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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF05923 - APC_crr)
FAM  PF05923
PID  APC_crr
DES  APC cysteine-rich region
IPR  IPR009223
ANO  27
ALN  30
AID  0.371334
APH  (((((((((APC_HUMAN/2006-2031:0.33922,(APC_RAT/1838-1864:0.35526,(P91667_DROME/902-927:0.00000,Q961B0_DROME/594-619:0.30280):0.32390):0.36202):0.05991,APC_RAT/1946-1971:0.15617):0.22749,((O95996_HUMAN/1385-1410:0.49037,(Q8WS39_9UROC/951-976:0.91155,APC_RAT/1634-1659:0.00000):0.19225):0.35574,(((O95996_HUMAN/1257-1282:0.51116,APC_RAT/1484-1509:0.45063):0.33409,((P91667_DROME/1065-1090:0.28133,Q961B0_DROME/736-761:0.00000):0.16115,(P91667_DROME/1245-1270:0.00000,Q961B0_DROME/861-886:0.33312):0.62898):0.00000):0.33061,((Q8WS39_9UROC/506-534:0.71383,Q8WS39_9UROC/1038-1065:0.34408):0.65358,(P91667_DROME/1140-1165:0.19572,(P91667_DROME/836-861:0.69827,Q961B0_DROME/783-808:0.23416):0.00000):0.36452):0.12371):0.05986):0.26455):0.17586,APC_HUMAN/1256-1281:0.00000):0.37365,O95996_HUMAN/1052-1077:0.51929):0.19634,O95996_HUMAN/1562-1587:0.88713):0.25806,(O95996_HUMAN/1144-1169:0.32348,APC_RAT/1366-1391:0.02447):0.19992):0.38537,Q8WS39_9UROC/569-595:0.25785):0.65093,P91667_DROME/964-989:0.00000,Q961B0_DROME/644-669:0.30533);
ATP  (((((((((APC_HUMAN/2006-2031,(APC_RAT/1838-1864,(P91667_DROME/902-927,Q961B0_DROME/594-619))),APC_RAT/1946-1971),((O95996_HUMAN/1385-1410,(Q8WS39_9UROC/951-976,APC_RAT/1634-1659)),(((O95996_HUMAN/1257-1282,APC_RAT/1484-1509),((P91667_DROME/1065-1090,Q961B0_DROME/736-761),(P91667_DROME/1245-1270,Q961B0_DROME/861-886))),((Q8WS39_9UROC/506-534,Q8WS39_9UROC/1038-1065),(P91667_DROME/1140-1165,(P91667_DROME/836-861,Q961B0_DROME/783-808)))))),APC_HUMAN/1256-1281),O95996_HUMAN/1052-1077),O95996_HUMAN/1562-1587),(O95996_HUMAN/1144-1169,APC_RAT/1366-1391)),Q8WS39_9UROC/569-595),P91667_DROME/964-989,Q961B0_DROME/644-669);
ATL  15.1487
DNO  27
DLN  90
DID  0.414887
DPH  (P91667_DROME/1245-1270:0.05808,(((Q8WS39_9UROC/1038-1065:0.58612,P91667_DROME/836-861:0.43931):0.13348,(Q961B0_DROME/783-808:0.20374,P91667_DROME/1140-1165:0.23236):0.26313):0.23971,((Q961B0_DROME/736-761:0.10565,P91667_DROME/1065-1090:0.19101):0.03225,((O95996_HUMAN/1385-1410:0.37146,((APC_RAT/1634-1659:0.48005,(APC_RAT/1838-1864:0.48148,(APC_RAT/1366-1391:0.41978,(P91667_DROME/902-927:0.20059,Q961B0_DROME/594-619:0.19040):0.36625):0.15567):0.00000):0.07818,((((APC_HUMAN/2006-2031:0.26970,(APC_HUMAN/1256-1281:0.26565,((Q961B0_DROME/644-669:0.27509,P91667_DROME/964-989:0.21805):0.47581,Q8WS39_9UROC/569-595:0.34200):0.16423):0.19123):0.11089,APC_RAT/1946-1971:0.15635):0.13368,(((O95996_HUMAN/1144-1169:0.48065,Q8WS39_9UROC/506-534:0.83268):0.12199,O95996_HUMAN/1052-1077:0.51879):0.09831,O95996_HUMAN/1562-1587:0.58059):0.00000):0.00000,Q8WS39_9UROC/951-976:0.98858):0.00000):0.33511):0.10356,(APC_RAT/1484-1509:0.40394,O95996_HUMAN/1257-1282:0.31652):0.18884):0.08318):0.00000):0.49014,Q961B0_DROME/861-886:0.27263);
DTP  (P91667_DROME/1245-1270,(((Q8WS39_9UROC/1038-1065,P91667_DROME/836-861),(Q961B0_DROME/783-808,P91667_DROME/1140-1165)),((Q961B0_DROME/736-761,P91667_DROME/1065-1090),((O95996_HUMAN/1385-1410,((APC_RAT/1634-1659,(APC_RAT/1838-1864,(APC_RAT/1366-1391,(P91667_DROME/902-927,Q961B0_DROME/594-619)))),((((APC_HUMAN/2006-2031,(APC_HUMAN/1256-1281,((Q961B0_DROME/644-669,P91667_DROME/964-989),Q8WS39_9UROC/569-595))),APC_RAT/1946-1971),(((O95996_HUMAN/1144-1169,Q8WS39_9UROC/506-534),O95996_HUMAN/1052-1077),O95996_HUMAN/1562-1587)),Q8WS39_9UROC/951-976))),(APC_RAT/1484-1509,O95996_HUMAN/1257-1282)))),Q961B0_DROME/861-886);
DTL  12.6354
RID  0.371334
RPH  (((((((((APC_HUMAN/2006-2031:0.33922,(APC_RAT/1838-1864:0.35526,(P91667_DROME/902-927:0.00000,Q961B0_DROME/594-619:0.30280):0.32390):0.36202):0.05991,APC_RAT/1946-1971:0.15617):0.22749,((O95996_HUMAN/1385-1410:0.49037,(Q8WS39_9UROC/951-976:0.91155,APC_RAT/1634-1659:0.00000):0.19225):0.35574,(((O95996_HUMAN/1257-1282:0.51116,APC_RAT/1484-1509:0.45063):0.33409,((P91667_DROME/1065-1090:0.28133,Q961B0_DROME/736-761:0.00000):0.16115,(P91667_DROME/1245-1270:0.00000,Q961B0_DROME/861-886:0.33312):0.62898):0.00000):0.33061,((Q8WS39_9UROC/506-534:0.71383,Q8WS39_9UROC/1038-1065:0.34408):0.65358,(P91667_DROME/1140-1165:0.19572,(P91667_DROME/836-861:0.69827,Q961B0_DROME/783-808:0.23416):0.00000):0.36452):0.12371):0.05986):0.26455):0.17586,APC_HUMAN/1256-1281:0.00000):0.37365,O95996_HUMAN/1052-1077:0.51929):0.19634,O95996_HUMAN/1562-1587:0.88713):0.25806,(O95996_HUMAN/1144-1169:0.32348,APC_RAT/1366-1391:0.02447):0.19992):0.38537,Q8WS39_9UROC/569-595:0.25785):0.65093,P91667_DROME/964-989:0.00000,Q961B0_DROME/644-669:0.30533);
RTP  (((((((((APC_HUMAN/2006-2031,(APC_RAT/1838-1864,(P91667_DROME/902-927,Q961B0_DROME/594-619))),APC_RAT/1946-1971),((O95996_HUMAN/1385-1410,(Q8WS39_9UROC/951-976,APC_RAT/1634-1659)),(((O95996_HUMAN/1257-1282,APC_RAT/1484-1509),((P91667_DROME/1065-1090,Q961B0_DROME/736-761),(P91667_DROME/1245-1270,Q961B0_DROME/861-886))),((Q8WS39_9UROC/506-534,Q8WS39_9UROC/1038-1065),(P91667_DROME/1140-1165,(P91667_DROME/836-861,Q961B0_DROME/783-808)))))),APC_HUMAN/1256-1281),O95996_HUMAN/1052-1077),O95996_HUMAN/1562-1587),(O95996_HUMAN/1144-1169,APC_RAT/1366-1391)),Q8WS39_9UROC/569-595),P91667_DROME/964-989,Q961B0_DROME/644-669);
RTL  15.1487
LNK  APC_HUMAN/1256-1281:P25054:M74088
LNK  APC_HUMAN/2006-2031:P25054:M74088
LNK  APC_RAT/1366-1391:P70478:D38629
LNK  APC_RAT/1484-1509:P70478:D38629
LNK  APC_RAT/1634-1659:P70478:D38629
LNK  APC_RAT/1838-1864:P70478:D38629
LNK  APC_RAT/1946-1971:P70478:D38629
LNK  O95996_HUMAN/1052-1077:O95996:AB022529
LNK  O95996_HUMAN/1144-1169:O95996:AB022529
LNK  O95996_HUMAN/1257-1282:O95996:AB022529
LNK  O95996_HUMAN/1385-1410:O95996:AB022529
LNK  O95996_HUMAN/1562-1587:O95996:AB022529
LNK  P91667_DROME/1065-1090:P91667:U77947
LNK  P91667_DROME/1140-1165:P91667:U77947
LNK  P91667_DROME/1245-1270:P91667:U77947
LNK  P91667_DROME/836-861:P91667:U77947
LNK  P91667_DROME/902-927:P91667:U77947
LNK  P91667_DROME/964-989:P91667:U77947
LNK  Q8WS39_9UROC/1038-1065:Q8WS39:AF374375
LNK  Q8WS39_9UROC/506-534:Q8WS39:AF374375
LNK  Q8WS39_9UROC/569-595:Q8WS39:AF374375
LNK  Q8WS39_9UROC/951-976:Q8WS39:AF374375
LNK  Q961B0_DROME/594-619:Q961B0:AY051719
LNK  Q961B0_DROME/644-669:Q961B0:AY051719
LNK  Q961B0_DROME/736-761:Q961B0:AY051719
LNK  Q961B0_DROME/783-808:Q961B0:AY051719
LNK  Q961B0_DROME/861-886:Q961B0:AY051719
AMK  xxxxxxxxx.xxxxxxxxxxxxx.xxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx
NAM  Q961B0_DROME/861-886
ASQ  SDEMSKYYV.EDSPC-TFSVIS-.GLSHLT
DSQ  TCGGATGAAATGAGCAAGTACTATGTC...GAGGACAGTCCCTGC---ACGTTTTCGGTCATCTCG---...GGACTATCCCATCTCACT
TRN  11011111111111111
NAM  P91667_DROME/1245-1270
ASQ  ADEMNKFLV.EDSPC-NFSVVS-.GLSNLT
DSQ  GCCGATGAAATGAACAAGTTTTTGGTG...GAGGACAGTCCCTGT---AACTTCTCAGTGGTCTCT---...GGTTTATCTAATCTCACC
TRN  11011111111111100
NAM  Q961B0_DROME/736-761
ASQ  EDKLNRFHV.EHTPA-AFSCAT-.SLSNLS
DSQ  GAGGACAAGTTGAACAGATTCCACGTG...GAGCACACGCCTGCT---GCCTTCTCCTGCGCCACC---...AGTCTAAGTAATCTGAGC
TRN  10010101100011011
NAM  P91667_DROME/1065-1090
ASQ  EDDLSSFNV.EHTPA-QFSTAT-.SLSNLS
DSQ  GAGGACGACCTGAGTAGCTTCAACGTG...GAGCATACACCTGCT---CAGTTCTCCACGGCCACC---...AGTTTGAGCAACCTGAGC
TRN  11011111101111111
NAM  APC_RAT/1484-1509
ASQ  ADTLLHFAT.ESTPD-GFSCSS-.SLSALS
DSQ  GCCGACACTCTGTTACACTTTGCCACA...GAGAGTACTCCAGAT---GGGTTTTCTTGTTCCTCT---...AGCCTAAGTGCTCTGAGT
TRN  11011111101111110
NAM  APC_RAT/1634-1659
ASQ  DDVPRVYCV.EGTPI-NFSTAT-.SLSDLT
DSQ  GACGATGTGCCCCGAGTGTACTGTGTG...GAAGGGACGCCTATA---AACTTCTCCACAGCAACA---...TCTCTGAGTGATCTCACA
TRN  10010111100111011
NAM  O95996_HUMAN/1385-1410
ASQ  EDDSCTDSA.EGTPV-NFSSAA-.SLSDET
DSQ  GAGGACGACTCCTGCACTGACTCCGCG...GAGGGCACGCCGGTC---AACTTCTCTAGCGCCGCC---...TCGCTCAGCGACGAGACG
TRN  11011111111111111
NAM  O95996_HUMAN/1257-1282
ASQ  DAGSVRFTV.-EKPDENFSCAS-.SLSALA
DSQ  GACGCAGGCAGCGTGCGCTTTACCGTG...---GAGAAGCCAGACGAGAACTTCTCGTGCGCCTCC---...AGCCTCAGCGCGCTGGCC
TRN  11011111101111111
NAM  Q961B0_DROME/594-619
ASQ  AERPINYCE.EGTPG-SFSRFD-.SLNSLT
DSQ  GCAGAGCGACCAATAAACTACTGTGAA...GAAGGGACTCCCGGC---AGCTTCAGTCGCTTCGAC---...TCGCTCAACAGCCTCACA
TRN  10010111110111011
NAM  P91667_DROME/902-927
ASQ  PEKPINYCE.EGTPG-YFSRYD-.SLSSLD
DSQ  CCAGAGAAACCCATTAACTACTGCGAG...GAGGGAACTCCTGGG---TACTTTAGTCGCTACGAT---...TCACTGAGCAGCTTGGAT
TRN  11011101101011001
NAM  APC_RAT/1838-1864
ASQ  FDSPHHYAPiEGTPY-CFSRND-.SLSSLD
DSQ  TTCGATTCACCGCATCATTACGCACCCattGAAGGGACTCCTTAC---TGCTTCTCACGAAATGAC---...TCTTTGAGTTCTCTAGAT
TRN  11011111111111101
NAM  APC_HUMAN/2006-2031
ASQ  GYAPKSFHV.EDTPV-CFSRNS-.SLSSLS
DSQ  GGCTATGCTCCTAAATCATTTCATGTT...GAAGATACCCCAGTT---TGTTTCTCAAGAAACAGT---...TCTCTCAGTTCTCTTAGT
TRN  10010101110011001
NAM  APC_RAT/1946-1971
ASQ  DEKLQNFAI.ENTPV-CFSRNS-.SLSSLS
DSQ  GACGAAAAACTGCAGAATTTTGCTATT...GAAAATACACCGGTT---TGCTTTTCTCGAAATTCT---...TCTCTGAGCTCCCTTAGT
TRN  11011101101011011
NAM  APC_HUMAN/1256-1281
ASQ  QETIQTYCV.EDTPI-CFSRCS-.SLSSLS
DSQ  CAAGAAACAATACAGACTTATTGTGTA...GAAGATACTCCAATA---TGTTTTTCAAGATGTAGT---...TCATTATCATCTTTGTCA
TRN  10010101110011000
NAM  Q8WS39_9UROC/951-976
ASQ  NEFSYVFAI.EGTPA-NLSART-.SFSNIT
DSQ  AATGAATTTTCATATGTATTCGCAATA...GAGGGAACCCCGGCA---AATCTCTCTGCAAGAACC---...TCATTTTCAAACATAACA
TRN  10010101110011001
NAM  Q961B0_DROME/783-808
ASQ  GDAPRSYCT.EDTTA-VLSKAP-.SNSDLS
DSQ  GGGGATGCTCCTCGCAGCTATTGCACA...GAGGACACTACTGCC---GTGCTTTCCAAAGCGCCA---...AGCAATAGTGATCTGTCC
TRN  11011101101011011
NAM  P91667_DROME/1140-1165
ASQ  EETIRSYCT.EDTPA-LLSKVP-.SNTNLS
DSQ  GAGGAGACCATTCGTAGCTACTGCACC...GAAGATACGCCAGCA---TTGCTCTCCAAAGTACCA---...AGTAACACTAACCTTTCG
TRN  11011101111011011
NAM  Q8WS39_9UROC/1038-1065
ASQ  MDQVKFFQMvEDTPNQGHSRTS-.SNTSLV
DSQ  ATGGACCAAGTCAAGTTTTTTCAAATGgtaGAAGATACACCAAACCAGGGCCATTCACGAACATCC---...AGTAATACAAGTCTTGTG
TRN  11011111111111101
NAM  P91667_DROME/836-861
ASQ  DDSVKCYQT.EDTPY-VISNAA-.SVTDLR
DSQ  GACGACAGTGTTAAGTGCTACCAGACG...GAGGATACCCCTTAT---GTTATATCCAATGCGGCT---...TCAGTCACAGATTTACGA
TRN  10010111110111000
NAM  Q961B0_DROME/644-669
ASQ  NTPQNIDSA.LETPL-MFSRRS-.SMDSLV
DSQ  AATACGCCTCAAAACATCGATTCCGCA...CTAGAAACTCCATTA---ATGTTTTCGCGTCGCAGC---...TCTATGGACTCATTGGTT
TRN  11011111111111100
NAM  P91667_DROME/964-989
ASQ  KPPTQANSA.LETPL-MFSRRS-.SMDSLV
DSQ  AAACCTCCCACCCAGGCAAACTCGGCA...TTGGAAACCCCGTTG---ATGTTCTCGCGACGCAGT---...TCCATGGACTCCCTAGTC
TRN  11011101111011011
NAM  Q8WS39_9UROC/569-595
ASQ  GARTPAYY-.QDTPL-MFSRHSPaSASSIE
DSQ  GGCGCAAGAACTCCGGCGTATTAT---...CAAGATACGCCTCTT---ATGTTTTCGAGGCATTCTCCAgctTCAGCAAGCTCGATCGAA
TRN  10010101110011001
NAM  APC_RAT/1366-1391
ASQ  PKSPPEHYV.QETPL-VFSRCT-.SVSSLD
DSQ  CCCAAAAGTCCCCCAGAACACTATGTC...CAGGAGACGCCCCTT---GTATTCAGCAGGTGTACT---...TCTGTCAGCTCCCTGGAC
TRN  10010101100011011
NAM  O95996_HUMAN/1144-1169
ASQ  PSSSSENYV.QETPL-VLSRCS-.SVSSLG
DSQ  CCGTCCAGCTCGTCGGAGAACTACGTG...CAGGAGACACCGCTT---GTGCTGAGCCGCTGCAGC---...TCTGTGAGCTCGCTGGGC
TRN  11011111101111111
NAM  O95996_HUMAN/1052-1077
ASQ  SKALQKLAA.QEGPL-SLSRCS-.SLSSLS
DSQ  AGCAAGGCACTGCAGAAACTGGCGGCG...CAAGAGGGGCCACTC---TCGCTGTCCCGATGCAGC---...TCCCTTTCCTCGCTGTCC
TRN  11011101101011011
NAM  O95996_HUMAN/1562-1587
ASQ  ARTQPSLIA.DETPP-CYSLSS-.SASSLS
DSQ  GCCCGGACCCAGCCCAGCCTCATTGCT...GACGAGACCCCGCCC---TGCTACTCCCTGAGCTCC---...TCCGCCAGCTCCCTCAGC
TRN  11011111101111111
NAM  Q8WS39_9UROC/506-534
ASQ  QDQPKVYNV.ENTPNHGTTSRSPkISRSPT
DSQ  CAGGACCAACCAAAAGTTTATAACGTT...GAAAACACGCCCAATCATGGAACCACAAGTCGATCGCCAaagATTAGCCGCTCGCCGACT
TRN  11111101111011011
//