Gene Expression Atlas home | about the project | faq | feedback | blog | das | api | help
MSH3
REST API REST API
Saccharomyces cerevisiae
MSH3 is differentially expressed in 19 experiments: 8 compound treatments: none, DMSO 1 volume percent, ... (6 more);, 14 genotypes: "GAL-ABF1 overexpression transgene, heterozygous", IFH1-13myc-TRP1, ... (12 more);, 4 growth conditions 2 protocol types 3 strain background is fy23 x fy86 (winston et al. 1995), carrying the auxotrophic markers and 1 other conditions.
Orthologs F1MLH1_BOVIN (Bos taurus)   MSH3 (Homo sapiens)   msh3 (Danio rerio)   E1C1F8_CHICK (Gallus gallus)   Msh3 (Mus musculus)   ENSGALG00000022183 (Gallus gallus)   MSH3 (2 of 2) (Danio rerio)   Msh3 (Rattus norvegicus)   msh3 (Xenopus tropicalis)   (Compare orthologs)
Gene Ontology Term reciprocal meiotic recombination, DNA binding, DNA repair, cytoplasm, damaged DNA binding, nuclear chromosome, MutSbeta complex, mismatched DNA binding, meiotic mismatch repair, ATP binding, Y-form DNA binding, DNA-dependent ATPase activity, nucleus, mismatch repair, DNA recombination, maintenance of DNA repeat elements, nucleotide binding, response to DNA damage stimulus, mitotic recombination, removal of nonhomologous ends, DNA insertion or deletion binding, loop DNA binding, double-strand/single-strand DNA junction binding
UniProt Accession P25336
InterPro Term DNA mismatch repair protein MutS, connector, DNA mismatch repair protein MutS, core, DNA mismatch repair protein MutS, C-terminal, DNA mismatch repair protein MutS-like, N-terminal, DNA mismatch repair protein MutS, clamp, DNA mismatch repair protein MutS, N-terminal
Search EB-eye YCR092C
Show more properties
Experimental Factors
Compound treatment

studied in E-GEOD-17257, E-GEOD-2224, E-GEOD-1938, E-GEOD-2343, E-MEXP-998, ... (6 experiments)

3
1
Number of published studies where the gene is over/under expressed compared to the gene's overall mean expression level in the study.
Factor Value U/D Experiments
clioquinol 80 micromolar
1
E-GEOD-17257
methyl methanesulfonate
1
E-GEOD-2343
ethanol
1
E-GEOD-2224
doxycycline
1
1
E-GEOD-3200
DMSO 1 volume percent
1
E-GEOD-17257
mannose 0.75 grams per liter
1
E-GEOD-1938
2 more value(s).


genotype

studied in E-TABM-291, E-MEXP-585, E-MEXP-1407, E-GEOD-20591, E-MEXP-1551, ... (9 experiments)

Factor Value U/D Experiments
spt6deltaC
1
E-MEXP-2123
sip2-delta
1
E-GEOD-20591
MATa his3??1 leu2??0 met15??0 ura3??0
1
E-GEOD-31774
UASGAL1-IFH1-13myc-TRP1
1
E-GEOD-1934
sip1-delta
1
E-GEOD-20591
tetO2-PAF1-6HA
1
E-GEOD-3200
8 more value(s).


growth condition

studied in E-TABM-291, E-GEOD-8379

Factor Value U/D Experiments
3 days in YPD + 2% glucose for 10 minutes
1
E-GEOD-8379
YPD media
1
E-TABM-291
3 days in YPD (control)
1
E-GEOD-8379
YPA media
1
E-TABM-291


protocol type

studied in E-MEXP-2581

Factor Value U/D Experiments
heavy
1
E-MEXP-2581
light
1
E-MEXP-2581


Strain Background is FY23 x FY86 (Winston et al. 1995), carrying the auxotrophic markers

studied in E-GEOD-11801

Factor Value U/D Experiments
his3-delta200, leu2-delta1, trp1-delta63, ura3-52. The strain contains deletions in the genes XRN1, RRP6, LSM1, and PAT1.
1
E-GEOD-11801
his3-delta200, leu2-delta1, trp1-delta63, ura3-52. The strain contains deletions in the genes SKI2, SKI8, and RRP6.
1
E-GEOD-11801
his3-delta200, leu2-delta1, trp1-delta63, ura3-52.
1
E-GEOD-11801


treatment

studied in E-GEOD-15254, E-GEOD-33136

Factor Value U/D Experiments
none
1
E-GEOD-33136
3-AT
1
E-GEOD-15254
39°C for 20 min
1
E-GEOD-33136
Rapamycin
1
E-GEOD-15254


Processing time: 0.79 secs.
 
Gene Expression Atlas 2.0.13- 4/23/12 11:55:46 AM