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Software

The Huber group are involved with various software projects.

Please visit http://www.bioconductor.org for more information and for downloads.

These projects include:

Project Description
biomaRt An API in R to query BioMart databases such as Ensembl, a software system which produces and maintains automatic annotation on metazoan genomes.
Maintainer: Steffen Durinck
cellHTS Analysis of cell-based high-throughput screens.
Maintainer: Wolfgang Huber
EBImage Image processing toolkit for R (image I/O, conversion, display, processing).
Maintainer: Oleg Sklyar
gff3Plotter Plotting data along genomic coordinates.
Maintainer: Oleg Sklyar
prada Tools for analysing and navigating data from high-throughput phenotyping experiments based on cellular assays and fluorescent detection (flow cytometry / FACS, high-content screening microscopy).
Maintainer: Florian Hahne
macat This library contains functions to investigate links between differential gene expression and the chromosomal localization of the genes. It contains the implementation of a statistical approach for identifying significantly differentially expressed chromosome regions.
Maintainer: Joern Toedling
tilingArray Analysis of high-density tiling arrays. The package offers a fast model-based segmentation algorithm and plot functions for visualisation of hybridisation data along with genomic annotation along genomic coordinates.
Maintainer: Wolfgang Huber
vsn Normalization and variance stabilizing transformation of microarray data.
Maintainer: Wolfgang Huber


cDNA Microarray Production Movies

By Günther Sawitzki, Wolfgang Huber and Holger Sültmann (2001).
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