Supporting information for the paper "An algorithm for progressive multiple alignment of sequences with insertions".

D-loop

• unaligned sequences
• alignment guide tree
• alignment HMM: JC, HKY

• ClustalW (fasta) (pdf)
• JC- (fasta) (pdf)
• JC+ (fasta) (pdf)
• JC+F (fasta) (pdf)
• HKY- (fasta) (pdf)
• HKY+ (fasta) (pdf)
• HKY+F (fasta) (pdf)