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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF05240 - APOBEC_C)
FAM  PF05240
PID  APOBEC_C
DES  APOBEC-like C-terminal domain
IPR  IPR007904
ANO  16
ALN  70
AID  0.365224
APH  ((((((((Q8NHF9_MOUSE/119-181:0.67964,(ABC3A_HUMAN/133-195:0.10133,ABC3G_HUMAN/318-380:0.17009):0.29097):0.23128,ABEC2_MOUSE/159-224:0.79910):0.10161,(((ABC3D_HUMAN/324-386:0.14478,(ABC3C_HUMAN/128-184:0.10286,ABEC3_MOUSE/347-408:0.92295):0.06294):0.10535,ABEC3_MOUSE/136-198:0.62949):0.15300,(ABC3D_HUMAN/140-202:0.17160,ABC3B_HUMAN/128-190:0.05791):0.32172):0.05664):0.45605,ABC3G_HUMAN/128-194:0.08017):1.41596,ABEC1_MONDO/123-185:0.00000):0.26888,ABEC1_HUMAN/124-186:0.05044):0.10505,ABEC1_RABIT/124-186:0.25315):0.14135,ABEC1_RAT/124-186:0.11814,ABEC1_MESAU/124-186:0.09731);
ATP  ((((((((Q8NHF9_MOUSE/119-181,(ABC3A_HUMAN/133-195,ABC3G_HUMAN/318-380)),ABEC2_MOUSE/159-224),(((ABC3D_HUMAN/324-386,(ABC3C_HUMAN/128-184,ABEC3_MOUSE/347-408)),ABEC3_MOUSE/136-198),(ABC3D_HUMAN/140-202,ABC3B_HUMAN/128-190))),ABC3G_HUMAN/128-194),ABEC1_MONDO/123-185),ABEC1_HUMAN/124-186),ABEC1_RABIT/124-186),ABEC1_RAT/124-186,ABEC1_MESAU/124-186);
ATL  8.13625
DNO  14
DLN  210
DID  0.494442
DPH  ((ABEC1_HUMAN/124-186:0.05733,(ABEC1_MONDO/123-185:0.04428,(((ABEC3_MOUSE/347-408:0.58752,ABC3C_HUMAN/128-184:0.11519):0.09168,(ABC3G_HUMAN/128-194:0.23897,(ABEC3_MOUSE/136-198:0.32546,ABC3B_HUMAN/128-190:0.19044):0.00739):0.05215):0.13174,(Q8NHF9_MOUSE/119-181:0.46768,((ABC3A_HUMAN/133-195:0.04315,ABC3G_HUMAN/318-380:0.11735):0.19068,ABEC2_MOUSE/159-224:0.47286):0.05474):0.09503):0.87308):0.15962):0.06550,(ABEC1_MESAU/124-186:0.09293,ABEC1_RAT/124-186:0.08028):0.08208,ABEC1_RABIT/124-186:0.12984);
DTP  ((ABEC1_HUMAN/124-186,(ABEC1_MONDO/123-185,(((ABEC3_MOUSE/347-408,ABC3C_HUMAN/128-184),(ABC3G_HUMAN/128-194,(ABEC3_MOUSE/136-198,ABC3B_HUMAN/128-190))),(Q8NHF9_MOUSE/119-181,((ABC3A_HUMAN/133-195,ABC3G_HUMAN/318-380),ABEC2_MOUSE/159-224))))),(ABEC1_MESAU/124-186,ABEC1_RAT/124-186),ABEC1_RABIT/124-186);
DTL  4.76698
RID  0.35966
RPH  ((ABEC1_MONDO/123-185:0.00000,(ABC3G_HUMAN/128-194:0.11099,(ABC3B_HUMAN/128-190:0.28937,((ABEC3_MOUSE/136-198:0.57465,(ABEC3_MOUSE/347-408:0.87463,ABC3C_HUMAN/128-184:0.17269):0.17959):0.10203,((Q8NHF9_MOUSE/119-181:0.67758,(ABC3A_HUMAN/133-195:0.11708,ABC3G_HUMAN/318-380:0.15618):0.27548):0.22613,ABEC2_MOUSE/159-224:0.82715):0.04774):0.16352):0.47978):1.37859):0.26890,((ABEC1_RAT/124-186:0.11881,ABEC1_MESAU/124-186:0.09744):0.14210,ABEC1_RABIT/124-186:0.25274):0.10537,ABEC1_HUMAN/124-186:0.05079);
RTP  ((ABEC1_MONDO/123-185,(ABC3G_HUMAN/128-194,(ABC3B_HUMAN/128-190,((ABEC3_MOUSE/136-198,(ABEC3_MOUSE/347-408,ABC3C_HUMAN/128-184)),((Q8NHF9_MOUSE/119-181,(ABC3A_HUMAN/133-195,ABC3G_HUMAN/318-380)),ABEC2_MOUSE/159-224))))),((ABEC1_RAT/124-186,ABEC1_MESAU/124-186),ABEC1_RABIT/124-186),ABEC1_HUMAN/124-186);
RTL  7.68933
LNK  ABC3A_HUMAN/133-195:P31941:U03891
LNK  ABC3B_HUMAN/128-190:Q9UH17:AL022318
LNK  ABC3C_HUMAN/128-184:Q9NRW3:BC011739
LNK  ABC3D_HUMAN/140-202:Q96AK3:
LNK  ABC3D_HUMAN/324-386:Q96AK3:
LNK  ABC3G_HUMAN/128-194:Q9HC16:AF182420
LNK  ABC3G_HUMAN/318-380:Q9HC16:AF182420
LNK  ABEC1_HUMAN/124-186:P41238:L25877
LNK  ABEC1_MESAU/124-186:Q9EQP0:AF176577
LNK  ABEC1_MONDO/123-185:Q9TUI7:AB027195
LNK  ABEC1_RABIT/124-186:P47855:U10695
LNK  ABEC1_RAT/124-186:P38483:L07114
LNK  ABEC2_MOUSE/159-224:Q9WV35:AF161699
LNK  ABEC3_MOUSE/136-198:Q99J72:AK049998
LNK  ABEC3_MOUSE/347-408:Q99J72:AK044394
LNK  Q8NHF9_MOUSE/119-181:Q8NHF9:AF529838
AMK  xxxxxxxxxxxxxx..x..xxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  ABEC2_MOUSE/159-224
ASQ  EPEVQAALKKLKEA..G..CKLRIMKPQDFEYIWQNFVEQEEgEsKAFEPWEDIQENFLYYEEKLADILK
DSQ  GAGCCAGAGGTCCAGGCCGCTCTGAAAAAGCTGAAGGAGGCC......GGC......TGCAAACTTCGCATCATGAAACCCCAGGACTTCGAGTACATCTGGCAGAATTTTGTGGAGCAAGAAGAGggtGAAtccAAGGCCTTTGAGCCCTGGGAGGACATTCAGGAGAACTTCCTATACTATGAGGAGAAGTTGGCAGACATCCTGAAG
TRN  11011101101011011
NAM  ABC3B_HUMAN/128-190
ASQ  ERDYRRALCRLSQA..G..ARVTIMDYEEFAYCWENFVYNEG.-.QQFMPWYKFDENYAFLHRTLKEILR
DSQ  GAAAGAGATTACCGAAGGGCGCTCTGCAGGCTGAGTCAGGCA......GGA......GCCCGCGTGACGATCATGGACTATGAAGAATTTGCATACTGCTGGGAAAACTTTGTGTACAATGAAGGT...---...CAGCAATTCATGCCTTGGTACAAATTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGAGATTCTCAGA
TRN  10010101100011011
NAM  ABC3D_HUMAN/140-202
ASQ  DRDWRWVLLRLHKA..G..ARVKIMDYEDFAYCWENFVCNEG.-.QPFMPWYKFDDNYASLHRTLKEILR
NAM  ABC3D_HUMAN/324-386
ASQ  DTDYQEGLCSLSQE..G..ASVKIMGYKDFVSCWKNFVYSDD.-.EPFKPWKGLQTNFRLLKRRLREILQ
NAM  ABC3C_HUMAN/128-184
ASQ  YPCYQEGLRSLSQE..G..VAVEIMDYEDFKYCWENFVYNDN.-.EPFKPWKGLKTNFRLLKRR------
DSQ  TATCCATGTTACCAGGAGGGGCTCCGCAGCCTGAGTCAGGAA......GGG......GTCGCTGTGGAGATCATGGACTATGAAGATTTTAAATATTGTTGGGAAAACTTTGTGTACAATGATAAT...---...GAGCCATTCAAGCCTTGGAAGGGATTAAAAACCAACTTTCGACTTCTGAAAAGAAGG------------------
TRN  10010101100011010
NAM  ABC3G_HUMAN/128-194
ASQ  DPDYQEALRSLCQKrdGprATMKIMNYDEFQHCWSKFVYSQR.-.ELFEPWNNLPKYYILLHIMLGEILR
DSQ  GACCCAGATTACCAGGAGGCGCTTCGCAGCCTGTGTCAGAAAagagacGGTccgcgtGCCACCATGAAGATCATGAATTATGACGAATTTCAGCACTGTTGGAGCAAGTTCGTGTACAGCCAAAGA...---...GAGCTATTTGAGCCTTGGAATAATCTGCCTAAATATTATATATTACTGCACATCATGCTGGGGGAGATTCTCAGA
TRN  10010101100011010
NAM  ABEC3_MOUSE/136-198
ASQ  DPETQQNLCRLVQE..G..AQVAAMDLYEFKKCWKKFVDNGG.-.RRFRPWKRLLTNFRYQDSKLQEILR
DSQ  GACCCAGAAACCCAGCAGAATCTTTGCAGGCTGGTTCAGGAA......GGA......GCCCAGGTGGCTGCCATGGACCTATACGAATTTAAAAAGTGTTGGAAGAAGTTTGTGGACAATGGTGGC...---...AGGCGATTCAGGCCTTGGAAAAGACTGCTTACAAATTTTAGATACCAGGATTCTAAGCTTCAGGAGATTCTGAGG
TRN  10010101100011011
NAM  ABC3G_HUMAN/318-380
ASQ  QGRCQEGLRTLAEA..G..AKISIMTYSEFKHCWDTFVDHQG.-.CPFQPWDGLDEHSQDLSGRLRAILQ
DSQ  CAAGGAAGATGTCAGGAGGGGCTGCGCACCCTGGCCGAGGCT......GGG......GCCAAAATTTCAATAATGACATACAGTGAATTTAAGCACTGCTGGGACACCTTTGTGGACCACCAGGGA...---...TGTCCCTTCCAGCCCTGGGATGGACTAGATGAGCACAGCCAAGACCTGAGTGGGAGGCTGCGGGCCATTCTCCAG
TRN  10010101100011001
NAM  ABC3A_HUMAN/133-195
ASQ  DPLYKEALQMLRDA..G..AQVSIMTYDEFKHCWDTFVDHQG.-.CPFQPWDGLDEHSQALSGRLRAILQ
DSQ  GACCCCCTATATAAGGAGGCGCTGCAAATGCTGCGGGATGCT......GGG......GCCCAAGTCTCCATCATGACCTACGATGAATTTAAGCACTGCTGGGACACCTTTGTGGACCACCAGGGA...---...TGTCCCTTCCAGCCCTGGGATGGACTAGATGAGCACAGCCAAGCCCTGAGTGGGAGGCTGCGGGCCATTCTCCAG
TRN  10010101100011011
NAM  Q8NHF9_MOUSE/119-181
ASQ  RKAEPEGLRRLHRA..G..VQIVIMTFKDYFYCWNTFVENHE.-.RTFKAWEGLHENSVRLSRQLRRILL
DSQ  CGCAAGGCTGAGCCCGAGGGGCTGCGGCGGCTGCACCGCGCC......GGG......GTACAAATAGTCATCATGACCTTCAAAGATTATTTTTACTGCTGGAATACTTTTGTAGAAAACCATGAA...---...AGAACTTTCAAAGCCTGGGAAGGGCTGCATGAAAATTCAGTTCGTCTCTCCAGACAGCTTCGGCGCATCCTTTTG
TRN  10010101100011001
NAM  ABEC3_MOUSE/347-408
ASQ  KRPFQKGLCSLWQS..G..ILVDVMDLPQFTDCWTNFVNPKR.-.-PFWPWKGLEIISRRTQRRLRRIKE
DSQ  AAGAGGCCCTTCCAGAAGGGGCTGTGTTCTCTGTGGCAATCA......GGG......ATCCTGGTGGACGTCATGGACCTCCCACAGTTTACTGACTGCTGGACAAACTTTGTGAACCCGAAAAGG...---...---CCGTTTTGGCCATGGAAAGGATTGGAGATAATCAGCAGGCGCACACAAAGGCGGCTCCACAGGATCAAGGAG
TRN  10010101100011001
NAM  ABEC1_MONDO/123-185
ASQ  DQQHRQGLKELVHS..G..VTIQIMSYSEYHYCWRNFVDYPQ.-.GEEDYWPKYPYLWIMLYVLELHCII
DSQ  GATCAACAGCATCGTCAAGGACTCAAGGAACTTGTCCACTCT......GGA......GTGACTATCCAGATTATGAGCTACTCAGAGTATCATTACTGTTGGAGAAATTTTGTTGACTATCCACAA...---...GGGGAAGAAGATTACTGGCCCAAATACCCCTACCTTTGGATTATGTTATATGTCCTGGAACTCCACTGCATAATT
TRN  10010101100011000
NAM  ABEC1_HUMAN/124-186
ASQ  DQQNRQGLRDLVNS..G..VTIQIMRASEYYHCWRNFVNYPP.-.GDEAHWPQYPPLWMMLYALELHCII
DSQ  GATCAACAAAATCGGCAAGGTCTCAGGGACCTTGTTAACAGT......GGA......GTAACTATTCAGATTATGAGAGCATCAGAGTATTATCACTGCTGGAGGAATTTTGTCAACTACCCACCT...---...GGGGATGAAGCTCACTGGCCACAATACCCACCTCTGTGGATGATGTTGTACGCACTGGAGCTGCACTGCATAATT
TRN  10010101100011001
NAM  ABEC1_MESAU/124-186
ASQ  DQRNRQGLRDLISR..G..VTIRIMTEQEYCYCWRNFVNYPP.-.SNEVYWPRYPNLWMRLYALELYCIH
DSQ  GATCAGCGAAACCGGCAAGGACTCAGGGACCTCATCAGCAGA......GGT......GTGACCATCCGGATCATGACTGAGCAAGAGTACTGTTACTGCTGGAGGAATTTTGTCAACTACCCACCT...---...TCAAATGAAGTTTACTGGCCAAGGTACCCAAATCTGTGGATGAGGCTGTATGCGCTGGAACTGTACTGCATCCAT
TRN  10010101100011001
NAM  ABEC1_RAT/124-186
ASQ  DPRNRQGLRDLISS..G..VTIQIMTEQESGYCWRNFVNYSP.-.SNEAHWPRYPHLWVRLYVLELYCII
DSQ  GATCCTCGAAATCGGCAAGGACTCAGGGACCTTATTAGCAGC......GGT......GTTACTATCCAGATCATGACGGAGCAAGAGTCTGGCTACTGCTGGAGGAATTTTGTCAACTACTCCCCT...---...TCGAATGAAGCTCATTGGCCAAGGTACCCCCATCTGTGGGTGAGGCTGTACGTACTGGAACTCTACTGCATCATT
TRN  10010101100011011
NAM  ABEC1_RABIT/124-186
ASQ  DRRNRQGLKDLVTS..G..VTVRVMSVSEYCYCWENFVNYPP.-.GKAAQWPRYPPRWMLMYALELYCII
DSQ  GATCGCCGGAACCGGCAAGGGCTCAAGGACCTCGTTACCAGC......GGC......GTAACTGTCCGGGTTATGAGCGTCTCAGAGTATTGTTACTGCTGGGAGAATTTTGTCAACTACCCGCCG...---...GGGAAAGCAGCTCAATGGCCAAGGTACCCACCTCGGTGGATGCTGATGTATGCACTGGAACTCTACTGCATCATT
TRN  10010101100011001
//