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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF07497 - Rho_RNA_bind)
FAM  PF07497
PID  Rho_RNA_bind
DES  Rho termination factor, RNA-binding domain
IPR  IPR011113
ANO  17
ALN  81
AID  0.582223
APH  (((((((((RHO_NEIGO/48-126:0.26335,(Q820N0_NITEU/48-126:0.15536,Q8Y057_RALSO/48-126:0.08773):0.02964):0.09593,Q879Y4_XYLFT/56-134:0.21636):0.03255,Q9F7M3_PRB01/48-126:0.27454):0.05359,RHO_BUCAP/48-126:0.13001):0.05453,((RHO_TREPA/147-225:0.14732,Q8F7C5_LEPIN/114-192:0.27061):0.14184,((RHO_RHOSH/52-130:0.23172,Q9A211_CAUCR/111-189:0.15299):0.14483,Q89WP3_BRAJA/51-129:0.06152):0.09233):0.03698):0.06813,O84498_CHLTR/96-175:0.29009):0.10258,RHO_THEMA/55-133:0.29319):0.10982,(RHO_BACSU/51-128:0.02436,Q836E4_ENTFA/52-129:0.26575):0.28836):0.34991,RHO_HELPY/70-148:0.07833,Q9PND9_CAMJE/65-143:0.21597);
ATP  (((((((((RHO_NEIGO/48-126,(Q820N0_NITEU/48-126,Q8Y057_RALSO/48-126)),Q879Y4_XYLFT/56-134),Q9F7M3_PRB01/48-126),RHO_BUCAP/48-126),((RHO_TREPA/147-225,Q8F7C5_LEPIN/114-192),((RHO_RHOSH/52-130,Q9A211_CAUCR/111-189),Q89WP3_BRAJA/51-129))),O84498_CHLTR/96-175),RHO_THEMA/55-133),(RHO_BACSU/51-128,Q836E4_ENTFA/52-129)),RHO_HELPY/70-148,Q9PND9_CAMJE/65-143);
ATL  4.77578
DNO  17
DLN  243
DID  0.569433
DPH  (((((((RHO_BUCAP/48-126:0.20084,Q9F7M3_PRB01/48-126:0.28675):0.09758,Q820N0_NITEU/48-126:0.16690):0.09834,Q879Y4_XYLFT/56-134:0.24091):0.07445,((RHO_TREPA/147-225:0.25132,Q8F7C5_LEPIN/114-192:0.27646):0.08708,(Q89WP3_BRAJA/51-129:0.08635,((RHO_RHOSH/52-130:0.21206,Q9A211_CAUCR/111-189:0.15779):0.07361,(RHO_NEIGO/48-126:0.26868,Q8Y057_RALSO/48-126:0.10234):0.10218):0.03893):0.16963):0.05123):0.04177,((RHO_BACSU/51-128:0.17982,Q836E4_ENTFA/52-129:0.19954):0.20146,O84498_CHLTR/96-175:0.22262):0.06778):0.21904,RHO_THEMA/55-133:0.29286):0.25113,RHO_HELPY/70-148:0.13777,Q9PND9_CAMJE/65-143:0.24441);
DTP  (((((((RHO_BUCAP/48-126,Q9F7M3_PRB01/48-126),Q820N0_NITEU/48-126),Q879Y4_XYLFT/56-134),((RHO_TREPA/147-225,Q8F7C5_LEPIN/114-192),(Q89WP3_BRAJA/51-129,((RHO_RHOSH/52-130,Q9A211_CAUCR/111-189),(RHO_NEIGO/48-126,Q8Y057_RALSO/48-126))))),((RHO_BACSU/51-128,Q836E4_ENTFA/52-129),O84498_CHLTR/96-175)),RHO_THEMA/55-133),RHO_HELPY/70-148,Q9PND9_CAMJE/65-143);
DTL  5.10203
RID  0.582223
RPH  (((((((((RHO_NEIGO/48-126:0.26335,(Q820N0_NITEU/48-126:0.15536,Q8Y057_RALSO/48-126:0.08773):0.02964):0.09593,Q879Y4_XYLFT/56-134:0.21636):0.03255,Q9F7M3_PRB01/48-126:0.27454):0.05359,RHO_BUCAP/48-126:0.13001):0.05453,((RHO_TREPA/147-225:0.14732,Q8F7C5_LEPIN/114-192:0.27061):0.14184,((RHO_RHOSH/52-130:0.23172,Q9A211_CAUCR/111-189:0.15299):0.14483,Q89WP3_BRAJA/51-129:0.06152):0.09233):0.03698):0.06813,O84498_CHLTR/96-175:0.29009):0.10258,RHO_THEMA/55-133:0.29319):0.10982,(RHO_BACSU/51-128:0.02436,Q836E4_ENTFA/52-129:0.26575):0.28836):0.34991,RHO_HELPY/70-148:0.07833,Q9PND9_CAMJE/65-143:0.21597);
RTP  (((((((((RHO_NEIGO/48-126,(Q820N0_NITEU/48-126,Q8Y057_RALSO/48-126)),Q879Y4_XYLFT/56-134),Q9F7M3_PRB01/48-126),RHO_BUCAP/48-126),((RHO_TREPA/147-225,Q8F7C5_LEPIN/114-192),((RHO_RHOSH/52-130,Q9A211_CAUCR/111-189),Q89WP3_BRAJA/51-129))),O84498_CHLTR/96-175),RHO_THEMA/55-133),(RHO_BACSU/51-128,Q836E4_ENTFA/52-129)),RHO_HELPY/70-148,Q9PND9_CAMJE/65-143);
RTL  4.77578
LNK  O84498_CHLTR/96-175:O84498:AE001322
LNK  Q820N0_NITEU/48-126:Q820N0:BX321859
LNK  Q836E4_ENTFA/52-129:Q836E4:AE016950
LNK  Q879Y4_XYLFT/56-134:Q879Y4:AE012561
LNK  Q89WP3_BRAJA/51-129:Q89WP3:BA000040
LNK  Q8F7C5_LEPIN/114-192:Q8F7C5:AE011286
LNK  Q8Y057_RALSO/48-126:Q8Y057:AL646063
LNK  Q9A211_CAUCR/111-189:Q9A211:AE006033
LNK  Q9F7M3_PRB01/48-126:Q9F7M3:AF279106
LNK  Q9PND9_CAMJE/65-143:Q9PND9:AL139077
LNK  RHO_BACSU/51-128:Q03222:M97678
LNK  RHO_BUCAP/48-126:O51891:AE014131
LNK  RHO_HELPY/70-148:P56466:AE000569
LNK  RHO_NEIGO/48-126:Q06447:Z21790
LNK  RHO_RHOSH/52-130:P52156:L76097
LNK  RHO_THEMA/55-133:P38527:L27279
LNK  RHO_TREPA/147-225:O83281:AE001207
AMK  ..xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  ......xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  Q9PND9_CAMJE/65-143
ASQ  f.ILFTGILE.ISSEGYGFLRGMDSNLSDSVNDAYVSNSQIKKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQE
DSQ  ttt...ATACTTTTTACAGGGATTTTAGAA...ATTTCTTCCGAAGGTTATGGCTTTTTAAGAGGTATGGACTCTAATCTTAGCGATAGTGTTAATGACGCTTATGTTTCAAATTCACAAATTAAAAAATTTGCTCTGCGTGTAGGCGATATCGTTACAGGACAAGTTAGAGAACCAAAAGATCAAGAAAAATACTACGCTCTTTTAAAAATCGAAGCGATCAATTATCTGCCTTTACAAGAA
TRN  10010101100011000
NAM  RHO_HELPY/70-148
ASQ  y.ILFTGILE.IMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINYSPSDE
DSQ  tac...ATTCTTTTTACCGGGATTTTAGAA...ATCATGCCTGATGGGTATGGCTTTTTAAGAGGGTTTGATGGGAGTTTTTCAGACGGGCATAACGACACATATGTTAGCCCTTCTCAAATCAGGCGTTTTGCTTTAAGGAATGGCGATATTGTTACCGGTCAAGTGCGATCCCCCAAAGATCAAGAAAAATACTACGCCCTTTTAAAAATAGAAGCTATCAATTACTCGCCTTCAGATGAG
TRN  10010101110011000
NAM  Q9F7M3_PRB01/48-126
ASQ  d.IYGGGVLE.ILNDGFGFLRSPEGSYCAGEDDIYVSPSQIRKFSLRKGDSVAGKIRTPKDKERYFALIQVDTINGEEPRK
DSQ  gat...ATCTATGGTGGCGGAGTTCTTGAG...ATTTTAAATGATGGTTTTGGGTTTTTGCGATCCCCAGAAGGCTCTTATTGCGCTGGCGAAGATGATATCTATGTTTCACCAAGCCAAATAAGAAAGTTTAGCCTCAGGAAGGGAGACTCAGTTGCTGGGAAGATAAGGACCCCTAAAGATAAAGAGCGCTATTTTGCATTAATCCAAGTTGATACTATTAATGGTGAAGAGCCAAGAAAG
TRN  10010101110011000
NAM  Q8Y057_RALSO/48-126
ASQ  t.IFGDGTLE.VLPDGFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNAQPPEA
DSQ  acg...ATTTTCGGCGACGGCACGCTGGAA...GTGCTGCCCGACGGCTTCGGCTTTCTGCGCTCGCCGGAAACGTCGTACCTGGCGAGCACGGACGACATCTACATCAGCCCGTCGCAGATCCGCCGCTTCAACCTGCACACCGGCGACACCATCGAAGGCGAAGTCCGCACGCCCAAGGACGGCGAGCGTTACTTCGCGCTGGTGAAGGTCGACAAGGTCAACGCCCAGCCTCCTGAAGCG
TRN  11011111101111111
NAM  Q820N0_NITEU/48-126
ASQ  s.IFGEGTLE.ILQDGFGFLRSPDTSYLAGPDDIYISPSQIRRFNLHTGDSVDGEIRPPKEGERYFALVKIDKVNNEPPEN
DSQ  agt...ATATTCGGAGAGGGCACACTGGAA...ATTCTGCAAGATGGTTTCGGGTTTTTACGTTCCCCCGATACCTCCTATCTTGCCGGTCCGGATGATATCTATATTTCTCCCAGCCAGATCCGGCGATTCAACCTGCATACTGGTGATTCAGTAGACGGTGAAATACGCCCTCCCAAGGAAGGAGAGCGTTATTTTGCCCTGGTCAAGATAGATAAGGTCAATAATGAACCACCTGAAAAT
TRN  10010111100111000
NAM  Q89WP3_BRAJA/51-129
ASQ  d.IVGEGVVE.VLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEK
DSQ  gac...ATCGTCGGTGAAGGCGTCGTCGAG...GTGCTCTCCGACGGCTTCGGCTTTCTCCGCTCGCCCGATGCCAATTATCTGCCGGGCCCGGACGACATCTACGTTTCGCCTTCGCAGATCCGCCGTTTTGGCCTGCGCACCGGCGACACCATCGAAGGCCACATCCGCAGCCCGAAAGAGGGCGAGCGCTATTTCGCGCTGCTGAAGGTCAATACGCTCAATTTCGAGGACCCGGAAAAG
TRN  11011101101011011
NAM  RHO_BUCAP/48-126
ASQ  d.IFGDGVLE.ILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNAVNYDKPEN
DSQ  gat...ATATTTGGAGATGGTGTTTTAGAA...ATATTACAAGATGGATTTGGTTTTTTACGTTCCGCTGATAGTTCTTATTTAGCTGGTCCTGATGATATATATGTTTCACCAAGTCAAATTCGTAGATTTAATTTACGTACTGGTGATACTATTTCTGGAAAAATAAGACCACCAAAAGAAGGTGAAAGATATTTCGCTCTACTTAAAGTTAATGCAGTAAATTACGATAAGCCTGAAAAT
TRN  10010101110011000
NAM  RHO_NEIGO/48-126
ASQ  g.FTCSGTLE.ILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVRVPKDNERYFALVRLDSINGDHPEV
DSQ  ggt...TTTACCTGCTCCGGCACGCTCGAA...ATCCTGCCCGACGGCTTCGGCTTCCTCCGCAGCGCGGACACGTCCTATCTTGCCGGCCCCGACGACATCTATGTCTCGCCCACTCAAATCCGCCGCTTCAACCTGCATACGGGCGACACCATCGAAGGCAGCGTGCGCGTCCCCAAAGACAACGAACGCTATTTTGCCTTGGTCAGACTGGATTCCATCAATGGCGACCACCCGGAAGTA
TRN  10010101100011011
NAM  Q879Y4_XYLFT/56-134
ASQ  g.VFADGVLE.ILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEA
DSQ  ggc...GTGTTTGCTGACGGCGTTCTGGAA...ATCCTTCCAGATGGTTTTGGCTTTCTGCGCGCAGCCGAAGCCAGCTACTTGGCCGGTCCAGACGATACCTATATTTCCCCCAGTCAAATTCGCCGCTTCAATCTACGCACTGGTGATCACCTGTCGGGCCGGATTCGTTTCCCTAAGGACGGTGAACGGTACTTTGCATTGTCAATCGTTGATACGATTAATGGCGAACCTCTGGAAGCT
TRN  11011111101111101
NAM  Q9A211_CAUCR/111-189
ASQ  e.ISGSGTME.VLQDGFGFLRSPEANYLPGPDDIYVSPSQIRKYGLRTGDSVEGAIRSPREGERYFALTSVTKINFESPDN
DSQ  gag...ATCTCGGGCTCGGGCACCATGGAA...GTTCTGCAGGACGGCTTCGGCTTCCTGCGCTCGCCGGAAGCCAACTACCTGCCGGGTCCGGACGACATCTATGTCTCGCCGTCGCAGATCCGGAAGTATGGCCTGCGCACCGGCGACAGCGTCGAAGGCGCGATCCGATCGCCGCGCGAAGGCGAGCGCTACTTCGCCCTGACCAGCGTCACCAAGATCAATTTCGAGAGCCCCGACAAC
TRN  11011111101111111
NAM  RHO_RHOSH/52-130
ASQ  e.VGGDGVLE.VLQDGFGFLRSPEANYLPGPDDIYVSPEILRQFSLRTGDTIEGVIVAPRENERYFSLTRVTKINFDDPER
DSQ  gaa...GTCGGCGGAGACGGCGTGCTCGAG...GTGCTGCAGGACGGTTTCGGCTTCCTGCGCTCGCCCGAGGCCAACTATCTGCCGGGCCCGGACGACATCTACGTCTCGCCCGAGATCCTGCGTCAGTTCTCGTTGCGCACCGGCGACACGATCGAGGGCGTGATCGTCGCGCCCCGCGAGAACGAACGCTATTTCAGCCTGACGCGGGTGACGAAGATCAACTTCGACGATCCCGAACGG
TRN  11011111101111111
NAM  O84498_CHLTR/96-175
ASQ  efLIGEGVLE.VLPDGFGFLRSPTYNYLPSAEDIYVSPAQIRRFDLKKGDTIVGTIRSPKEKEKYFALLKVDKINGSTPDK
DSQ  gaattcTTGATTGGAGAAGGTGTCCTGGAG...GTTCTCCCGGATGGTTTTGGATTTCTTAGGTCTCCCACTTACAACTATCTTCCTTCCGCAGAAGATATCTATGTTTCTCCTGCGCAGATCCGTCGTTTCGATTTGAAAAAAGGAGATACCATCGTTGGGACGATCCGTTCTCCTAAGGAAAAAGAGAAATATTTTGCGCTGTTGAAAGTGGATAAGATTAATGGCTCAACGCCTGATAAG
TRN  10010101100011001
NAM  Q8F7C5_LEPIN/114-192
ASQ  q.VHAAGVME.KLPDGYGFLRSPDYNYVPGPDDIYVSPSQIKLFGLRTGDTVEGQIRPPKESERFFAMLRVETVNGYTPDV
DSQ  caa...GTCCACGCCGCCGGTGTTATGGAA...AAACTTCCGGACGGATATGGATTTTTACGTTCTCCGGATTACAACTACGTGCCGGGTCCGGATGACATTTATGTTTCTCCTTCTCAGATCAAATTGTTCGGTCTTAGAACCGGGGATACGGTAGAAGGTCAAATTCGTCCTCCCAAAGAATCGGAACGATTTTTTGCCATGCTCCGAGTGGAAACCGTCAACGGTTATACTCCGGACGTA
TRN  10010101110011010
NAM  RHO_TREPA/147-225
ASQ  v.IFASGSLE.ILPDGYGFLRSPQNSYLPGSDDIYVSPSQIRLFNLKTGDTIYGQIRSPKEGERFFAMLRVETVNFEEVAK
DSQ  gtt...ATCTTTGCTTCTGGCTCGCTGGAG...ATATTGCCTGACGGGTATGGTTTTTTGCGTTCACCTCAGAACAGTTATTTGCCCGGTTCCGATGACATCTACGTCTCTCCAAGTCAGATTCGCCTGTTTAATCTGAAAACGGGCGACACCATCTATGGGCAGATTCGCTCCCCTAAGGAGGGAGAGCGTTTCTTTGCAATGCTCCGCGTGGAAACGGTAAACTTCGAAGAAGTAGCAAAG
TRN  10010101100011001
NAM  RHO_THEMA/55-133
ASQ  y.FFGEGVLE.IHPEGFGFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEA
DSQ  tat...TTCTTCGGTGAAGGTGTGTTGGAA...ATTCATCCTGAGGGTTTTGGATTTCTCAGGAGGATAGAAGACAACCTTCTTCCGAGCAACGACGATATATACATATCCCCTTCTCAGATAAGGAAGTTCAACCTGAACACGGGAGATATAATTTCCGGGGTTATAAGAAAACCGAAAGAAGGGGAAAAGTATTTCGCCATGATAAAAATCGAAGCGATAAACTACCGTCCAGTCGAAGCG
TRN  10010101100011011
NAM  Q836E4_ENTFA/52-129
ASQ  f.FFMEGILDiVSQDGYGFLRPI--NYGPSAEDIYISSSQIRRFGLRNGDKVAGKARPPKESERYYGLMHVESVNGKDPEE
DSQ  ttt...TTCTTCATGGAAGGAATTTTAGATattGTTTCTCAGGATGGTTATGGCTTTTTGCGACCAATT------AATTATGGACCAAGTGCAGAAGACATTTATATTTCTTCTTCTCAAATTCGTCGTTTCGGATTGAGAAATGGGGACAAAGTAGCTGGCAAGGCGCGTCCGCCAAAGGAATCAGAACGTTACTATGGACTCATGCATGTTGAAAGTGTCAATGGGAAAGATCCTGAAGAA
TRN  10010101110011000
NAM  RHO_BACSU/51-128
ASQ  l.LFMEGVLEiIQSEGFGFLRPI--NYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVEAVNGDDPES
DSQ  ctg...CTGTTTATGGAAGGCGTTCTCGAGatcATCCAGTCTGAAGGTTTCGGATTCCTGAGACCGATC------AACTACTCTCCAAGCTCAGAAGACATTTACATCTCAGCTTCACAAATCCGCCGTTTCGATTTGCGGAACGGAGACAAAGTATCTGGCAAGGTTCGCCCGCCAAAAGAAAATGAGCGTTACTATGGACTTTTGCACGTTGAAGCAGTAAATGGGGATGATCCCGAATCT
TRN  10010101100011001
//