EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF05894 - Podovirus_Gp16)
FAM  PF05894
PID  Podovirus_Gp16
DES  Podovirus DNA encapsidation protein (Gp16)
IPR  IPR008784
ANO  3
ALN  366
AID  0.356759
APH  (Q9FZV9_BPGA1/1-335:0.37440,VG16_BPPZA/1-331:0.34656,Q9FZR6_9CAUD/43-390:1.80653);
ATP  (Q9FZV9_BPGA1/1-335,VG16_BPPZA/1-331,Q9FZR6_9CAUD/43-390);
ATL  2.52749
DNO  3
DLN  1098
DID  0.468107
DPH  (Q9FZV9_BPGA1/1-335:0.26385,VG16_BPPZA/1-331:0.35812,Q9FZR6_9CAUD/43-390:1.01713);
DTP  (Q9FZV9_BPGA1/1-335,VG16_BPPZA/1-331,Q9FZR6_9CAUD/43-390);
DTL  1.6391
RID  0.356759
RPH  (Q9FZV9_BPGA1/1-335:0.37440,VG16_BPPZA/1-331:0.34656,Q9FZR6_9CAUD/43-390:1.80653);
RTP  (Q9FZV9_BPGA1/1-335,VG16_BPPZA/1-331,Q9FZR6_9CAUD/43-390);
RTL  2.52749
LNK  Q9FZR6_9CAUD/43-390:Q9FZR6:AF246223
LNK  Q9FZV9_BPGA1/1-335:Q9FZV9:X96987
LNK  VG16_BPPZA/1-331:P07541:M11813
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  Q9FZV9_BPGA1/1-335
ASQ  MDEKLFWKPQKLLSYSRILSCVI--GARGVGKSFAIKSKLVDDFLKNGRQFVYLRMYKTEISKNKSK-FFDDIAINYPNTKFEVKGNDFYING--KLAGYAIPLSGWQALKSSSYPNVYTIFFDEFVR--EKD----LTGYPPNVVDSLLNVMDTVFRHRVNDPAVRVICACNAVTLVNPYFLYFGFYPNPNQEFSKNDSIVVQIVKNEDY-ANARRDNRFGKLISGTAYEEMSIDNKFTQDSDL--FVQKRSKNSQFNFGIRYGGKNY-GVWVDREQMLMYLSEAYDPKSNQIFALTSDDLTEKNVLVGGWRGNY----------------KLTKLVSAFKKGMLRFENQVVRKHGYDILKQMRI
DSQ  ATGGATGAGAAACTATTTTGGAAACCTCAAAAACTATTATCGTATTCTCGCATTCTATCATGTGTTATT------GGTGCTCGTGGTGTTGGTAAGTCATTCGCTATTAAATCTAAATTAGTAGATGACTTCCTTAAAAACGGTAGACAGTTTGTTTATCTTAGAATGTATAAAACCGAAATATCTAAAAACAAATCAAAA---TTCTTTGACGATATTGCGATAAATTACCCTAACACAAAGTTTGAAGTAAAGGGCAATGACTTCTACATCAATGGG------AAGCTTGCGGGATATGCTATTCCTTTGAGTGGTTGGCAGGCTCTAAAATCTTCTTCTTATCCTAACGTGTATACTATTTTCTTTGATGAGTTTGTTCGT------GAAAAAGAC------------TTAACAGGATATCCGCCTAACGTGGTGGATTCCTTGTTAAACGTAATGGATACAGTTTTCAGACATAGAGTTAATGACCCAGCTGTTCGAGTTATATGTGCTTGTAACGCAGTAACACTTGTGAACCCTTACTTCCTTTACTTTGGATTCTATCCTAACCCTAACCAAGAGTTTTCAAAGAACGATTCTATAGTAGTTCAGATTGTTAAGAATGAAGATTAC---GCAAATGCTAGACGGGATAATAGATTCGGTAAGTTAATTTCAGGGACAGCTTACGAAGAAATGAGCATTGATAACAAGTTTACGCAAGACTCAGATTTG------TTTGTACAGAAAAGAAGTAAAAACTCTCAGTTTAATTTCGGTATTAGATATGGTGGTAAAAATTAC---GGTGTGTGGGTTGATAGAGAACAAATGTTAATGTATTTGTCAGAAGCTTATGACCCAAAAAGTAATCAAATTTTTGCTTTAACGTCTGATGACTTAACGGAGAAAAACGTCCTTGTTGGTGGTTGGAGAGGAAATTAC------------------------------------------------AAATTAACAAAGTTGGTCAGCGCATTCAAAAAAGGTATGTTAAGATTTGAAAATCAAGTTGTTAGAAAACATGGTTATGACATCTTAAAACAAATGAGAATA
TRN  10010101110011000
NAM  VG16_BPPZA/1-331
ASQ  MDKSLFYNPQKMLSYDRILNFVI--GARGIGKSYAMKVYPINRFIKYGEQFIYVRRYKPELAKV-SN-YFNDVAQEFPDHELVVKGRRFYIDG--KLAGWAIPLSVWQSEKSNAYPNVSTIVFDEFIR--EKD----NSNYIPNEVSALLNLMDTVFRNRER---VRCICLSNAVSVVNPYFLFFNLVPDVNKRFNVYDDALIEIPDSLDF-SSERRKTRFGRLIDGTEYGEMSLDNQFIGDSHV--FIEKRSKDSKFVFSIVYNGFTL-GVWVDVNQGLMYVDTAHDPSTKNVYTLTTDDLNENMMLITNYKNNY----------------HLRKLASAFMNGYLRFDNQVIRNIAYELFRKMRI
DSQ  ATGGACAAGAGTTTATTTTATAATCCACAGAAAATGTTATCATACGACCGCATACTAAACTTTGTTATT------GGTGCACGTGGTATCGGTAAATCATATGCAATGAAGGTGTATCCCATTAACCGCTTTATTAAATACGGGGAACAATTTATATATGTGCGGCGATACAAACCGGAGCTTGCTAAGGTG---TCAAAC---TATTTCAATGATGTGGCACAAGAATTCCCTGACCATGAGTTGGTTGTAAAGGGTAGAAGGTTCTACATTGACGGT------AAGCTCGCGGGGTGGGCTATTCCTCTGAGCGTGTGGCAAAGTGAGAAATCAAACGCATATCCTAATGTGAGTACAATCGTATTTGATGAGTTTATCAGG------GAAAAGGAT------------AATAGTAACTATATTCCTAATGAGGTTTCAGCATTATTAAACCTTATGGACACCGTTTTCCGTAACCGTGAACGT---------GTTCGGTGCATCTGTTTGAGTAATGCCGTATCTGTTGTTAACCCGTATTTTCTGTTCTTTAACCTTGTCCCTGACGTTAACAAACGCTTCAATGTTTATGACGACGCTTTGATTGAAATACCTGATAGTCTCGACTTC---TCATCTGAAAGGCGTAAAACAAGGTTTGGGCGGCTAATTGATGGAACTGAGTACGGTGAGATGAGTTTGGATAACCAGTTTATCGGTGATAGTCACGTG------TTTATAGAAAAGCGTAGTAAGGATAGTAAATTTGTATTCTCCATTGTATATAATGGTTTCACCCTT---GGTGTATGGGTTGATGTTAATCAAGGTCTTATGTACGTGGACACAGCACACGACCCATCAACTAAGAACGTATATACATTGACAACAGATGATCTTAATGAAAACATGATGTTAATAACTAACTATAAGAATAATTAT------------------------------------------------CATTTACGTAAGTTAGCTAGTGCGTTCATGAATGGTTATCTGAGGTTTGACAATCAAGTTATTCGTAATATTGCATATGAGTTGTTTCGCAAAATGCGTATA
TRN  10010101100011000
NAM  Q9FZR6_9CAUD/43-390
ASQ  MEKKQYFEISDIESLDPSMRFFIIKGKKNIGKTYALLER-MKDLAQKGEKFLFLRISDSEVKFL-ANEWTNDVNNP-----FYVKANKIYVKQTKEHIGLISHIKNLQKLRSLQYNDYSHIFFDEFVAFDEKSYGSSDSNASLTLVRNFIRLIMDVQRAKED---IKIFCFGNNDIAVDIFSKYFRL--SINEPYQVDNEAKITFINLRHYYQGVR-----SSYAKGLAFYDLVLDQYFSSNKTMED-ITKLAVYDSLHNGVIRYNILLNDNYYTLVELLHKTEDKLELTNSFVITNTSKPEDNKRPLIALTKKDYINDSNAVELIDLQKRVLIQQWSNLIKKHKLKFTDKVIEKNFINFLAFNYI
DSQ  ATGGAGAAAAAACAATATTTTGAAATTAGTGATATTGAATCTTTAGATCCAAGTATGCGTTTTTTCATTATTAAAGGAAAAAAGAATATTGGAAAAACTTATGCCCTTTTAGAAAGA---ATGAAAGACCTTGCTCAAAAAGGTGAAAAATTCCTTTTCCTTAGAATAAGTGACTCTGAAGTAAAGTTTCTA---GCTAATGAATGAACCAATGATGTTAACAACCCT---------------TTTTATGTAAAAGCTAATAAAATTTATGTAAAACAAACTAAAGAACATATTGGTTTGATATCTCACATTAAAAACCTCCAAAAACTGCGTTCTTTACAATATAACGACTATAGTCATATCTTTTTTGATGAGTTTGTAGCTTTTGATGAAAAATCATATGGTTCAAGCGATTCCAATGCTTCTTTGACTCTTGTAAGAAATTTTATTCGTTTAATAATGGATGTACAAAGGGCTAAAGAAGAT---------ATAAAGATTTTTTGTTTTGGTAATAATGACATTGCAGTAGATATCTTTAGTAAATACTTTAGATTA------AGCATTAATGAACCTTATCAAGTAGACAATGAGGCTAAAATAACTTTTATTAATCTAAGACATTACTATCAAGGAGTAAGA---------------TCAAGTTATGCCAAGGGCTTGGCTTTTTATGATTTAGTCTTAGATCAGTATTTTAGTTCTAATAAAACAATGGAAGAT---ATTACTAAATTAGCTGTTTATGATTCCTTACATAATGGAGTAATTAGATATAATATTTTACTAAATGATAATTATTATACTTTAGTGGAATTATTGCATAAAACAGAAGATAAACTTGAGTTGACAAATTCATTTGTAATAACTAATACAAGCAAACCCGAAGATAACAAAAGACCTTTAATTGCTTTAACTAAAAAGGACTATATTAATGATTCAAATGCTGTTGAATTAATTGATTTACAAAAAAGAGTATTAATTCAACAATGAAGCAATTTAATTAAAAAACATAAGCTTAAATTTACTGATAAAGTGATTGAAAAAAATTTTATAAATTTTTTAGCATTTAATTACATT
TRN  00010000000000000
//