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PANDIT Protein and Associated NucleotideDomains with Inferred Trees

FAM  PF07361
PID  Cytochrom_B562
DES  Cytochrome b562
IPR  IPR009155
ANO  8
ALN  108
AID  0.304103
APH  ((Q8D455_VIBVU/27-124:0.26463,(Y670_PASMU/23-124:0.62393,(O32554_ECOLI/26-129:1.40382,((C562_ECOLI/23-128:0.30813,C5622_YERPE/23-128:0.41041):0.32921,C5621_YERPE/22-127:0.22636):0.19946):0.69535):0.84398):0.09556,Q87FZ4_VIBPA/23-120:0.23734,Q9KL55_VIBCH/63-160:0.35694);
ATP  ((Q8D455_VIBVU/27-124,(Y670_PASMU/23-124,(O32554_ECOLI/26-129,((C562_ECOLI/23-128,C5622_YERPE/23-128),C5621_YERPE/22-127)))),Q87FZ4_VIBPA/23-120,Q9KL55_VIBCH/63-160);
ATL  5.99512
DNO  8
DLN  324
DID  0.447811
DPH  (((C562_ECOLI/23-128:0.28864,C5622_YERPE/23-128:0.28510):0.17613,C5621_YERPE/22-127:0.25672):0.15758,O32554_ECOLI/26-129:0.71845,(Y670_PASMU/23-124:0.37714,(Q8D455_VIBVU/27-124:0.18305,(Q87FZ4_VIBPA/23-120:0.16192,Q9KL55_VIBCH/63-160:0.36097):0.23678):0.39096):0.21164);
DTP  (((C562_ECOLI/23-128,C5622_YERPE/23-128),C5621_YERPE/22-127),O32554_ECOLI/26-129,(Y670_PASMU/23-124,(Q8D455_VIBVU/27-124,(Q87FZ4_VIBPA/23-120,Q9KL55_VIBCH/63-160))));
DTL  3.89261
RID  0.304103
RPH  ((Q8D455_VIBVU/27-124:0.26463,(Y670_PASMU/23-124:0.62393,(O32554_ECOLI/26-129:1.40382,((C562_ECOLI/23-128:0.30813,C5622_YERPE/23-128:0.41041):0.32921,C5621_YERPE/22-127:0.22636):0.19946):0.69535):0.84398):0.09556,Q87FZ4_VIBPA/23-120:0.23734,Q9KL55_VIBCH/63-160:0.35694);
RTP  ((Q8D455_VIBVU/27-124,(Y670_PASMU/23-124,(O32554_ECOLI/26-129,((C562_ECOLI/23-128,C5622_YERPE/23-128),C5621_YERPE/22-127)))),Q87FZ4_VIBPA/23-120,Q9KL55_VIBCH/63-160);
RTL  5.99512
LNK  C5621_YERPE/22-127:Q9X6B1:AF135170
LNK  C5622_YERPE/23-128:Q8ZAU2:AJ414158
LNK  C562_ECOLI/23-128:P00192:S74736
LNK  O32554_ECOLI/26-129:O32554:X97542
LNK  Q87FZ4_VIBPA/23-120:Q87FZ4:BA000032
LNK  Q8D455_VIBVU/27-124:Q8D455:AE016813
LNK  Q9KL55_VIBCH/63-160:Q9KL55:AE004417
LNK  Y670_PASMU/23-124:Q9CMY0:AE006103
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  C5621_YERPE/22-127
ASQ  ASLQDDMNILIANLGIVSSSTDTKVITSSLEKMRNAALDAQKA-IPPKLEGKAEDSPEIK-DYRHGFDLLIEQIDKTKQWAEEGNIQEVKKSVGEVINIRNTYHSRYR
DSQ  GCGAGCCTTCAGGATGATATGAATATTCTGATAGCCAATTTGGGCATTGTAAGTTCATCAACCGATACAAAGGTCATTACCTCATCACTGGAAAAAATGCGTAATGCCGCCCTTGATGCTCAAAAAGCC---ATTCCACCCAAGCTTGAAGGGAAAGCCGAGGACAGTCCGGAAATAAAA---GACTATCGGCATGGTTTTGATCTACTAATAGAACAAATAGACAAAACCAAACAATGGGCGGAAGAAGGAAATATTCAGGAGGTAAAAAAATCGGTTGGGGAAGTAATCAACATTCGTAATACCTATCATAGTAGATATCGT
TRN  10010101100011001
NAM  C5622_YERPE/23-128
ASQ  ASVADDMETIAEHYGKVLKADSTAVIKQDLQAMRVAAVDAQKG-IPTKLKSKVEDSPEMK-DFRHGMDVLIGEIDGALALADQGKLDEAKQAAQDFKDTRNTYHKKYR
DSQ  GCCAGCGTTGCTGACGATATGGAGACGATTGCCGAGCATTACGGCAAGGTATTGAAGGCCGATTCCACAGCGGTGATTAAACAAGATTTACAGGCGATGCGAGTGGCCGCAGTGGATGCACAAAAGGGC---ATTCCCACAAAATTGAAGAGTAAAGTTGAAGACAGTCCTGAAATGAAG---GATTTTCGCCATGGCATGGATGTGCTGATTGGGGAAATTGATGGGGCGCTGGCCTTGGCGGATCAAGGTAAGTTGGATGAAGCAAAGCAAGCGGCACAAGATTTTAAAGACACCCGCAATACCTATCACAAAAAGTACCGC
TRN  11011101101011010
NAM  C562_ECOLI/23-128
ASQ  ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKA-TPPKLEDKSPDSPEMK-DFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKYR
DSQ  GCTGATCTTGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGATCGAAAAAGCGGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATGCGCGCCGCAGCCCTGGATGCGCAAAAAGCA---ACGCCGCCGAAGCTCGAAGATAAATCACCGGACAGCCCGGAAATGAAA---GATTTCCGCCACGGTTTCGACATTCTGGTCGGTCAGATTGACGACGCGCTGAAGCTGGCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAACGCCTATCACCAGAAGTATCGT
TRN  11011101101011000
NAM  O32554_ECOLI/26-129
ASQ  EELDESMQVLARNMSVLQSSMDKKELLEALDRMDDAVDESMKR-LPESI---SPADEEGKNDYIKELQKLEKEIMLAKQKVLSGQLSDIPDSVNKMNKIRVEGHDKFR
DSQ  GAAGAACTTGATGAAAGCATGCAAGTTCTTGCAAGGAATATGAGTGTACTTCAGTCATCAATGGATAAAAAGGAGCTTCTTGAAGCTCTTGACAGAATGGATGATGCTGTAGATGAGTCAATGAAGCGT---CTTCCTGAGAGCATT---------TCACCGGCTGATGAAGAAGGGAAGAATGACTATATAAAAGAACTTCAAAAGCTTGAAAAAGAGATTATGCTGGCGAAACAAAAAGTCTTATCGGGACAGTTATCAGATATACCCGATTCGGTAAACAAGATGAATAAAATCAGAGTTGAGGGGCATGATAAATTCAGA
TRN  10010101100011000
NAM  Q9KL55_VIBCH/63-160
ASQ  QDLKSIMQDMKLAFKQAAEATTVEAMQAPISTLESLVEQAKRGVYPVEK---------EA-TYQEGFQKLAVTLDKIDAHLQAGELEAAKASLKTVDDLRIEYHDKRN
DSQ  CAAGATCTTAAATCAATCATGCAGGACATGAAGCTCGCCTTTAAACAGGCCGCAGAAGCGACAACCGTTGAAGCGATGCAAGCACCGATTTCTACCCTCGAAAGCTTGGTTGAGCAAGCCAAACGAGGTGTTTATCCTGTTGAAAAA---------------------------GAAGCC---ACTTACCAAGAAGGCTTCCAAAAGCTCGCGGTGACTTTGGATAAAATAGACGCTCATTTGCAAGCCGGTGAACTCGAGGCAGCAAAAGCTAGCCTAAAAACCGTTGATGATCTGCGAATTGAATACCATGACAAACGCAAT
TRN  10010101100011001
NAM  Q87FZ4_VIBPA/23-120
ASQ  VDLKQNMKQMKMEFKQAAEASDVETMKSAIDSLQAIVEQSKRGNYPPEK---------FD-TYLEGFNKLSVTLDKIEADLDAGNLTEAKAQLREIDSLREEYHDKRN
DSQ  GTTGATTTGAAGCAAAACATGAAGCAGATGAAGATGGAATTCAAACAGGCCGCAGAAGCGTCTGACGTGGAAACCATGAAATCAGCGATTGATAGCTTGCAAGCCATTGTAGAACAGTCAAAACGTGGTAATTACCCACCAGAAAAG---------------------------TTTGAT---ACTTACCTAGAAGGTTTCAACAAGCTGTCGGTAACGCTAGACAAAATCGAAGCGGATCTGGATGCAGGTAATTTGACAGAAGCAAAAGCGCAACTGCGTGAGATCGATAGCCTTCGTGAAGAGTACCACGACAAGCGTAAT
TRN  11011101101011001
NAM  Q8D455_VIBVU/27-124
ASQ  VDLKANMKEMKLEFRQAAEAQDIESMQAAVNQLRSLVENSKTGEYAPEK---------ND-LYHEGFNKLTVALDKVNGELEQGNLEAAKQALVEVDELRKEYHEKKK
DSQ  GTGGATTTAAAAGCCAACATGAAAGAGATGAAGTTGGAATTTCGTCAAGCTGCGGAAGCTCAGGATATTGAGTCTATGCAAGCGGCTGTTAACCAATTGCGCTCGCTGGTGGAAAACTCAAAAACCGGCGAATACGCACCGGAGAAA---------------------------AACGAC---TTGTATCATGAAGGTTTTAACAAGCTGACAGTGGCGCTTGATAAAGTGAATGGTGAGCTTGAACAGGGAAATCTTGAAGCTGCCAAGCAAGCTCTGGTTGAAGTGGATGAGTTGCGTAAAGAATACCACGAGAAGAAGAAA
TRN  11011101101011000
NAM  Y670_PASMU/23-124
ASQ  ANVRAEMNQMKTVAATLTNAKDVAEFQESAKILREIAQQSSEK-RPSSI----TNDADFK-GYQEGMKEFITALDEADKLAQEGNLDAAKTAAKKLFDIRNVYHKKYK
DSQ  GCAAATGTACGTGCAGAAATGAATCAAATGAAAACAGTTGCCGCCACCTTAACTAACGCAAAAGATGTCGCTGAATTTCAAGAATCTGCGAAAATATTGCGTGAAATTGCGCAACAATCTAGTGAAAAA---AGACCATCAAGTATT------------ACAAATGATGCGGATTTTAAA---GGTTATCAAGAGGGGATGAAAGAGTTTATCACTGCTCTTGATGAAGCGGATAAACTGGCTCAAGAGGGAAATTTAGACGCAGCTAAAACCGCCGCGAAAAAATTATTTGATATTCGTAACGTTTATCACAAAAAATATAAA
TRN  10010101100011000
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