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CDKN2A
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Homo sapiens
CDKN2A is differentially expressed in 300 experiments: 141 organism parts: prostate, lung, ... (139 more);, 240 disease states: normal, acute lymphoblastic leukemia, ... (238 more);, 83 cell types 576 cell lines 32 compound treatments and 77 other conditions.
Synonyms p16, MTS1, p14, p19, INK4, CDK4I, CDKN2, INK4a, MLM, ARF, p19Arf, p16INK4a, CMM2
Orthologs CDKN2A (Bos taurus)   CDKN2B (Danio rerio)   Cdkn2a (Rattus norvegicus)   Cdkn2a (Mus musculus)   cdkn2b (Xenopus laevis)   (Compare orthologs)
Gene Ontology Term cytosol, rRNA processing, negative regulation of cell growth, DNA binding, protein stabilization, negative regulation of transcription, DNA-dependent, protein binding, regulation of transcription, DNA-dependent, cytoplasm, somatic stem cell division, negative regulation of cell proliferation, negative regulation of protein kinase activity, protein complex, transcription, DNA-dependent, mitotic cell cycle, regulation of cyclin-dependent protein kinase activity, regulation of G2/M transition of mitotic cell cycle, cell cycle arrest, regulation of protein stability, activation of caspase activity, G1 phase of mitotic cell cycle, transcription factor binding, regulation of nucleocytoplasmic transport, rRNA transcription, induction of apoptosis, cell cycle, Ras protein signal transduction, positive regulation of transcription from RNA polymerase II promoter, protein kinase binding, G1/S transition of mitotic cell cycle, nucleus, protein polyubiquitination, epidermis development, regulation of gene expression, somatic stem cell maintenance, aging, kinase activity, nuclear body, DNA fragmentation involved in apoptotic nuclear change, nucleoplasm, cell cycle checkpoint, cyclin-dependent protein kinase inhibitor activity, negative regulation of cell cycle, positive regulation of transcription, DNA-dependent, negative regulation of cyclin-dependent protein kinase activity, nucleolus, negative regulation of ubiquitin-protein ligase activity, granular component, cell aging, negative regulation of NF-kappaB transcription factor activity, positive regulation of smooth muscle cell apoptosis, apoptotic mitochondrial changes, MDM2 binding, protein destabilization, positive regulation of apoptosis involved in mammary gland involution, regulation of protein export from nucleus, NF-kappaB binding, negative regulation of phosphorylation, positive regulation of protein sumoylation, p53 binding, positive regulation of cell cycle arrest, negative regulation of B cell proliferation, positive regulation of DNA damage response, signal transduction by p53 class mediator, negative regulation of cell-matrix adhesion, negative regulation of mammary gland epithelial cell proliferation, protein K63-linked ubiquitination, sequence-specific DNA binding transcription factor activity, ubiquitin-protein ligase inhibitor activity, replicative senescence, cellular senescence, positive regulation of macrophage apoptosis, positive regulation of sequence-specific DNA binding transcription factor activity, negative regulation of immature T cell proliferation in thymus, positive regulation of cellular senescence, senescence-associated heterochromatin focus formation, senescence-associated heterochromatin focus
InterPro Term Ankyrin_rpt-contain_dom, Cyclin_kinase-Inhib_2A
UniProt Accession A7LNE7, Q9UPB7, Q5ZEY9, Q208B5, Q8N726, P42771, A5X2G7
Gene-Disease Assocation MELANOMA-PANCREATIC CANCER SYNDROME, MELANOMA-ASTROCYTOMA SYNDROME, MELANOMA, CUTANEOUS MALIGNANT, SUSCEPTIBILITY TO, 2; CMM2, LI-FRAUMENI SYNDROME 1; LFS1
Search EB-eye ENSG00000147889
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Experimental Factors
Organism part

studied in E-GEOD-803, E-GEOD-15765, E-AFMX-5, E-MEXP-1251, E-MTAB-24, ... (24 experiments)

3
1
Number of published studies where the gene is over/under expressed compared to the gene's overall mean expression level in the study.

anatomogram

Cell line

studied in E-GEOD-3860, E-GEOD-17482, E-GEOD-5258, E-GEOD-4525, E-MEXP-1006, ... (47 experiments)

Factor Value U/D Experiments
MCF-7
3
E-GEOD-19639, E-GEOD-3529, E-GEOD-20081
SW480
1
3
E-GEOD-18005, E-MEXP-1014, E-GEOD-2509, E-MTAB-37
A549
2
E-GEOD-3202, E-GEOD-6013
AGS
2
E-MTAB-37, E-GEOD-15460
BT-474
2
E-GEOD-3529, E-GEOD-5823
DU145
2
E-GEOD-17482, E-GEOD-20089
570 more value(s).


Cell type

studied in E-GEOD-20193, E-GEOD-22373, E-GEOD-21668, E-GEOD-3920, E-MEXP-66, ... (42 experiments)

Factor Value U/D Experiments
macrophage
2
E-GEOD-360, E-GEOD-22373
embryonic stem cell
2
E-MEXP-930, E-GEOD-2248
human embryonic stem cell
1
2
E-GEOD-20033, E-GEOD-18265, E-GEOD-18147
mononuclear
1
E-GEOD-13987
hMOF knock-down
1
E-GEOD-20193
naive B cell
1
E-TABM-702
77 more value(s).


Disease state

studied in E-GEOD-1615, E-GEOD-3307, E-GEOD-15960, E-GEOD-2466, E-TABM-15, ... (64 experiments)

Factor Value U/D Experiments
acute lymphoblastic leukemia
3
E-MTAB-37, E-MTAB-62, E-GEOD-96
cervical carcinoma
3
E-MTAB-62, E-MTAB-37, E-MEXP-1331
control
3
E-GEOD-21912, E-GEOD-16363, E-GEOD-20602
chronic lymphocytic leukemia
2
E-GEOD-6691, E-GEOD-2466
Raji Burkitt's lymphoma
2
E-AFMX-5, E-TABM-145
colon carcinoma
2
E-MTAB-62, E-GEOD-3726
234 more value(s).


Compound treatment

studied in E-GEOD-571, E-GEOD-5741, E-GEOD-15205, E-GEOD-3720, E-GEOD-5824, ... (21 experiments)

Factor Value U/D Experiments
phorbol 12-myristate 13-acetate + ionomycin
1
E-GEOD-3720
5-fluorouridine
1
1
E-GEOD-995
vanadium pentoxide
1
E-GEOD-5339
glucose
1
E-MEXP-941
NaOH
1
1
E-MEXP-2590
cigarette smoke
1
E-TABM-127
26 more value(s).


Age at diagnosis

studied in E-GEOD-3494, E-GEOD-4922

Factor Value U/D Experiments
32 years
1
1
E-GEOD-4922
28
2
1
E-GEOD-3494
32
2
1
E-GEOD-3494


Agent
studied in E-GEOD-19519

Biopsy tissue
studied in E-GEOD-5851

Biosource provider
studied in E-MTAB-37

BioSourceProvider
studied in E-GEOD-19466, E-GEOD-19519, E-GEOD-19480

Blood/non-blood meta-groups
studied in E-MTAB-62

Bmngrd
studied in E-GEOD-20194, E-GEOD-16716

Cancer site
studied in E-GEOD-4271

Cell treatment
studied in E-MEXP-1192

Chromosomal aberration
studied in E-TABM-125

Clinical history
studied in E-GEOD-22097, E-TABM-234, E-GEOD-19743, E-GEOD-7967, E-TABM-125, ... (9 experiments)

Clinical info
studied in E-GEOD-19743, E-GEOD-22513, E-MEXP-1251, E-GEOD-21374, E-GEOD-1563, ... (13 experiments)

Clinical treatment
studied in E-GEOD-1743, E-GEOD-6532

coriell cell line repository identifier
studied in E-GEOD-19519

Developmental stage
studied in E-GEOD-19743, E-GEOD-5999, E-GEOD-20033, E-GEOD-4667, E-MTAB-62 ... (5 experiments)

dfs time (months)
studied in E-GEOD-21653

Disease staging
studied in E-GEOD-89, E-GEOD-1323, E-GEOD-19743, E-GEOD-3325, E-GEOD-2509, ... (7 experiments)

Environmental stress
studied in E-GEOD-1643, E-GEOD-3720

Epiregulin elisa conc ng ml
studied in E-GEOD-5851

Er
studied in E-GEOD-20194, E-GEOD-16716

Estrogen receptor status
studied in E-GEOD-3494, E-GEOD-6532, E-GEOD-20194, E-GEOD-16716

Ethnic group
studied in E-GEOD-20194, E-GEOD-16716

Ethnicity
studied in E-GEOD-16363

family id
studied in E-GEOD-19519

Genetic modification
studied in E-GEOD-8023, E-GEOD-7011, E-MEXP-1482, E-GEOD-7578, E-GEOD-20847, ... (8 experiments)

Genotype
studied in E-TABM-763, E-GEOD-22056, E-GEOD-3494, E-GEOD-2466, E-GEOD-17476, ... (8 experiments)

369 groups
studied in E-MTAB-62

4 groups from blood to incompletely diff
studied in E-MTAB-62

96 groups
studied in E-MTAB-62

Growth condition
studied in E-TABM-263, E-GEOD-5681, E-GEOD-7011, E-GEOD-12773, E-TABM-127, ... (11 experiments)

Her2 fish
studied in E-GEOD-20194, E-GEOD-16716

Her2 ihc
studied in E-GEOD-20194, E-GEOD-16716

Histology
studied in E-TABM-234, E-GEOD-21653, E-TABM-276, E-GEOD-20194, E-GEOD-16716 ... (5 experiments)

Individual
studied in E-TABM-325, E-MTAB-197, E-GEOD-974, E-MEXP-1956, E-MEXP-2069, ... (40 experiments)

Infection
studied in E-GEOD-2405, E-GEOD-12108, E-GEOD-12254, E-MEXP-561, E-GEOD-17400 ... (5 experiments)

Injury
studied in E-GEOD-19743

Ki67 ihc
studied in E-GEOD-21653

Material type
studied in E-MEXP-455, E-GEOD-9171

15 meta groups
studied in E-MTAB-62

4 meta groups
studied in E-MTAB-62

6 meta groups
studied in E-MTAB-62

Metastasis
studied in E-GEOD-18105

Molecular subtype
studied in E-GEOD-21653

Observation
studied in E-TABM-276

organ
studied in E-GEOD-24283

Organism
studied in E-GEOD-1801, E-TABM-84

Organism status
studied in E-GEOD-19188

Original diagnosis
studied in E-GEOD-21521

P53 ihc
studied in E-GEOD-21653

Pcr vs rd
studied in E-GEOD-20194, E-GEOD-16716

Performer
studied in E-GEOD-2004

Phase
studied in E-GEOD-4888

Phenotype
studied in E-GEOD-26495, E-GEOD-19703, E-GEOD-1309, E-GEOD-21750, E-GEOD-1657, ... (7 experiments)

Population
studied in E-GEOD-4922, E-GEOD-4342

Progesterone receptor status
studied in E-GEOD-3494, E-GEOD-6532, E-GEOD-20194, E-GEOD-16716

Progression free survival of days
studied in E-GEOD-5851

Protocol type
studied in E-GEOD-22097, E-GEOD-19445, E-GEOD-19246, E-GEOD-1343

Replicate
studied in E-GEOD-10797, E-GEOD-10896

RNAi
studied in E-MEXP-2115, E-GEOD-12438, E-MEXP-1509, E-GEOD-1676, E-MEXP-101, ... (9 experiments)

Sample preparation
studied in E-GEOD-16728, E-GEOD-12710

sampleID
studied in E-GEOD-24283

Sampling time point
studied in E-GEOD-19743, E-GEOD-21374, E-GEOD-17400

sbr grade
studied in E-GEOD-21653

Sex
studied in E-GEOD-2466, E-GEOD-8052, E-GEOD-7307

Sirna
studied in E-GEOD-21575

Stimulation
studied in E-GEOD-20114

stimulus
studied in E-GEOD-22103

Strain or line
studied in E-TABM-125

Subtype
studied in E-GEOD-24283

Survival time
studied in E-GEOD-4922, E-GEOD-19188

Tbefore
studied in E-GEOD-20194, E-GEOD-16716

Test result
studied in E-TABM-43, E-TABM-276

Transfection
studied in E-GEOD-14680

Treatment
studied in E-GEOD-22152, E-GEOD-16837, E-MEXP-973, E-GEOD-19246, E-GEOD-19815, ... (6 experiments)

Treatment code
studied in E-GEOD-20194, E-GEOD-16716

Treatments comments
studied in E-GEOD-20194, E-GEOD-16716

Tumor grading
studied in E-GEOD-4271, E-GEOD-3494, E-GEOD-1561, E-GEOD-4922

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Gene Expression Atlas 2.0.11.1- 12/23/11 3:09:34 PM