up the chemical search panel so that the applet can load, it might take a few seconds. Then you can start drawing your structure, for instance:

Once you have drawn your structure, select Similarity and press Search. You should be presented with a list of matching compound. Now choose one molecule and click the link: IntAct interactions. You will be taken to the interaction tab to review the data.

Complex Expansion

Binary interactions generated by co-complex expansion

Why should you care about complex expansion ?

Some experimental methods such as Tandem Affinity Purification do generate molecular interactions that can involve more than 2 molecules. Despite the fact that IntAct curation team do capture the molecular interaction as they were reported in the corresponding experiment, when you search using the intact web site, the results of your query is always shown as set of binary interactions (i.e. 2 molecules). We would like to draw your attention on the fact that whenever the reported interaction was a co-complex we do apply an expansion algorithm that transform this n-ary interaction into a set of binary interactions. While none of these agorithms is perfect and will very likely generate some false positive interactions, it is useful to present the data in a consistent manner. Bear in mind that we will strive to differentiate in the search results which interactions are a real experimental binary from expanded ones.

Existing expansion algorithm

There are several known algorithm allowing to transform an n-ary interaction into a set of binaries. The illustration below present the two well known expansion model and illustrates why they can be incorrect.



sourceExp

  • Spoke expansion: Links the bait molecule to all prey molecules. If N is the count of molecule in the complex, it generated N-1 binary interactions.
  • Matrix expansion: Links all molecule to all other molecule present in the complex. If N is the count of molecule in the complex, it generated (N*(N-1))/2 binary interactions.

Now the issue (as illustrated at the bottom right of the diagram above) with these two models lies in the fact that the real complex might not be articulated around the experimental bait but instead, this bait might be linked to a smaller complex, hence most binary interaction generated by spoke and matrix expansion result in false positive.



PSICQUIC

How is the number of interactions in other databases obtained?

PSICQUIC is a standard way to access molecular interaction databases across which it repeats the same query. The number of databases providing data may vary, depending on the status of their services and only those that are active are used in this query. By clicking on the number of interactions you will be redirected to the PSICQUIC View, where you can browse the results in those other resources.

The services currently active are:

Check the PSICQUIC site for more information.

IMEx

What is the significance of the IMEx dataset?"

IMEx is a network of databases which have agreed to supply a non-redundant set of data expertly manually annotated to the same consistent detailed standard which, as such, represents a high-quality subset of the data each individually provides. The number of databases providing data may vary, depending on the status of their services and only those that are active are used in this query. By clicking on the number of interactions you will be redirected to the IMEx View, where you can browse the results in those other resources.

The services currently active are:

Check the IMEx site for more information.

What is this view?

Representation of Experimental Features

This section shows the graphical representation of experimental features, where each participant is represented as a white rectangle with a black border and a line for each hundredth amino acid. All available features are attached to their associated participant and their categories are represented in the right side of the legend. The left side of the legend dynamically shows the range statuses occuring in the shown interaction. These are the possible range statuses:

sourceExp

Interacting with the widget

Hover over a feature to see more information in a tooltip.
sourceExp

To display a single interacting region click on it and click again to display all interacting regions.
Displaying all interacting regionsDisplaying one interacting region
sourceExpsourceExp
What is this view?

Dynamic molecular interaction data

This section shows the graphical representation of dynamic molecular interactions. By default it displays all the interactions from one experiment using radio buttons to allow users to highlight interactions in different variable conditions.

Publication

PubMed Id: 10684247

Journal: J. Cell Biol. (0021-9525)

Year of Publication: 2000

Title: The yeast nuclear pore complex: composition, architecture, and transport mechanism.

Author List: Rout MP., Aitchison JD., Suprapto A., Hjertaas K., Zhao Y., Chait BT.

Cross References:

Database
Identifier
Secondary identifier
Qualifier
-

Experiment (1 interaction)

Accession: EBI-761896

Name: rout-2000-1

Host organism: Saccharomyces cerevisiae (Baker's yeast)

Organism: Saccharomyces cerevisiae (Baker's yeast)

Accession: EBI-140

Name: yeasx

Description: Saccharomyces cerevisiae (Baker's yeast)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
yeast
-

Interaction Detection Method: chromatography

Interaction detection method: chromatography
Accession: EBI-608487

Name: chromatography

Description: chromatography technology

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0091
-
identity


Annotations:
Topic
Text
definition
Used to separate and/or analyse complex mixtures. The components to be separated are distributed between two phases: a stationary phase (bed) and a mobile phase which percolates through the stationary bed. The nature of the two phases determines the separation criteria exploited by the column such as affinity, ionic charges, size or hydrophobicity of the molecules under analysis. Each type of column can be implemented with the mobile phase under atmospheric or high pressure condition. In this later case columns are designated as High Pressure Liquid Chromatography (HPLC).


Participant Identification Method: ms participant

Participant identification method: ms participant
Accession: EBI-608794

Name: ms participant

Description: Identification by mass spectrometry

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0427
-
identity


Annotations:
Topic
Text
definition
identification by mass spectrometry.


Cross References:

Database
Identifier
Secondary identifier
Qualifier
-

Annotations:

Topic
Text
rout@rockvax.rockefeller.edu
Table 1
Sucrose density gradient sedimentation followed by HPLC and SDS gel separation of purified components of yeast nuclear pore complex. Proteins were identified by the following complemenatary methods: MALDI-TOF peptide mapping procedure to anlayze bands from hydroxyapatite HPLC/SDS-PAGE separations, MALDI-ion trap tandem mass spectrometry of the tryptic peptides from TFA-HPLC/SDS-PAGE, peptide microsequencing analysis of prominent bands in the formic acid HPLC/SDS-PAGE separations

Interaction

Accession: EBI-761900

Name: nup60-nup170

Description: The components of the yeast nuclear pore complex and interacting proteins.

Type: physical association

Interaction type: physical association
Accession: EBI-1813147

Name: physical association

Description: physical association

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0915
-
identity


Annotations:
Topic
Text
definition
Interaction between molecules within the same physical complex. Often identified under conditions which suggest that the molecules are in close proximity but not necessarily in direct contact with each other.


Cross References:

Database
Identifier
Secondary identifier
Qualifier
nuclear pore organization and
nuclear pore

Annotations:

Topic
Text
Authors definition of a nucleoporins was one which was a constituent of the Nuclear Pore Complex (NPC) all or most of the time. Proteins which localised outside the NPC were excluded, as were proteins which failed to cofractionate with NPC's. These proteins are identified by the term Nucleoporin in the full name of the protein.

Participants (57)

Legend:
A
Annotation and Cross Reference  
P
Experimental Parameter   
S
Stoichiometry   
F
Experimental Feature
C
Participant Confidence
pp123pp
#
Name
Links
Primary Identifier
Aliases
Description
Species
Expression system
Experimental role
Biological role
Interactor type
More...
pp123pp
1
EBI-4259
 logo
dastyLogo
Nucleoporin CDC31
Nuclear pore protein CDC31
YOR257W

[+2]
Cell division control protein 31
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Cell division control protein 31

Participant: Cell division control protein 31

Accession: EBI-761901

Name: EBI-4259

P
Participant: Cell division control protein 31

Participant: Cell division control protein 31

Accession: EBI-761901

Name: EBI-4259

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Cell division control protein 31

Participant: Cell division control protein 31

Accession: EBI-761901

Name: EBI-4259

Stoichiometry: 0.0

F
Participant: Cell division control protein 31

Participant: Cell division control protein 31

Accession: EBI-761901

Name: EBI-4259

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Cell division control protein 31

Participant: Cell division control protein 31

Accession: EBI-761901

Name: EBI-4259

Confidences:

Type
Value
No records found.

2
EBI-12331
 logo
dastyLogo
NUP82
YJL061W
J1135

[+2]
Nucleoporin NUP82
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin NUP82

Participant: Nucleoporin NUP82

Accession: EBI-761902

Name: EBI-12331

P
Participant: Nucleoporin NUP82

Participant: Nucleoporin NUP82

Accession: EBI-761902

Name: EBI-12331

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin NUP82

Participant: Nucleoporin NUP82

Accession: EBI-761902

Name: EBI-12331

Stoichiometry: 0.0

F
Participant: Nucleoporin NUP82

Participant: Nucleoporin NUP82

Accession: EBI-761902

Name: EBI-12331

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin NUP82

Participant: Nucleoporin NUP82

Accession: EBI-761902

Name: EBI-12331

Confidences:

Type
Value
No records found.

3
EBI-3035
 logo
dastyLogo
ASM4
Nuclear pore protein NUP59
NUP59

[+2]
Nucleoporin ASM4
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin ASM4

Participant: Nucleoporin ASM4

Accession: EBI-761903

Name: EBI-3035

P
Participant: Nucleoporin ASM4

Participant: Nucleoporin ASM4

Accession: EBI-761903

Name: EBI-3035

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin ASM4

Participant: Nucleoporin ASM4

Accession: EBI-761903

Name: EBI-3035

Stoichiometry: 0.0

F
Participant: Nucleoporin ASM4

Participant: Nucleoporin ASM4

Accession: EBI-761903

Name: EBI-3035

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin ASM4

Participant: Nucleoporin ASM4

Accession: EBI-761903

Name: EBI-3035

Confidences:

Type
Value
No records found.

4
EBI-12265
 logo
dastyLogo
NSP1
YJL041W
J1207

[+3]
Nucleoporin NSP1
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin NSP1

Participant: Nucleoporin NSP1

Accession: EBI-761904

Name: EBI-12265

P
Participant: Nucleoporin NSP1

Participant: Nucleoporin NSP1

Accession: EBI-761904

Name: EBI-12265

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin NSP1

Participant: Nucleoporin NSP1

Accession: EBI-761904

Name: EBI-12265

Stoichiometry: 0.0

F
Participant: Nucleoporin NSP1

Participant: Nucleoporin NSP1

Accession: EBI-761904

Name: EBI-12265

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin NSP1

Participant: Nucleoporin NSP1

Accession: EBI-761904

Name: EBI-12265

Confidences:

Type
Value
No records found.

5
EBI-11713
 logo
dastyLogo
NUP120
RAT2
YKL057C

[+3]
Nucleoporin NUP120
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin NUP120

Participant: Nucleoporin NUP120

Accession: EBI-761905

Name: EBI-11713

P
Participant: Nucleoporin NUP120

Participant: Nucleoporin NUP120

Accession: EBI-761905

Name: EBI-11713

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin NUP120

Participant: Nucleoporin NUP120

Accession: EBI-761905

Name: EBI-11713

Stoichiometry: 0.0

F
Participant: Nucleoporin NUP120

Participant: Nucleoporin NUP120

Accession: EBI-761905

Name: EBI-11713

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin NUP120

Participant: Nucleoporin NUP120

Accession: EBI-761905

Name: EBI-11713

Confidences:

Type
Value
No records found.

6
EBI-12337
 logo
dastyLogo
YDL116W
NUP84
Nuclear pore protein NUP84
Nucleoporin NUP84
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin NUP84

Participant: Nucleoporin NUP84

Accession: EBI-761906

Name: EBI-12337

P
Participant: Nucleoporin NUP84

Participant: Nucleoporin NUP84

Accession: EBI-761906

Name: EBI-12337

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin NUP84

Participant: Nucleoporin NUP84

Accession: EBI-761906

Name: EBI-12337

Stoichiometry: 0.0

F
Participant: Nucleoporin NUP84

Participant: Nucleoporin NUP84

Accession: EBI-761906

Name: EBI-12337

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin NUP84

Participant: Nucleoporin NUP84

Accession: EBI-761906

Name: EBI-12337

Confidences:

Type
Value
No records found.

7
EBI-34287
 logo
dastyLogo
POM34
Nuclear pore protein POM34
Pore membrane protein POM34

[+1]
Nucleoporin POM34
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin POM34

Participant: Nucleoporin POM34

Accession: EBI-761907

Name: EBI-34287

P
Participant: Nucleoporin POM34

Participant: Nucleoporin POM34

Accession: EBI-761907

Name: EBI-34287

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin POM34

Participant: Nucleoporin POM34

Accession: EBI-761907

Name: EBI-34287

Stoichiometry: 0.0

F
Participant: Nucleoporin POM34

Participant: Nucleoporin POM34

Accession: EBI-761907

Name: EBI-34287

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin POM34

Participant: Nucleoporin POM34

Accession: EBI-761907

Name: EBI-34287

Confidences:

Type
Value
No records found.

8
EBI-12392
 logo
dastyLogo
NUP1
YOR098C
YOR3182C

[+1]
Nucleoporin NUP1
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin NUP1

Participant: Nucleoporin NUP1

Accession: EBI-761908

Name: EBI-12392

P
Participant: Nucleoporin NUP1

Participant: Nucleoporin NUP1

Accession: EBI-761908

Name: EBI-12392

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin NUP1

Participant: Nucleoporin NUP1

Accession: EBI-761908

Name: EBI-12392

Stoichiometry: 0.0

F
Participant: Nucleoporin NUP1

Participant: Nucleoporin NUP1

Accession: EBI-761908

Name: EBI-12392

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin NUP1

Participant: Nucleoporin NUP1

Accession: EBI-761908

Name: EBI-12392

Confidences:

Type
Value
No records found.

9
EBI-20731
 logo
dastyLogo
YAR002W
NUP60
FUN17

[+1]
Nucleoporin NUP60
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin NUP60

Participant: Nucleoporin NUP60

Accession: EBI-761909

Name: EBI-20731

P
Participant: Nucleoporin NUP60

Participant: Nucleoporin NUP60

Accession: EBI-761909

Name: EBI-20731

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin NUP60

Participant: Nucleoporin NUP60

Accession: EBI-761909

Name: EBI-20731

Stoichiometry: 0.0

F
Participant: Nucleoporin NUP60

Participant: Nucleoporin NUP60

Accession: EBI-761909

Name: EBI-20731

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin NUP60

Participant: Nucleoporin NUP60

Accession: EBI-761909

Name: EBI-20731

Confidences:

Type
Value
No records found.

10
EBI-25846
 logo
dastyLogo
NUP192
YJL039C
Nuclear pore protein NUP192

[+1]
Nucleoporin NUP192
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin NUP192

Participant: Nucleoporin NUP192

Accession: EBI-761910

Name: EBI-25846

P
Participant: Nucleoporin NUP192

Participant: Nucleoporin NUP192

Accession: EBI-761910

Name: EBI-25846

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin NUP192

Participant: Nucleoporin NUP192

Accession: EBI-761910

Name: EBI-25846

Stoichiometry: 0.0

F
Participant: Nucleoporin NUP192

Participant: Nucleoporin NUP192

Accession: EBI-761910

Name: EBI-25846

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin NUP192

Participant: Nucleoporin NUP192

Accession: EBI-761910

Name: EBI-25846

Confidences:

Type
Value
No records found.

11
EBI-7635
 logo
dastyLogo
D1049
GLE1
BRR3

[+4]
Nucleoporin GLE1
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin GLE1

Participant: Nucleoporin GLE1

Accession: EBI-761911

Name: EBI-7635

P
Participant: Nucleoporin GLE1

Participant: Nucleoporin GLE1

Accession: EBI-761911

Name: EBI-7635

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin GLE1

Participant: Nucleoporin GLE1

Accession: EBI-761911

Name: EBI-7635

Stoichiometry: 0.0

F
Participant: Nucleoporin GLE1

Participant: Nucleoporin GLE1

Accession: EBI-761911

Name: EBI-7635

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin GLE1

Participant: Nucleoporin GLE1

Accession: EBI-761911

Name: EBI-7635

Confidences:

Type
Value
No records found.

12
EBI-11950
 logo
dastyLogo
YML031W
NDC1
Nuclear pore protein NDC1

[+1]
Nucleoporin NDC1
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin NDC1

Participant: Nucleoporin NDC1

Accession: EBI-761912

Name: EBI-11950

P
Participant: Nucleoporin NDC1

Participant: Nucleoporin NDC1

Accession: EBI-761912

Name: EBI-11950

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin NDC1

Participant: Nucleoporin NDC1

Accession: EBI-761912

Name: EBI-11950

Stoichiometry: 0.0

F
Participant: Nucleoporin NDC1

Participant: Nucleoporin NDC1

Accession: EBI-761912

Name: EBI-11950

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin NDC1

Participant: Nucleoporin NDC1

Accession: EBI-761912

Name: EBI-11950

Confidences:

Type
Value
No records found.

13
EBI-27321
 logo
dastyLogo
Nuclear pore protein NUP53
NUP53
YMR153W

[+1]
Nucleoporin NUP53
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin NUP53

Participant: Nucleoporin NUP53

Accession: EBI-761913

Name: EBI-27321

P
Participant: Nucleoporin NUP53

Participant: Nucleoporin NUP53

Accession: EBI-761913

Name: EBI-27321

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin NUP53

Participant: Nucleoporin NUP53

Accession: EBI-761913

Name: EBI-27321

Stoichiometry: 0.0

F
Participant: Nucleoporin NUP53

Participant: Nucleoporin NUP53

Accession: EBI-761913

Name: EBI-27321

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin NUP53

Participant: Nucleoporin NUP53

Accession: EBI-761913

Name: EBI-27321

Confidences:

Type
Value
No records found.

14
EBI-22648
 logo
dastyLogo
RAE1
YER107C
GLE2

[+2]
Nucleoporin GLE2
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin GLE2

Participant: Nucleoporin GLE2

Accession: EBI-761914

Name: EBI-22648

P
Participant: Nucleoporin GLE2

Participant: Nucleoporin GLE2

Accession: EBI-761914

Name: EBI-22648

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin GLE2

Participant: Nucleoporin GLE2

Accession: EBI-761914

Name: EBI-22648

Stoichiometry: 0.0

F
Participant: Nucleoporin GLE2

Participant: Nucleoporin GLE2

Accession: EBI-761914

Name: EBI-22648

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin GLE2

Participant: Nucleoporin GLE2

Accession: EBI-761914

Name: EBI-22648

Confidences:

Type
Value
No records found.

15
EBI-12345
 logo
dastyLogo
NUP85
RAT9
YJR042W

[+2]
Nucleoporin NUP85
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin NUP85

Participant: Nucleoporin NUP85

Accession: EBI-761915

Name: EBI-12345

P
Participant: Nucleoporin NUP85

Participant: Nucleoporin NUP85

Accession: EBI-761915

Name: EBI-12345

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin NUP85

Participant: Nucleoporin NUP85

Accession: EBI-761915

Name: EBI-12345

Stoichiometry: 0.0

F
Participant: Nucleoporin NUP85

Participant: Nucleoporin NUP85

Accession: EBI-761915

Name: EBI-12345

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin NUP85

Participant: Nucleoporin NUP85

Accession: EBI-761915

Name: EBI-12345

Confidences:

Type
Value
No records found.

16
EBI-11756
 logo
dastyLogo
YBL0725
NUP170
NLE3

[+2]
Nucleoporin NUP170
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin NUP170

Participant: Nucleoporin NUP170

Accession: EBI-761916

Name: EBI-11756

P
Participant: Nucleoporin NUP170

Participant: Nucleoporin NUP170

Accession: EBI-761916

Name: EBI-11756

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin NUP170

Participant: Nucleoporin NUP170

Accession: EBI-761916

Name: EBI-11756

Stoichiometry: 0.0

F
Participant: Nucleoporin NUP170

Participant: Nucleoporin NUP170

Accession: EBI-761916

Name: EBI-11756

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin NUP170

Participant: Nucleoporin NUP170

Accession: EBI-761916

Name: EBI-11756

Confidences:

Type
Value
No records found.

17
EBI-12315
 logo
dastyLogo
NUP49
NSP49
YGL172W

[+2]
Nucleoporin NUP49/NSP49
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin NUP49/NSP49

Participant: Nucleoporin NUP49/NSP49

Accession: EBI-761917

Name: EBI-12315

P
Participant: Nucleoporin NUP49/NSP49

Participant: Nucleoporin NUP49/NSP49

Accession: EBI-761917

Name: EBI-12315

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin NUP49/NSP49

Participant: Nucleoporin NUP49/NSP49

Accession: EBI-761917

Name: EBI-12315

Stoichiometry: 0.0

F
Participant: Nucleoporin NUP49/NSP49

Participant: Nucleoporin NUP49/NSP49

Accession: EBI-761917

Name: EBI-12315

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin NUP49/NSP49

Participant: Nucleoporin NUP49/NSP49

Accession: EBI-761917

Name: EBI-12315

Confidences:

Type
Value
No records found.

18
EBI-11730
 logo
dastyLogo
YGL092W
NUP145
RAT10

[+1]
Nucleoporin NUP145
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin NUP145

Participant: Nucleoporin NUP145

Accession: EBI-761918

Name: EBI-11730

P
Participant: Nucleoporin NUP145

Participant: Nucleoporin NUP145

Accession: EBI-761918

Name: EBI-11730

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin NUP145

Participant: Nucleoporin NUP145

Accession: EBI-761918

Name: EBI-11730

Stoichiometry: 0.0

F
Participant: Nucleoporin NUP145

Participant: Nucleoporin NUP145

Accession: EBI-761918

Name: EBI-11730

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin NUP145

Participant: Nucleoporin NUP145

Accession: EBI-761918

Name: EBI-11730

Confidences:

Type
Value
No records found.

19
EBI-11722
 logo
dastyLogo
YKR402
NUP133
RAT3

[+2]
Nucleoporin NUP133
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin NUP133

Participant: Nucleoporin NUP133

Accession: EBI-761919

Name: EBI-11722

P
Participant: Nucleoporin NUP133

Participant: Nucleoporin NUP133

Accession: EBI-761919

Name: EBI-11722

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin NUP133

Participant: Nucleoporin NUP133

Accession: EBI-761919

Name: EBI-11722

Stoichiometry: 0.0

F
Participant: Nucleoporin NUP133

Participant: Nucleoporin NUP133

Accession: EBI-761919

Name: EBI-11722

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin NUP133

Participant: Nucleoporin NUP133

Accession: EBI-761919

Name: EBI-11722

Confidences:

Type
Value
No records found.

20
EBI-12739
 logo
dastyLogo
POM152
YMR129W
YM9553.05

[+3]
Nucleoporin POM152
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Organism Details

Accession: EBI-2935809

Name: yeast

Description: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Cross References:

Database
Identifier
Secondary identifier
Qualifier
baker's yeast

Expressed In Details

Accession:

Name:

-
neutral component
Experimental role: neutral component
Accession: EBI-55

Name: neutral component

Description: neutral component

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0497
-
identity


Annotations:
Topic
Text
definition
Molecule role in an experimental setting that does not have an embedded asymmetry.


unspecified role
Biological role: unspecified role
Accession: EBI-77781

Name: unspecified role

Description: unspecified role

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
psi-mi
MI:0499
-
identity


Annotations:
Topic
Text
definition
Role not specified or not applicable to the data.


protein
Interactor type: protein
Accession: EBI-619654

Name: protein

Description: protein

Cross References:
Database
Identifier
Secondary identifier
Qualifier
pubmed
14755292
-
primary-reference
so
SO:0000358
-
see-also
psi-mi
MI:0326
-
identity


Annotations:
Topic
Text
definition
A linear polymer of amino acids joined by peptide bonds in a specific sequence.


A
Participant: Nucleoporin POM152

Participant: Nucleoporin POM152

Accession: EBI-761920

Name: EBI-12739

P
Participant: Nucleoporin POM152

Participant: Nucleoporin POM152

Accession: EBI-761920

Name: EBI-12739

Parameters:

Type
Value
Unit
Base
Exponent
Uncertainty
No records found.


S
Participant: Nucleoporin POM152

Participant: Nucleoporin POM152

Accession: EBI-761920

Name: EBI-12739

Stoichiometry: 0.0

F
Participant: Nucleoporin POM152

Participant: Nucleoporin POM152

Accession: EBI-761920

Name: EBI-12739

Features:

Legend:
A
Annotation and Cross Reference  
Feature Name
Feature Type
Detection Method
Range positions
More...
No records found.

C
Participant: Nucleoporin POM152

Participant: Nucleoporin POM152

Accession: EBI-761920

Name: EBI-12739

Confidences:

Type
Value
No records found.