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CHC1
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Saccharomyces cerevisiae
CHC1 is differentially expressed in 17 experiments: 6 compound treatments: ammonium, doxycycline, ... (4 more);, 16 genotypes: wild type, ADH-spt6, ... (14 more);, 3 growth conditions 1 material types 2 protocol types and 3 other conditions.
Synonyms SWA5
Orthologs cltcb (Danio rerio)   CLTCL1 (1 of 2) (Danio rerio)   CLTC (Bos taurus)   CLTC (Homo sapiens)   CLTCL1 (Gallus gallus)   ENSCING00000001739 (Ciona intestinalis)   Cltc (Rattus norvegicus)   CLTC (Gallus gallus)   cltca (Danio rerio)   CLTC (3 of 3) (Danio rerio)   Cltc (Mus musculus)   CLTCL1 (2 of 2) (Danio rerio)   Chc (Drosophila melanogaster)   cltc (Xenopus tropicalis)   CLTCL1 (Homo sapiens)   CLTCL1 (Xenopus tropicalis)   (Compare orthologs)
Gene Ontology Term clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit, membrane, intracellular protein transport, structural molecule activity, vesicle-mediated transport, coated pit, clathrin vesicle coat, cytoplasmic vesicle, binding, cytoplasmic vesicle membrane, endocytosis
UniProt Accession P22137
InterPro Term Clathrin, heavy chain, propeller repeat, Clathrin, heavy chain, propeller, N-terminal, Clathrin, heavy chain, Armadillo-type fold, Clathrin, heavy chain, linker, core motif, Clathrin, heavy chain/VPS, 7-fold repeat
Search EB-eye YGL206C
Show more properties
Experimental Factors
Compound treatment

studied in E-GEOD-2224, E-GEOD-1938, E-MTAB-643, E-GEOD-3200

3
1
Number of published studies where the gene is over/under expressed compared to the gene's overall mean expression level in the study.
Factor Value U/D Experiments
ammonium
1
E-MTAB-643
mannose 0.75 grams per liter
1
E-GEOD-1938
doxycycline
1
1
E-GEOD-3200
sodium chloride
1
E-GEOD-2224
glucose
1
1
E-MTAB-643
none
15
1
E-GEOD-3200


genotype

studied in E-GEOD-20591, E-TABM-544, E-GEOD-19569, E-GEOD-3200, E-MEXP-2123, ... (6 experiments)

Factor Value U/D Experiments
Gcr2 deletion mutant
1
E-GEOD-19569
rnt1 delta
1
E-GEOD-2683
sip2-delta
1
E-GEOD-20591
gal83-delta
1
E-GEOD-20591
sip1-delta
1
E-GEOD-20591
spt6deltaC
1
E-MEXP-2123
10 more value(s).


growth condition

studied in E-GEOD-8379, E-MEXP-724

Factor Value U/D Experiments
3 days in YPD (control)
1
E-GEOD-8379
3 days in YPD + 2% glucose for 10 minutes
1
E-GEOD-8379
glucose limitation
1
1
E-MEXP-724


material type

studied in E-MEXP-526

Factor Value U/D Experiments
polysomal RNA
1
E-MEXP-526


protocol type

studied in E-MEXP-2581

Factor Value U/D Experiments
heavy
1
E-MEXP-2581
light
1
E-MEXP-2581


Strain Background is FY23 x FY86 (Winston et al. 1995), carrying the auxotrophic markers

studied in E-GEOD-11801

Factor Value U/D Experiments
his3-delta200, leu2-delta1, trp1-delta63, ura3-52.
1
E-GEOD-11801
his3-delta200, leu2-delta1, trp1-delta63, ura3-52. The strain contains deletions in the genes SKI2, SKI8, and RRP6.
1
E-GEOD-11801
his3-delta200, leu2-delta1, trp1-delta63, ura3-52. The strain contains deletions in the genes XRN1, RRP6, LSM1, and PAT1.
1
E-GEOD-11801
his3-delta200, leu2-delta1, trp1-delta63, ura3-52. The strain contains deletions in the genes RRP6, LSM1, and PAT1.
1
E-GEOD-11801


temperature
studied in E-TABM-291

treatment
studied in E-GEOD-15254

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Gene Expression Atlas 2.0.13- 4/23/12 11:55:46 AM