Gene Expression Atlas home | about the project | faq | feedback | blog | das | api | help
PTC3
REST API REST API
Saccharomyces cerevisiae
PTC3 is differentially expressed in 25 experiments: 8 compound treatments: methyl methanesulfonate, none, ... (6 more);, 2 affinity selections: Biotin-16-UTP selection with Dynabeads MyOne Streptavidin C1, none;, 1 cell stages 15 genotypes 6 growth conditions and 6 other conditions.
Orthologs PPM1A (Homo sapiens)   Ppm1n (Mus musculus)   PPM1N (1 of 2) (Danio rerio)   F6VFP7_CIOIN (Ciona intestinalis)   PPM1B (Homo sapiens)   PPM1B (Gallus gallus)   Ppm1g (Rattus norvegicus)   RGD1562091 (Rattus norvegicus)   ppm1d (Danio rerio)   PPM1N (Homo sapiens)   F7B678_CIOIN (Ciona intestinalis)   PPM1D (1 of 2) (Danio rerio)   E1BVM8_CHICK (Gallus gallus)   Ppm1b (Rattus norvegicus)   E1BVR7_CHICK (Gallus gallus)   ppm1aa (Danio rerio)   PPM1D (Homo sapiens)   Ppm1d (Mus musculus)   Ppm1b (Mus musculus)   PPM1A_BOVIN (Bos taurus)   PPM1D (Gallus gallus)   PPM1N (2 of 2) (Danio rerio)   Ppm1d (Rattus norvegicus)   ppm1ab (Danio rerio)   PPM1B_BOVIN (Bos taurus)   Ppm1a (Rattus norvegicus)   ppm1g (Danio rerio)   ENSBTAG00000031088 (Bos taurus)   Ppm1a (Mus musculus)   ppm1bb (Danio rerio)   ENSCING00000007208 (Ciona intestinalis)   E1BD03_BOVIN (Bos taurus)   F7AUM2_CIOIN (Ciona intestinalis)   ppm1ba (Danio rerio)   PPM1G (Homo sapiens)   Ppm1g (Mus musculus)   PPM1G_BOVIN (Bos taurus)   Pp2C1 (Drosophila melanogaster)   CG10417 (Drosophila melanogaster)   CG6036 (Drosophila melanogaster)   alph (Drosophila melanogaster)   CG17746 (Drosophila melanogaster)   Ppm1 (Drosophila melanogaster)   ppm1a (Xenopus tropicalis)   ppm1d (Xenopus tropicalis)   ppm1g (Xenopus tropicalis)   ENSXETG00000002746 (Xenopus laevis)   MGC148938 (Bos taurus)   (Compare orthologs)
Gene Ontology Term protein serine/threonine phosphatase activity, protein serine/threonine phosphatase complex, catalytic activity, protein dephosphorylation
UniProt Accession P34221
InterPro Term Protein phosphatase 2C-like, Protein phosphatase 2C, manganese/magnesium aspartate binding site
Search EB-eye YBL056W
Show more properties
Experimental Factors
Compound treatment

studied in E-GEOD-2224, E-GEOD-1938, E-GEOD-2343, E-MTAB-78, E-GEOD-3200 ... (5 experiments)

3
1
Number of published studies where the gene is over/under expressed compared to the gene's overall mean expression level in the study.
Factor Value U/D Experiments
methyl methanesulfonate
1
2
E-GEOD-2224, E-GEOD-2343
nitrogen
1
E-MTAB-78
doxycycline
1
1
E-GEOD-3200
mannose 0.75 grams per liter
1
E-GEOD-1938
mannose 5 grams per liter
1
E-GEOD-1938
sodium chloride
1
E-GEOD-2224
2 more value(s).


affinity selection

studied in E-GEOD-33136

Factor Value U/D Experiments
Biotin-16-UTP selection with Dynabeads MyOne Streptavidin C1
1
E-GEOD-33136
none
1
E-GEOD-33136


cell stage

studied in E-GEOD-33677

Factor Value U/D Experiments
1hr HU arrest after release from 4hr α-factor arrest
1
E-GEOD-33677


genotype

studied in E-TABM-291, E-GEOD-20591, E-MEXP-1551, E-GEOD-4135, E-GEOD-18310, ... (8 experiments)

Factor Value U/D Experiments
wild type
1
2
E-GEOD-20591, E-GEOD-2683, E-GEOD-4135
MATalpha; mfa::MFA1pr-HIS3 can1 ura3 leu2 his3 lys2
1
E-MEXP-1551
delta eos1
1
E-GEOD-18310
rnt1 delta
1
E-GEOD-2683
sip1-delta sip2-delta
1
E-GEOD-20591
GAL-ABF1 overexpression transgene, heterozygous
1
E-TABM-291
9 more value(s).


growth condition

studied in E-MEXP-1139, E-GEOD-21988, E-GEOD-2076

Factor Value U/D Experiments
nitrogen limited
1
E-GEOD-2076
glucose-limiting medium
1
E-MEXP-1139
nitrogen limitation with glucose as carbon source
1
E-GEOD-21988
carbon limited
1
E-GEOD-2076
ethanol limitation
1
E-GEOD-21988
ethanol-limiting medium
1
E-MEXP-1139


phenotype

studied in E-GEOD-13889

Factor Value U/D Experiments
expressing plasmid borne histone H3 protein encoding the substitutions K42A
1
E-GEOD-13889
expressing plasmid borne histone H3 protein encoding the substitutions K42Q
1
E-GEOD-13889


protocol type
studied in E-MEXP-2581

Strain Background is FY23 x FY86 (Winston et al. 1995), carrying the auxotrophic markers
studied in E-GEOD-11801

strain or line
studied in E-GEOD-1314, E-GEOD-4135

temperature
studied in E-TABM-291, E-GEOD-23602, E-MEXP-1551

treatment
studied in E-GEOD-15254

Processing time: 0.723 secs.
 
Gene Expression Atlas 2.0.13- 4/23/12 11:55:46 AM