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PANDIT Protein and Associated NucleotideDomains with Inferred Trees

FAM  PF06696
PID  Strep_SA_rep
DES  Streptococcal surface antigen repeat
IPR  IPR009578
ANO  19
ALN  25
AID  0.511564
APH  ((((((((Q53414_9STRE/203-227:0.06201,SSP5_STRGN/200-224:0.16083):0.18623,(Q53414_9STRE/285-309:0.16827,Q9LBG3_9STRE/368-392:0.09980):0.09982):0.04705,((O05158_STRMU/365-389:0.00000,(SSP5_STRGN/364-388:0.22741,(Q54183_STRGN/270-294:0.22287,Q54185_STRGN/364-388:0.08528):0.14160):0.00000):0.26047,O05158_STRMU/201-225:0.15760):0.02149):0.05291,(((SPAA_STRDO/320-344:0.20495,O05158_STRMU/226-250:0.26723):0.00000,(O05158_STRMU/308-332:0.09787,Q54183_STRGN/213-237:0.14809):0.07325):0.23901,O05158_STRMU/283-307:0.19736):0.01842):0.18842,Q24984_GIALA/1310-1334:0.55783):0.27059,Q9LBG3_9STRE/614-638:0.21367):0.04652,O05158_STRMU/447-471:0.00000):0.15511,Q53414_9STRE/449-473:0.25403,Q54183_STRGN/434-458:0.11086);
ATP  ((((((((Q53414_9STRE/203-227,SSP5_STRGN/200-224),(Q53414_9STRE/285-309,Q9LBG3_9STRE/368-392)),((O05158_STRMU/365-389,(SSP5_STRGN/364-388,(Q54183_STRGN/270-294,Q54185_STRGN/364-388))),O05158_STRMU/201-225)),(((SPAA_STRDO/320-344,O05158_STRMU/226-250),(O05158_STRMU/308-332,Q54183_STRGN/213-237)),O05158_STRMU/283-307)),Q24984_GIALA/1310-1334),Q9LBG3_9STRE/614-638),O05158_STRMU/447-471),Q53414_9STRE/449-473,Q54183_STRGN/434-458);
ATL  5.09914
DNO  19
DLN  75
DID  0.567797
DPH  (((((((((O05158_STRMU/365-389:0.13782,(SSP5_STRGN/364-388:0.15123,(Q54183_STRGN/270-294:0.21596,Q54185_STRGN/364-388:0.07447):0.08134):0.01743):0.19109,O05158_STRMU/201-225:0.05789):0.03286,(((SPAA_STRDO/320-344:0.22660,O05158_STRMU/308-332:0.18163):0.01823,(O05158_STRMU/226-250:0.25429,Q54183_STRGN/213-237:0.18220):0.08397):0.14522,O05158_STRMU/283-307:0.23123):0.08180):0.00000,(Q53414_9STRE/203-227:0.08898,SSP5_STRGN/200-224:0.19838):0.09856):0.06420,(Q53414_9STRE/285-309:0.13257,Q9LBG3_9STRE/368-392:0.12080):0.09301):0.13458,Q24984_GIALA/1310-1334:0.65879):0.07123,Q9LBG3_9STRE/614-638:0.08652):0.09810,O05158_STRMU/447-471:0.08246):0.06266,Q53414_9STRE/449-473:0.33923,Q54183_STRGN/434-458:0.11725);
DTP  (((((((((O05158_STRMU/365-389,(SSP5_STRGN/364-388,(Q54183_STRGN/270-294,Q54185_STRGN/364-388))),O05158_STRMU/201-225),(((SPAA_STRDO/320-344,O05158_STRMU/308-332),(O05158_STRMU/226-250,Q54183_STRGN/213-237)),O05158_STRMU/283-307)),(Q53414_9STRE/203-227,SSP5_STRGN/200-224)),(Q53414_9STRE/285-309,Q9LBG3_9STRE/368-392)),Q24984_GIALA/1310-1334),Q9LBG3_9STRE/614-638),O05158_STRMU/447-471),Q53414_9STRE/449-473,Q54183_STRGN/434-458);
DTL  4.8206
RID  0.511564
RPH  ((((((((Q53414_9STRE/203-227:0.06201,SSP5_STRGN/200-224:0.16083):0.18623,(Q53414_9STRE/285-309:0.16827,Q9LBG3_9STRE/368-392:0.09980):0.09982):0.04705,((O05158_STRMU/365-389:0.00000,(SSP5_STRGN/364-388:0.22741,(Q54183_STRGN/270-294:0.22287,Q54185_STRGN/364-388:0.08528):0.14160):0.00000):0.26047,O05158_STRMU/201-225:0.15760):0.02149):0.05291,(((SPAA_STRDO/320-344:0.20495,O05158_STRMU/226-250:0.26723):0.00000,(O05158_STRMU/308-332:0.09787,Q54183_STRGN/213-237:0.14809):0.07325):0.23901,O05158_STRMU/283-307:0.19736):0.01842):0.18842,Q24984_GIALA/1310-1334:0.55783):0.27059,Q9LBG3_9STRE/614-638:0.21367):0.04652,O05158_STRMU/447-471:0.00000):0.15511,Q53414_9STRE/449-473:0.25403,Q54183_STRGN/434-458:0.11086);
RTP  ((((((((Q53414_9STRE/203-227,SSP5_STRGN/200-224),(Q53414_9STRE/285-309,Q9LBG3_9STRE/368-392)),((O05158_STRMU/365-389,(SSP5_STRGN/364-388,(Q54183_STRGN/270-294,Q54185_STRGN/364-388))),O05158_STRMU/201-225)),(((SPAA_STRDO/320-344,O05158_STRMU/226-250),(O05158_STRMU/308-332,Q54183_STRGN/213-237)),O05158_STRMU/283-307)),Q24984_GIALA/1310-1334),Q9LBG3_9STRE/614-638),O05158_STRMU/447-471),Q53414_9STRE/449-473,Q54183_STRGN/434-458);
RTL  5.09914
LNK  O05158_STRMU/201-225:O05158:D78181
LNK  O05158_STRMU/226-250:O05158:D78181
LNK  O05158_STRMU/283-307:O05158:D78181
LNK  O05158_STRMU/308-332:O05158:D78181
LNK  O05158_STRMU/365-389:O05158:D78181
LNK  O05158_STRMU/447-471:O05158:D78181
LNK  Q24984_GIALA/1310-1334:Q24984:X79815
LNK  Q53414_9STRE/203-227:Q53414:S70345
LNK  Q53414_9STRE/285-309:Q53414:S70345
LNK  Q53414_9STRE/449-473:Q53414:S70345
LNK  Q54183_STRGN/213-237:Q54183:U40025
LNK  Q54183_STRGN/270-294:Q54183:U40025
LNK  Q54183_STRGN/434-458:Q54183:U40025
LNK  Q54185_STRGN/364-388:Q54185:U40027
LNK  Q9LBG3_9STRE/368-392:Q9LBG3:AB042239
LNK  Q9LBG3_9STRE/614-638:Q9LBG3:AB042239
LNK  SPAA_STRDO/320-344:P21979:X57841
LNK  SSP5_STRGN/200-224:P16952:U40026
LNK  SSP5_STRGN/364-388:P16952:U40026
AMK  xxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  Q9LBG3_9STRE/614-638
ASQ  ADYEAKLAKYQQDLTQYQKDFADYQ
DSQ  GCTGACTATGAAGCCAAATTAGCTAAATATCAACAAGACTTAACCCAATACCAAAAAGATTTTGCTGACTATCAA
TRN  11111101111011010
NAM  Q54183_STRGN/434-458
ASQ  TDYEAKLAKYEADLAKYKKKLAEYP
DSQ  ACTGACTATGAAGCAAAATTAGCTAAATATGAAGCTGATCTTGCCAAATATAAGAAAAAGTTGGCTGAATATCCG
TRN  11011101111011010
NAM  O05158_STRMU/447-471
ASQ  ADYEAKLAKYQADLAKYQKDLADYP
DSQ  GCTGATTACGAAGCAAAACTTGCTAAGTATCAAGCAGATCTTGCCAAATATCAAAAAGATTTAGCAGACTATCCA
TRN  11011101111011010
NAM  Q53414_9STRE/449-473
ASQ  TDYELKLSKYQEELAQYKKDLAEYP
DSQ  ACAGACTATGAACTCAAACTGTCTAAGTACCAAGAAGAGCTTGCTCAGTACAAGAAGGACCTAGCGGAATACCCA
TRN  11011101101011011
NAM  Q9LBG3_9STRE/368-392
ASQ  ADYEAKLAQYQNDLAVVQAGNAANE
DSQ  GCTGATTACGAAGCCAAATTGGCCCAATATCAAAACGATCTAGCGGTAGTCCAAGCAGGGAATGCAGCCAATGAA
TRN  11011101111011011
NAM  Q53414_9STRE/285-309
ASQ  ADYEAKLAQYEKDLAAAQSGNATNE
DSQ  GCAGATTACGAAGCCAAGTTGGCTCAATATGAAAAAGATTTAGCCGCAGCCCAGTCTGGTAATGCTACAAATGAA
TRN  11111101111011010
NAM  O05158_STRMU/201-225
ASQ  TAYEAKLAQYQADLAAVQKTNAANQ
DSQ  ACAGCTTATGAAGCTAAATTGGCTCAATATCAAGCAGATTTAGCAGCCGTTCAAAAAACCAATGCTGCCAATCAA
TRN  11111101111011010
NAM  SSP5_STRGN/200-224
ASQ  AEYEAKLAQYQKDLATVKKANEDSQ
DSQ  GCAGAATATGAGGCTAAGCTAGCACAATATCAAAAAGATTTAGCAACTGTCAAAAAAGCAAATGAAGATAGTCAA
TRN  11011101111011010
NAM  Q53414_9STRE/203-227
ASQ  ADYEAKLAQYQKDLAAVQQANNDSQ
DSQ  GCTGATTACGAAGCTAAGCTGGCTCAATATCAAAAGGACCTAGCAGCCGTTCAACAAGCTAATAATGACAGTCAA
TRN  11011111101111111
NAM  Q54185_STRGN/364-388
ASQ  ATYEAALKQYEADLAAAKKANEDSD
DSQ  GCGACTTATGAAGCAGCATTGAAGCAATATGAAGCAGATTTGGCAGCTGCAAAGAAAGCCAACGAAGACAGTGAT
TRN  11111101111011011
NAM  Q54183_STRGN/270-294
ASQ  ANYDAAMKQYEADLAAIKKAKEDND
DSQ  GCCAACTATGACGCAGCCATGAAGCAGTATGAAGCAGATCTTGCGGCTATTAAAAAAGCTAAGGAAGATAATGAT
TRN  11011101111011011
NAM  SSP5_STRGN/364-388
ASQ  ATYDAAVKKYEADLAAVKQANATNE
DSQ  GCGACTTATGACGCAGCGGTGAAGAAATACGAAGCAGATTTGGCGGCAGTTAAGCAAGCAAATGCTACCAATGAA
TRN  11111101111011011
NAM  O05158_STRMU/365-389
ASQ  ATYEAALKQYEADLAAVKKANAANE
DSQ  GCGACTTATGAAGCTGCACTCAAGCAATATGAGGCCGATTTGGCAGCGGTGAAAAAAGCTAATGCCGCAAACGAA
TRN  11011101111011011
NAM  Q54183_STRGN/213-237
ASQ  LDYQNKLSAYQAELARVQKANAEAK
DSQ  CTTGATTATCAAAATAAGCTTTCAGCTTACCAAGCAGAATTGGCTCGTGTTCAAAAAGCGAATGCTGAAGCTAAA
TRN  11011101111011001
NAM  O05158_STRMU/308-332
ASQ  ADYQAKLTAYQTELARVQKANADAK
DSQ  GCAGACTATCAAGCTAAATTGACCGCCTATCAAACAGAGCTCGCTCGCGTTCAAAAAGCCAATGCGGATGCTAAA
TRN  11011101111011011
NAM  SPAA_STRDO/320-344
ASQ  ADYQAKKAAYEQELARVQAANAAAK
DSQ  GCTGACTACCAAGCTAAGAAGGCAGCTTATGAACAAGAGTTAGCACGCGTGCAAGCCGCTAATGCAGCTGCCAAG
TRN  11111111111111110
NAM  O05158_STRMU/283-307
ASQ  AEYETKLAQYQAELKRVQEANAANE
DSQ  GCTGAATATGAGACTAAGTTAGCTCAATATCAAGCTGAACTAAAGCGTGTTCAGGAAGCTAATGCCGCAAACGAA
TRN  11011111111111110
NAM  O05158_STRMU/226-250
ASQ  AAYQKALAAYQAELKRVQEANAAAK
DSQ  GCAGCCTATCAAAAAGCCCTTGCTGCTTATCAGGCTGAACTGAAACGTGTTCAGGAAGCTAATGCAGCCGCCAAA
TRN  11011101101011011
NAM  Q24984_GIALA/1310-1334
ASQ  SEKDEKLAKMEADLARVQKELRALE
DSQ  AGTGAAAAGGACGAAAAACTCGCCAAAATGGAGGCGGATTTGGCCAGGGTCCAAAAGGAGCTTCGTGCGTTAGAG
TRN  10010101110011010
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