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PANDIT Protein and Associated NucleotideDomains with Inferred Trees

FAM  PF07908
PID  D-aminoacyl_C
DES  D-aminoacylase, C-terminal region
ANO  23
ALN  50
AID  0.333237
APH  (((Q9V2D3_PYRAB/478-525:0.52765,((Q7NL19_GLOVI/442-489:0.32490,(((NDAD_ALCXX/434-481:0.28391,NDDD_ALCXX/441-488:0.59683):0.20189,(((Q7MD91_VIBVY/429-476:0.47225,Q6LSP3_PHOPR/430-477:0.21550):0.30990,(Q87V24_PSESM/430-477:0.52158,Q8XQN5_RALSO/435-482:0.14935):0.04511):0.13227,(Q82GU7_STRAW/519-567:0.38895,(Q73SY3_MYCPA/520-568:0.27652,((Q89VP1_BRAJA/519-567:0.27645,(Q73RW4_MYCPA/539-587:0.22874,Q7W724_BORPA/522-570:0.34814):0.11566):0.04014,Q9A2U6_CAUCR/523-571:0.22987):0.09593):0.57279):0.69418):0.10373):0.10345,(Q7VYV0_BORPE/433-479:0.16105,NDED_ALCXX/431-477:0.26941):0.42756):0.15464):0.16653,(Q7UWE0_RHOBA/511-558:0.34972,(Q6WSB9_9PSEU/367-415:0.58491,(Q8D645_VIBVU/503-551:0.51871,Q89DY3_BRAJA/487-535:0.48607):0.20318):0.13228):0.16775):0.14900):0.09566,Q7MD66_VIBVY/478-526:0.54823):0.60379,Q82I76_STRAW/481-528:0.03318,Q93JK8_STRCO/487-534:0.27103);
ATP  (((Q9V2D3_PYRAB/478-525,((Q7NL19_GLOVI/442-489,(((NDAD_ALCXX/434-481,NDDD_ALCXX/441-488),(((Q7MD91_VIBVY/429-476,Q6LSP3_PHOPR/430-477),(Q87V24_PSESM/430-477,Q8XQN5_RALSO/435-482)),(Q82GU7_STRAW/519-567,(Q73SY3_MYCPA/520-568,((Q89VP1_BRAJA/519-567,(Q73RW4_MYCPA/539-587,Q7W724_BORPA/522-570)),Q9A2U6_CAUCR/523-571))))),(Q7VYV0_BORPE/433-479,NDED_ALCXX/431-477))),(Q7UWE0_RHOBA/511-558,(Q6WSB9_9PSEU/367-415,(Q8D645_VIBVU/503-551,Q89DY3_BRAJA/487-535))))),Q7MD66_VIBVY/478-526),Q82I76_STRAW/481-528,Q93JK8_STRCO/487-534);
ATL  12.7881
DNO  23
DLN  150
DID  0.450795
DPH  (((((((((((Q7UWE0_RHOBA/511-558:0.36271,((Q8D645_VIBVU/503-551:0.34536,Q9V2D3_PYRAB/478-525:0.43508):0.10812,Q7MD66_VIBVY/478-526:0.29028):0.19881):0.05399,((Q6WSB9_9PSEU/367-415:0.26799,Q89DY3_BRAJA/487-535:0.42129):0.09989,(Q82I76_STRAW/481-528:0.07949,Q93JK8_STRCO/487-534:0.28072):0.30637):0.12459):0.07646,Q7NL19_GLOVI/442-489:0.32585):0.05740,((Q7MD91_VIBVY/429-476:0.34979,Q6LSP3_PHOPR/430-477:0.26968):0.29327,Q87V24_PSESM/430-477:0.25984):0.19528):0.06326,(NDAD_ALCXX/434-481:0.16256,NDDD_ALCXX/441-488:0.46581):0.18323):0.09117,(Q8XQN5_RALSO/435-482:0.26526,(Q7VYV0_BORPE/433-479:0.13549,NDED_ALCXX/431-477:0.17119):0.20580):0.03494):0.27266,Q82GU7_STRAW/519-567:0.33522):0.29750,Q73SY3_MYCPA/520-568:0.20813):0.07463,Q89VP1_BRAJA/519-567:0.23980):0.04105,Q9A2U6_CAUCR/523-571:0.23892):0.06651,Q7W724_BORPA/522-570:0.23488,Q73RW4_MYCPA/539-587:0.21284);
DTP  (((((((((((Q7UWE0_RHOBA/511-558,((Q8D645_VIBVU/503-551,Q9V2D3_PYRAB/478-525),Q7MD66_VIBVY/478-526)),((Q6WSB9_9PSEU/367-415,Q89DY3_BRAJA/487-535),(Q82I76_STRAW/481-528,Q93JK8_STRCO/487-534))),Q7NL19_GLOVI/442-489),((Q7MD91_VIBVY/429-476,Q6LSP3_PHOPR/430-477),Q87V24_PSESM/430-477)),(NDAD_ALCXX/434-481,NDDD_ALCXX/441-488)),(Q8XQN5_RALSO/435-482,(Q7VYV0_BORPE/433-479,NDED_ALCXX/431-477))),Q82GU7_STRAW/519-567),Q73SY3_MYCPA/520-568),Q89VP1_BRAJA/519-567),Q9A2U6_CAUCR/523-571),Q7W724_BORPA/522-570,Q73RW4_MYCPA/539-587);
DTL  9.02184
RID  0.333237
RPH  (((Q9V2D3_PYRAB/478-525:0.52765,((Q7NL19_GLOVI/442-489:0.32490,(((NDAD_ALCXX/434-481:0.28391,NDDD_ALCXX/441-488:0.59683):0.20189,(((Q7MD91_VIBVY/429-476:0.47225,Q6LSP3_PHOPR/430-477:0.21550):0.30990,(Q87V24_PSESM/430-477:0.52158,Q8XQN5_RALSO/435-482:0.14935):0.04511):0.13227,(Q82GU7_STRAW/519-567:0.38895,(Q73SY3_MYCPA/520-568:0.27652,((Q89VP1_BRAJA/519-567:0.27645,(Q73RW4_MYCPA/539-587:0.22874,Q7W724_BORPA/522-570:0.34814):0.11566):0.04014,Q9A2U6_CAUCR/523-571:0.22987):0.09593):0.57279):0.69418):0.10373):0.10345,(Q7VYV0_BORPE/433-479:0.16105,NDED_ALCXX/431-477:0.26941):0.42756):0.15464):0.16653,(Q7UWE0_RHOBA/511-558:0.34972,(Q6WSB9_9PSEU/367-415:0.58491,(Q8D645_VIBVU/503-551:0.51871,Q89DY3_BRAJA/487-535:0.48607):0.20318):0.13228):0.16775):0.14900):0.09566,Q7MD66_VIBVY/478-526:0.54823):0.60379,Q82I76_STRAW/481-528:0.03318,Q93JK8_STRCO/487-534:0.27103);
RTP  (((Q9V2D3_PYRAB/478-525,((Q7NL19_GLOVI/442-489,(((NDAD_ALCXX/434-481,NDDD_ALCXX/441-488),(((Q7MD91_VIBVY/429-476,Q6LSP3_PHOPR/430-477),(Q87V24_PSESM/430-477,Q8XQN5_RALSO/435-482)),(Q82GU7_STRAW/519-567,(Q73SY3_MYCPA/520-568,((Q89VP1_BRAJA/519-567,(Q73RW4_MYCPA/539-587,Q7W724_BORPA/522-570)),Q9A2U6_CAUCR/523-571))))),(Q7VYV0_BORPE/433-479,NDED_ALCXX/431-477))),(Q7UWE0_RHOBA/511-558,(Q6WSB9_9PSEU/367-415,(Q8D645_VIBVU/503-551,Q89DY3_BRAJA/487-535))))),Q7MD66_VIBVY/478-526),Q82I76_STRAW/481-528,Q93JK8_STRCO/487-534);
RTL  12.7881
LNK  NDAD_ALCXX/434-481:P72349:S80683
LNK  NDDD_ALCXX/441-488:P94212:D45919
LNK  NDED_ALCXX/431-477:P94211:D50061
LNK  Q6LSP3_PHOPR/430-477:Q6LSP3:CR378667
LNK  Q6WSB9_9PSEU/367-415:Q6WSB9:AY271627
LNK  Q73RW4_MYCPA/539-587:Q73RW4:AE017242
LNK  Q73SY3_MYCPA/520-568:Q73SY3:AE017241
LNK  Q7MD66_VIBVY/478-526:Q7MD66:BA000038
LNK  Q7MD91_VIBVY/429-476:Q7MD91:BA000038
LNK  Q7NL19_GLOVI/442-489:Q7NL19:BA000045
LNK  Q7UWE0_RHOBA/511-558:Q7UWE0:BX294136
LNK  Q7VYV0_BORPE/433-479:Q7VYV0:BX640414
LNK  Q7W724_BORPA/522-570:Q7W724:BX640431
LNK  Q82GU7_STRAW/519-567:Q82GU7:BA000030
LNK  Q82I76_STRAW/481-528:Q82I76:BA000030
LNK  Q87V24_PSESM/430-477:Q87V24:AE016874
LNK  Q89DY3_BRAJA/487-535:Q89DY3:BA000040
LNK  Q89VP1_BRAJA/519-567:Q89VP1:BA000040
LNK  Q8D645_VIBVU/503-551:Q8D645:AE016810
LNK  Q8XQN5_RALSO/435-482:Q8XQN5:AL646083
LNK  Q93JK8_STRCO/487-534:Q93JK8:AL939122
LNK  Q9A2U6_CAUCR/523-571:Q9A2U6:AE006004
LNK  Q9V2D3_PYRAB/478-525:Q9V2D3:AJ248283
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  Q9V2D3_PYRAB/478-525
ASQ  PHRVKDR-ATYTNPRLPPDGIKYVIVNGVLSVENGEL-TGDAGGVVIRRT
DSQ  CCACATAGAGTTAAGGATAGG---GCAACTTACACTAATCCAAGGCTTCCACCGGATGGTATCAAATATGTAATAGTTAATGGTGTTTTGAGCGTTGAAAATGGTGAATTA---ACCGGAGATGCTGGTGGAGTTGTAATAAGGAGGACT
TRN  10010101110011010
NAM  Q7UWE0_RHOBA/511-558
ASQ  FNELADR-ADFENPHAESVGMKHVVVNGIPVLEDGKF-TGKRPGKVLRGP
DSQ  TTCAACGAACTCGCCGATCGA---GCCGACTTCGAAAACCCGCACGCTGAGTCGGTTGGAATGAAACATGTGGTCGTCAACGGAATCCCCGTGCTCGAGGATGGCAAATTC---ACAGGGAAACGTCCCGGCAAAGTCCTCCGCGGCCCC
TRN  11011101111011011
NAM  Q7NL19_GLOVI/442-489
ASQ  PARVADR-ATIEAPAAPPVGIEAVMVNGEWVVDGGQV-TGKRPGRVLRRP
DSQ  CCGGCGCGCGTCGCCGATCGG---GCCACCATCGAGGCACCCGCAGCCCCCCCGGTAGGCATCGAAGCGGTGATGGTCAATGGCGAATGGGTCGTCGATGGAGGCCAAGTC---ACGGGCAAGCGGCCGGGGAGGGTGCTGCGGCGGCCG
TRN  10010101100011011
NAM  NDDD_ALCXX/441-488
ASQ  PANVTDT-ATFSAPIQVSQGIHAVWVNGRQVWDGERT-GAERPGQVLAPG
DSQ  CCCGCCAACGTCACAGACACG---GCCACTTTTTCAGCTCCCATTCAGGTCAGCCAGGGCATCCACGCCGTGTGGGTCAATGGCAGGCAGGTCTGGGATGGGGAACGGACC---GGCGCCGAACGCCCGGGCCAGGTACTGGCACCCGGT
TRN  10010101100011001
NAM  NDAD_ALCXX/434-481
ASQ  PATVADT-ATFEHPTERAAGIHSVYVNGAPVWQEQAF-TGQHAGRVLART
DSQ  CCGGCCACGGTGGCCGATACC---GCCACCTTCGAACACCCTACCGAGCGCGCCGCCGGCATCCATTCCGTGTACGTCAACGGCGCGCCGGTCTGGCAAGAGCAGGCGTTC---ACCGGCCAGCATGCCGGCCGCGTGCTCGCACGCACG
TRN  11011111111111111
NAM  NDED_ALCXX/431-477
ASQ  ADTVCDR-ATWDAPTLASAGIEHVLVNGCAVFPQAPP--SHRPGRILRRD
DSQ  GCCGACACGGTGTGCGACCGC---GCCACCTGGGACGCGCCGACGCTGGCCTCGGCCGGCATCGAGCACGTGCTGGTCAACGGCTGCGCGGTGTTCCCGCAAGCCCCCCCG------TCGCATCGCCCCGGCAGGATCCTGCGCCGTGAC
TRN  10010101100011011
NAM  Q7VYV0_BORPE/433-479
ASQ  PDTVADR-ATWDEPTLASVGIAGVLVNGAEVFPQPPA-DG-RPGQVLRAG
DSQ  CCCGACACGGTGGCCGACCGC---GCCACCTGGGACGAGCCGACGCTGGCGTCGGTCGGCATCGCCGGCGTGCTGGTCAATGGCGCCGAAGTCTTCCCGCAGCCGCCTGCC---GATGGC---CGCCCCGGCCAGGTGCTGCGCGCCGGC
TRN  11011111101111111
NAM  Q8XQN5_RALSO/435-482
ASQ  PDTVRDL-ATFTDPKQPAAGIEAVWVNGALSYRDGAV-QPRRAGRFLRRG
DSQ  CCCGACACGGTGCGCGACCTC---GCCACCTTCACCGACCCCAAGCAGCCGGCCGCCGGCATCGAGGCGGTGTGGGTCAACGGCGCGCTGTCGTACCGCGACGGTGCCGTG---CAGCCGCGCCGCGCCGGGCGCTTCCTGCGGCGCGGG
TRN  11011111101111111
NAM  Q87V24_PSESM/430-477
ASQ  PHTVRDI-ADFKDPQRAAEGIDGVWVNGQLSYAEGKP-QGERQGRFLPRS
DSQ  CCGCACACCGTGCGCGACATA---GCAGACTTCAAAGATCCTCAGCGAGCAGCAGAAGGCATTGATGGCGTCTGGGTAAACGGCCAACTGAGCTATGCCGAGGGCAAACCG---CAGGGCGAGCGTCAGGGCAGATTTCTGCCTCGCAGC
TRN  10010101100011011
NAM  Q6LSP3_PHOPR/430-477
ASQ  PAEIKDA-ATFENPKAKAKGIEAVMVNGCISYQKGEV-DAQRSGRFLYRH
DSQ  CCGGCAGAAATTAAAGATGCA---GCCACTTTTGAAAACCCAAAAGCAAAAGCAAAAGGAATTGAAGCCGTTATGGTGAATGGCTGCATTAGTTATCAAAAAGGCGAAGTA---GACGCGCAGCGTTCTGGTCGCTTTCTTTACCGTCAT
TRN  11011101111011011
NAM  Q7MD91_VIBVY/429-476
ASQ  PRTVKDT-ATFENPISLAQGIERVFVNGMLAYFNGQV-SKHRNGMFIYRN
DSQ  CCGAGAACAGTGAAAGATACC---GCTACTTTTGAAAATCCCATTTCGTTAGCGCAAGGCATTGAACGGGTATTCGTTAATGGAATGCTGGCTTATTTTAATGGTCAGGTT---TCAAAACACAGAAACGGAATGTTTATTTATCGAAAT
TRN  10010101100011000
NAM  Q93JK8_STRCO/487-534
ASQ  PATVAAG-SSFDEPRVLPTGIPYVLVDGRFVMEDGRR-TDVLAGRSVRRV
DSQ  CCGGCCACGGTGGCCGCGGGC---AGCTCGTTCGACGAGCCGCGGGTGCTGCCTACGGGCATCCCGTACGTGCTGGTCGACGGGCGTTTCGTGATGGAGGACGGGCGGCGC---ACCGACGTGCTGGCCGGACGGTCGGTGCGCCGGGTT
TRN  11011111101111111
NAM  Q82I76_STRAW/481-528
ASQ  PSTVAAG-STFEDPRRLPAGLPHVLIDGRFVVEDGRR-TDVLAGRAVRRT
DSQ  CCGTCCACCGTCGCGGCCGGC---TCGACCTTCGAGGACCCGCGCAGGCTCCCGGCCGGCCTTCCGCATGTGCTGATCGACGGCCGCTTCGTCGTCGAGGACGGCCGCCGG---ACGGACGTACTGGCGGGGCGGGCGGTCCGCCGGACT
TRN  10010101100011011
NAM  Q8D645_VIBVU/503-551
ASQ  LEDIKVL-ATFEAPNALSEGMHHVIVNGTPIIANGELQLGVNPGEPIRNP
DSQ  CTTGAAGATATCAAAGTGCTT---GCGACTTTCGAAGCCCCTAATGCACTGTCTGAAGGTATGCATCATGTCATTGTTAACGGTACGCCCATCATTGCAAATGGTGAATTACAGTTAGGCGTAAATCCGGGTGAACCCATTCGCAACCCT
TRN  11011101101011010
NAM  Q89DY3_BRAJA/487-535
ASQ  YEKLSDR-ATFTAMNRPSEGVRHLVVSGQPLISDGILDVTARPGRPVRRP
DSQ  TACGAGAAGCTGAGCGACCGC---GCGACGTTCACGGCGATGAACCGGCCGTCCGAGGGCGTGCGGCATCTCGTCGTCAGCGGCCAACCGCTGATCAGCGACGGCATTCTGGATGTGACTGCGCGGCCCGGCCGGCCGGTGCGCCGCCCG
TRN  11011111101111111
NAM  Q6WSB9_9PSEU/367-415
ASQ  PHAITDA-ATYFDPTRPSVGVRHLFVSGVPVVTDGNLRTDAFPGKPLRGE
DSQ  CCGCACGCCATCACCGACGCG---GCGACCTACTTCGACCCGACCCGGCCTTCGGTCGGCGTCCGGCATCTGTTCGTCTCGGGTGTCCCGGTGGTCACCGACGGGAACCTGCGCACGGACGCCTTTCCCGGCAAGCCGTTGCGGGGTGAG
TRN  11011111101111111
NAM  Q7MD66_VIBVY/478-526
ASQ  PETISDV-GTYQDPNHPAVGVHWLLVNGEIVVNNSELDTTVKAGKAIRRT
DSQ  CCAGAAACCATCTCTGATGTC---GGTACTTACCAAGATCCAAACCACCCTGCAGTAGGTGTACATTGGTTGCTGGTCAACGGTGAAATCGTGGTGAACAATAGCGAATTAGACACGACAGTGAAAGCCGGTAAAGCGATTCGCCGTACA
TRN  11011101101011010
NAM  Q9A2U6_CAUCR/523-571
ASQ  PQVAYDLPAGGRRLTQRAHGYVATIVAGVVTQRDGEP-TGALPGRLVRGA
DSQ  CCGCAGGTGGCCTATGACCTGCCCGCCGGCGGCCGTCGTCTGACCCAGCGCGCGCACGGCTATGTCGCCACGATCGTCGCCGGCGTCGTCACCCAGCGCGACGGCGAGCCG---ACCGGGGCCTTGCCCGGCCGACTGGTGCGCGGCGCC
TRN  11011111101111111
NAM  Q89VP1_BRAJA/519-567
ASQ  PKVHYDLPVGGRRLLQDVDGYEATIVSGVVTRRHGAA-TGRRPGKLIRGA
DSQ  CCGAAGGTGCATTACGATCTGCCGGTCGGCGGGCGGCGGCTGTTGCAGGACGTCGACGGCTATGAAGCGACCATCGTGTCGGGCGTGGTGACGCGGCGGCATGGCGCGGCC---ACGGGGCGCCGGCCGGGGAAGTTGATTCGTGGCGCG
TRN  11011111101111111
NAM  Q73RW4_MYCPA/539-587
ASQ  AAMAFDLPAGGNRILQGASGYAATIVSGTVTRRNDVD-TGARPGRLVRGA
DSQ  GCGGCGATGGCCTTCGACCTGCCGGCCGGCGGCAACCGGATCCTGCAGGGCGCCAGCGGTTATGCGGCGACCATCGTCAGCGGGACCGTGACCCGCCGCAACGACGTCGAC---ACCGGGGCCCGGCCCGGCCGCCTGGTCCGCGGGGCG
TRN  11011111101111111
NAM  Q7W724_BORPA/522-570
ASQ  PVMNMDLPAGKGRYLQKPSGYVATIVSGVVVYRDAAA-TGALPGRLVRMA
DSQ  CCCGTCATGAACATGGACCTGCCGGCCGGCAAGGGCCGCTACCTGCAAAAGCCCAGCGGCTATGTGGCGACCATCGTGTCCGGCGTGGTGGTCTACCGCGACGCCGCGGCC---ACCGGCGCGCTGCCGGGCAGGCTGGTGCGCATGGCG
TRN  10010101100011011
NAM  Q73SY3_MYCPA/520-568
ASQ  PVISHDLPAGGRRLDQTADGYVATIVSGEIIAENGVP-TAARPGKLVRGR
DSQ  CCGGTGATCAGTCACGACCTGCCGGCGGGCGGGCGGCGCCTGGATCAGACCGCCGACGGCTACGTCGCCACCATCGTCTCCGGGGAGATCATCGCCGAGAACGGGGTGCCC---ACCGCCGCGCGTCCGGGCAAGTTGGTGCGCGGCCGC
TRN  11011111101111111
NAM  Q82GU7_STRAW/519-567
ASQ  ATLVHDLPGDSPRLDSKAIGVTAVWVNGVEAIRDDVV-TGAVPGKVLRSG
DSQ  GCCACCCTGGTGCACGACCTGCCGGGAGACAGCCCACGGCTCGACTCGAAGGCGATCGGCGTCACGGCCGTGTGGGTCAACGGGGTCGAGGCGATCAGGGACGACGTGGTG---ACCGGCGCCGTACCGGGAAAGGTGCTGCGGTCGGGC
TRN  10010101100011011
//