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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF05001 - RNA_pol_Rpb1_R)
FAM  PF05001
PID  RNA_pol_Rpb1_R
DES  RNA polymerase Rpb1 C-terminal repeat
IPR  IPR000684
ANO  99
ALN  30
AID  0.496225
APH  (((((((((((((((O08847_MOUSE/1749-1762:0.00000,Q9HGZ5_ASPOR/1691-1704:0.23644):0.14592,((((Q9XZS1_DROGU/1842-1855:0.21760,O08847_MOUSE/1875-1888:0.14239):0.00000,((Q9AXN1_9FLOR/1653-1667:0.32108,O08847_MOUSE/1948-1961:0.21652):0.04836,Q9HGZ5_ASPOR/1705-1719:0.00000):0.07106):0.09517,((O77375_PLAF7/2345-2358:0.17830,O08847_MOUSE/1903-1916:0.07628):0.00000,O77375_PLAF7/2289-2302:0.17058):0.14448):0.00000,Q9XZS1_DROGU/1856-1869:0.24748):0.06158):0.00000,(((Q9XZS1_DROGU/1620-1633:0.60075,RPB1_ARATH/1721-1734:0.09150):0.44425,Q9FI54_ARATH/121-134:0.34077):0.03569,(((((((RPB1_CAEEL/1498-1512:0.35727,Q99367_SOYBN/440-453:0.04908):0.51416,(Q9BMP3_MONBE/1556-1570:0.00000,O09451_9FLOR/1525-1538:1.22578):0.17361):0.14223,((Q9FI54_ARATH/149-162:0.43446,(Q99368_SOYBN/934-947:0.02701,RPB1_ARATH/1789-1801:0.45953):0.36775):0.29708,Q9XZS1_DROGU/1730-1742:0.00000):0.07005):0.08132,(((O09451_9FLOR/1625-1638:0.53677,Q9AXN0_9EUKA/1670-1686:0.35258):0.00000,Q9XZS1_DROGU/1590-1605:0.00000):0.11992,Q9XZS1_DROGU/1674-1687:0.29080):0.00000):0.11631,(RPB1_CAEEL/1759-1772:0.46184,Q99368_SOYBN/920-933:0.01104):0.35563):0.00000,(Q9XZS1_DROGU/1871-1884:0.10173,(O77375_PLAF7/2377-2390:0.18609,((((((Q9XZS1_DROGU/1550-1563:0.40797,(O08847_MOUSE/1555-1569:0.62906,(Q9BMP3_MONBE/1527-1540:0.06422,Q9HGZ5_ASPOR/1601-1614:0.28569):0.00000):0.10992):0.02635,(Q99368_SOYBN/954-967:0.13958,RPB1_ARATH/1802-1815:0.12886):0.36297):0.08224,Q9HGZ5_ASPOR/1735-1748:0.08764):0.11344,Q9AXN0_9EUKA/1656-1669:0.13895):0.01431,O09451_9FLOR/1658-1672:0.11398):0.02767,(O77375_PLAF7/2168-2181:0.71006,Q9HGZ5_ASPOR/1558-1572:0.10849):0.19550):0.10694):0.00000):0.15076):0.00000,O00820_ACACA/1539-1552:0.00000):0.00000):0.07484):0.00000,((((Q9HGZ5_ASPOR/1722-1734:0.00000,((O04142_PORYE/1595-1608:0.27940,Q9AXN0_9EUKA/1586-1599:0.57377):0.35232,RPB1_YEAST/1529-1542:0.13068):0.36719):0.00000,(O94231_KLULA/212-229:0.19643,RPB1_SCHPO/1545-1558:0.29409):0.08391):0.03502,((O04142_PORYE/1550-1563:0.16600,Q9HGZ5_ASPOR/1587-1600:0.16676):0.03190,Q9XZS1_DROGU/1606-1619:0.24432):0.31910):0.14159,Q9BMP3_MONBE/1513-1526:0.08113):0.07763):0.08041,Q9FI54_ARATH/135-148:0.64011):0.08202,((O77375_PLAF7/2243-2256:0.12285,Q25655_PLABE/79-92:0.31127):0.29964,(O08847_MOUSE/1587-1600:0.04813,Q9AXN0_9EUKA/1545-1556:0.25072):0.00191):0.21046):0.00000,O00820_ACACA/1525-1538:0.00000):0.06978,((RPB1_CAEEL/1549-1567:0.28905,RPB1_YEAST/1711-1724:0.81538):0.08970,(((Q9XZS1_DROGU/1743-1756:0.00000,Q9C428_9FUNG/1503-1516:1.19191):0.25058,(((((Q9XZS1_DROGU/1801-1813:0.35787,((Q9XZS1_DROGU/1773-1786:0.28391,O08847_MOUSE/1847-1860:0.10204):0.00000,O08847_MOUSE/1805-1818:0.28022):0.15943):0.00000,((Q99368_SOYBN/892-905:0.17161,RPB1_CAEEL/1576-1589:0.16621):0.00000,(Q9C428_9FUNG/1434-1447:0.66606,Q99367_SOYBN/454-466:0.08029):0.12139):0.15116):0.00000,Q25655_PLABE/108-124:0.15720):0.08154,(O77375_PLAF7/2257-2270:0.49903,(O77375_PLAF7/2363-2376:0.42519,Q9XZS1_DROGU/1828-1841:0.49466):0.00000):0.25266):0.00000,O00820_ACACA/1511-1524:0.00000):0.07034):0.08181,(((O09451_9FLOR/1677-1690:0.20117,O77165_9EUKA/1500-1513:0.06982):0.08291,(((O77375_PLAF7/2393-2406:0.94638,Q9BMP3_MONBE/1712-1726:0.23420):0.02116,Q9XZS1_DROGU/1814-1827:0.34821):0.27613,Q9XZS1_DROGU/1634-1647:0.12752):0.06369):0.14781,(((Q99368_SOYBN/879-891:0.25358,RPB1_DROME/1625-1638:0.25350):0.25787,O04142_PORYE/1631-1644:0.09726):0.09612,O00820_ACACA/1483-1496:0.26732):0.00000):0.08144):0.00000):0.00000):0.04243,O77165_9EUKA/1654-1667:0.15288):0.02818,(((O04142_PORYE/1579-1592:0.26553,O09451_9FLOR/1574-1587:0.00000):0.11702,Q9AXN1_9FLOR/1572-1585:0.11182):0.08331,Q9BMP3_MONBE/1498-1511:0.70846):0.07603):0.00000,(((O96446_9MICR/1461-1474:0.23764,Q9AXN1_9FLOR/1625-1638:0.56815):0.13799,O96452_ANTLO/1432-1446:0.14134):0.08564,Q9HGZ5_ASPOR/1615-1628:0.00000):0.07174):0.49467,Q9H5H4_HUMAN/74-87:0.74946):0.52567,Q9H5H4_HUMAN/109-122:0.00000):0.37702,Q9H5H4_HUMAN/95-108:0.09332):0.19383,Q9H5H4_HUMAN/39-52:0.20504,Q9H5H4_HUMAN/53-66:0.09063);
ATP  (((((((((((((((O08847_MOUSE/1749-1762,Q9HGZ5_ASPOR/1691-1704),((((Q9XZS1_DROGU/1842-1855,O08847_MOUSE/1875-1888),((Q9AXN1_9FLOR/1653-1667,O08847_MOUSE/1948-1961),Q9HGZ5_ASPOR/1705-1719)),((O77375_PLAF7/2345-2358,O08847_MOUSE/1903-1916),O77375_PLAF7/2289-2302)),Q9XZS1_DROGU/1856-1869)),(((Q9XZS1_DROGU/1620-1633,RPB1_ARATH/1721-1734),Q9FI54_ARATH/121-134),(((((((RPB1_CAEEL/1498-1512,Q99367_SOYBN/440-453),(Q9BMP3_MONBE/1556-1570,O09451_9FLOR/1525-1538)),((Q9FI54_ARATH/149-162,(Q99368_SOYBN/934-947,RPB1_ARATH/1789-1801)),Q9XZS1_DROGU/1730-1742)),(((O09451_9FLOR/1625-1638,Q9AXN0_9EUKA/1670-1686),Q9XZS1_DROGU/1590-1605),Q9XZS1_DROGU/1674-1687)),(RPB1_CAEEL/1759-1772,Q99368_SOYBN/920-933)),(Q9XZS1_DROGU/1871-1884,(O77375_PLAF7/2377-2390,((((((Q9XZS1_DROGU/1550-1563,(O08847_MOUSE/1555-1569,(Q9BMP3_MONBE/1527-1540,Q9HGZ5_ASPOR/1601-1614))),(Q99368_SOYBN/954-967,RPB1_ARATH/1802-1815)),Q9HGZ5_ASPOR/1735-1748),Q9AXN0_9EUKA/1656-1669),O09451_9FLOR/1658-1672),(O77375_PLAF7/2168-2181,Q9HGZ5_ASPOR/1558-1572))))),O00820_ACACA/1539-1552))),((((Q9HGZ5_ASPOR/1722-1734,((O04142_PORYE/1595-1608,Q9AXN0_9EUKA/1586-1599),RPB1_YEAST/1529-1542)),(O94231_KLULA/212-229,RPB1_SCHPO/1545-1558)),((O04142_PORYE/1550-1563,Q9HGZ5_ASPOR/1587-1600),Q9XZS1_DROGU/1606-1619)),Q9BMP3_MONBE/1513-1526)),Q9FI54_ARATH/135-148),((O77375_PLAF7/2243-2256,Q25655_PLABE/79-92),(O08847_MOUSE/1587-1600,Q9AXN0_9EUKA/1545-1556))),O00820_ACACA/1525-1538),((RPB1_CAEEL/1549-1567,RPB1_YEAST/1711-1724),(((Q9XZS1_DROGU/1743-1756,Q9C428_9FUNG/1503-1516),(((((Q9XZS1_DROGU/1801-1813,((Q9XZS1_DROGU/1773-1786,O08847_MOUSE/1847-1860),O08847_MOUSE/1805-1818)),((Q99368_SOYBN/892-905,RPB1_CAEEL/1576-1589),(Q9C428_9FUNG/1434-1447,Q99367_SOYBN/454-466))),Q25655_PLABE/108-124),(O77375_PLAF7/2257-2270,(O77375_PLAF7/2363-2376,Q9XZS1_DROGU/1828-1841))),O00820_ACACA/1511-1524)),(((O09451_9FLOR/1677-1690,O77165_9EUKA/1500-1513),(((O77375_PLAF7/2393-2406,Q9BMP3_MONBE/1712-1726),Q9XZS1_DROGU/1814-1827),Q9XZS1_DROGU/1634-1647)),(((Q99368_SOYBN/879-891,RPB1_DROME/1625-1638),O04142_PORYE/1631-1644),O00820_ACACA/1483-1496))))),O77165_9EUKA/1654-1667),(((O04142_PORYE/1579-1592,O09451_9FLOR/1574-1587),Q9AXN1_9FLOR/1572-1585),Q9BMP3_MONBE/1498-1511)),(((O96446_9MICR/1461-1474,Q9AXN1_9FLOR/1625-1638),O96452_ANTLO/1432-1446),Q9HGZ5_ASPOR/1615-1628)),Q9H5H4_HUMAN/74-87),Q9H5H4_HUMAN/109-122),Q9H5H4_HUMAN/95-108),Q9H5H4_HUMAN/39-52,Q9H5H4_HUMAN/53-66);
ATL  38.6421
DNO  99
DLN  90
DID  0.449554
DPH  ((((((((((RPB1_YEAST/1711-1724:0.40904,((((Q9XZS1_DROGU/1620-1633:0.37579,Q99367_SOYBN/454-466:0.13646):0.36267,O77165_9EUKA/1654-1667:0.30923):0.01284,(((((((Q9FI54_ARATH/149-162:0.33357,Q9FI54_ARATH/135-148:0.10302):0.10590,Q9FI54_ARATH/121-134:0.08709):0.19430,RPB1_ARATH/1721-1734:0.17886):0.14823,O08847_MOUSE/1847-1860:0.28272):0.12270,Q9HGZ5_ASPOR/1735-1748:0.29346):0.01574,(O04142_PORYE/1579-1592:0.41063,Q9AXN1_9FLOR/1653-1667:0.16656):0.07503):0.12001,(RPB1_CAEEL/1759-1772:0.31362,O09451_9FLOR/1658-1672:0.25203):0.07661):0.02666):0.09852,((O96452_ANTLO/1432-1446:0.00000,(Q9BMP3_MONBE/1498-1511:0.41794,O08847_MOUSE/1555-1569:0.50674):0.31449):0.27826,O77375_PLAF7/2393-2406:0.53925):0.10867):0.03345):0.12774,(((Q99368_SOYBN/879-891:0.52114,RPB1_DROME/1625-1638:0.23744):0.11901,(((Q25655_PLABE/108-124:0.27238,O77375_PLAF7/2363-2376:0.14860):0.06939,O77375_PLAF7/2257-2270:0.15533):0.08789,(O77375_PLAF7/2243-2256:0.23534,Q25655_PLABE/79-92:0.18341):0.08287):0.09482):0.06934,((((Q99368_SOYBN/954-967:0.29080,RPB1_ARATH/1802-1815:0.00000):0.26997,(Q9HGZ5_ASPOR/1722-1734:0.08493,RPB1_YEAST/1529-1542:0.32004):0.10298):0.00189,((((Q9C428_9FUNG/1434-1447:0.40983,Q9BMP3_MONBE/1527-1540:0.25714):0.18521,Q9HGZ5_ASPOR/1691-1704:0.08657):0.08750,(((O77375_PLAF7/2168-2181:0.53507,O00820_ACACA/1539-1552:0.27244):0.00867,Q9XZS1_DROGU/1856-1869:0.05926):0.16118,(((Q9XZS1_DROGU/1801-1813:0.17693,Q9XZS1_DROGU/1674-1687:0.29235):0.14541,Q9XZS1_DROGU/1773-1786:0.27435):0.06078,((Q9XZS1_DROGU/1842-1855:0.16439,((Q9XZS1_DROGU/1743-1756:0.23297,O00820_ACACA/1511-1524:0.10781):0.16240,Q9XZS1_DROGU/1590-1605:0.16095):0.12073):0.09007,Q9XZS1_DROGU/1730-1742:0.13897):0.07026):0.00000):0.15235):0.15700,(O77375_PLAF7/2289-2302:0.17827,O77375_PLAF7/2345-2358:0.15337):0.01451):0.09576):0.05811,(((Q9HGZ5_ASPOR/1615-1628:0.13138,(((Q9AXN0_9EUKA/1545-1556:0.36009,O04142_PORYE/1595-1608:0.44486):0.06186,O04142_PORYE/1631-1644:0.07476):0.16295,(((Q9HGZ5_ASPOR/1601-1614:0.23659,(O04142_PORYE/1550-1563:0.21797,Q9HGZ5_ASPOR/1587-1600:0.23503):0.21416):0.05801,(((O96446_9MICR/1461-1474:0.37275,Q9AXN1_9FLOR/1625-1638:0.32155):0.22903,O09451_9FLOR/1625-1638:0.20140):0.23264,(Q9BMP3_MONBE/1712-1726:0.51508,O08847_MOUSE/1903-1916:0.07744):0.18900):0.07489):0.17545,((RPB1_CAEEL/1498-1512:0.34142,Q9XZS1_DROGU/1606-1619:0.23353):0.12253,RPB1_CAEEL/1549-1567:0.20930):0.10303):0.04667):0.09328):0.00000,((O09451_9FLOR/1677-1690:0.22087,O77165_9EUKA/1500-1513:0.24315):0.14004,((Q9XZS1_DROGU/1550-1563:0.32474,Q9XZS1_DROGU/1634-1647:0.24032):0.02454,O00820_ACACA/1525-1538:0.25597):0.04088):0.17343):0.10355,(RPB1_CAEEL/1576-1589:0.37690,O77375_PLAF7/2377-2390:0.17735):0.07545):0.10633):0.10144):0.00000):0.00000,(O08847_MOUSE/1587-1600:0.22982,O00820_ACACA/1483-1496:0.24040):0.09207):0.05754,((O09451_9FLOR/1574-1587:0.11713,Q9AXN1_9FLOR/1572-1585:0.33706):0.21353,((RPB1_SCHPO/1545-1558:0.15310,((Q99368_SOYBN/934-947:0.17448,RPB1_ARATH/1789-1801:0.32469):0.12152,(O94231_KLULA/212-229:0.18972,(O08847_MOUSE/1948-1961:0.32336,Q9BMP3_MONBE/1513-1526:0.06584):0.34642):0.04767):0.16363):0.10783,(((Q99368_SOYBN/892-905:0.09471,(Q9HGZ5_ASPOR/1705-1719:0.10746,(O08847_MOUSE/1875-1888:0.15490,((Q9HGZ5_ASPOR/1558-1572:0.45164,Q99368_SOYBN/920-933:0.11690):0.06527,(Q9AXN0_9EUKA/1670-1686:0.28934,(Q9XZS1_DROGU/1828-1841:0.39383,Q9XZS1_DROGU/1871-1884:0.23041):0.02992):0.10047):0.12467):0.02456):0.19065):0.11630,O08847_MOUSE/1805-1818:0.33398):0.06246,O08847_MOUSE/1749-1762:0.22224):0.08846):0.04978):0.07601):0.20447,((Q9XZS1_DROGU/1814-1827:0.33313,Q99367_SOYBN/440-453:0.40756):0.00000,(O09451_9FLOR/1525-1538:0.34888,(Q9AXN0_9EUKA/1586-1599:0.00000,Q9BMP3_MONBE/1556-1570:0.72158):0.21639):0.26907):0.05413):0.00000,(Q9AXN0_9EUKA/1656-1669:0.13044,Q9C428_9FUNG/1503-1516:0.54075):0.27618):0.22143,Q9H5H4_HUMAN/74-87:0.24517):0.13195,Q9H5H4_HUMAN/109-122:0.10370):0.03352,Q9H5H4_HUMAN/95-108:0.04677):0.15798,Q9H5H4_HUMAN/39-52:0.04443,Q9H5H4_HUMAN/53-66:0.17568);
DTP  ((((((((((RPB1_YEAST/1711-1724,((((Q9XZS1_DROGU/1620-1633,Q99367_SOYBN/454-466),O77165_9EUKA/1654-1667),(((((((Q9FI54_ARATH/149-162,Q9FI54_ARATH/135-148),Q9FI54_ARATH/121-134),RPB1_ARATH/1721-1734),O08847_MOUSE/1847-1860),Q9HGZ5_ASPOR/1735-1748),(O04142_PORYE/1579-1592,Q9AXN1_9FLOR/1653-1667)),(RPB1_CAEEL/1759-1772,O09451_9FLOR/1658-1672))),((O96452_ANTLO/1432-1446,(Q9BMP3_MONBE/1498-1511,O08847_MOUSE/1555-1569)),O77375_PLAF7/2393-2406))),(((Q99368_SOYBN/879-891,RPB1_DROME/1625-1638),(((Q25655_PLABE/108-124,O77375_PLAF7/2363-2376),O77375_PLAF7/2257-2270),(O77375_PLAF7/2243-2256,Q25655_PLABE/79-92))),((((Q99368_SOYBN/954-967,RPB1_ARATH/1802-1815),(Q9HGZ5_ASPOR/1722-1734,RPB1_YEAST/1529-1542)),((((Q9C428_9FUNG/1434-1447,Q9BMP3_MONBE/1527-1540),Q9HGZ5_ASPOR/1691-1704),(((O77375_PLAF7/2168-2181,O00820_ACACA/1539-1552),Q9XZS1_DROGU/1856-1869),(((Q9XZS1_DROGU/1801-1813,Q9XZS1_DROGU/1674-1687),Q9XZS1_DROGU/1773-1786),((Q9XZS1_DROGU/1842-1855,((Q9XZS1_DROGU/1743-1756,O00820_ACACA/1511-1524),Q9XZS1_DROGU/1590-1605)),Q9XZS1_DROGU/1730-1742)))),(O77375_PLAF7/2289-2302,O77375_PLAF7/2345-2358))),(((Q9HGZ5_ASPOR/1615-1628,(((Q9AXN0_9EUKA/1545-1556,O04142_PORYE/1595-1608),O04142_PORYE/1631-1644),(((Q9HGZ5_ASPOR/1601-1614,(O04142_PORYE/1550-1563,Q9HGZ5_ASPOR/1587-1600)),(((O96446_9MICR/1461-1474,Q9AXN1_9FLOR/1625-1638),O09451_9FLOR/1625-1638),(Q9BMP3_MONBE/1712-1726,O08847_MOUSE/1903-1916))),((RPB1_CAEEL/1498-1512,Q9XZS1_DROGU/1606-1619),RPB1_CAEEL/1549-1567)))),((O09451_9FLOR/1677-1690,O77165_9EUKA/1500-1513),((Q9XZS1_DROGU/1550-1563,Q9XZS1_DROGU/1634-1647),O00820_ACACA/1525-1538))),(RPB1_CAEEL/1576-1589,O77375_PLAF7/2377-2390))))),(O08847_MOUSE/1587-1600,O00820_ACACA/1483-1496)),((O09451_9FLOR/1574-1587,Q9AXN1_9FLOR/1572-1585),((RPB1_SCHPO/1545-1558,((Q99368_SOYBN/934-947,RPB1_ARATH/1789-1801),(O94231_KLULA/212-229,(O08847_MOUSE/1948-1961,Q9BMP3_MONBE/1513-1526)))),(((Q99368_SOYBN/892-905,(Q9HGZ5_ASPOR/1705-1719,(O08847_MOUSE/1875-1888,((Q9HGZ5_ASPOR/1558-1572,Q99368_SOYBN/920-933),(Q9AXN0_9EUKA/1670-1686,(Q9XZS1_DROGU/1828-1841,Q9XZS1_DROGU/1871-1884)))))),O08847_MOUSE/1805-1818),O08847_MOUSE/1749-1762)))),((Q9XZS1_DROGU/1814-1827,Q99367_SOYBN/440-453),(O09451_9FLOR/1525-1538,(Q9AXN0_9EUKA/1586-1599,Q9BMP3_MONBE/1556-1570)))),(Q9AXN0_9EUKA/1656-1669,Q9C428_9FUNG/1503-1516)),Q9H5H4_HUMAN/74-87),Q9H5H4_HUMAN/109-122),Q9H5H4_HUMAN/95-108),Q9H5H4_HUMAN/39-52,Q9H5H4_HUMAN/53-66);
DTL  36.5158
RID  0.496225
RPH  (((((((((((((((O08847_MOUSE/1749-1762:0.00000,Q9HGZ5_ASPOR/1691-1704:0.23644):0.14592,((((Q9XZS1_DROGU/1842-1855:0.21760,O08847_MOUSE/1875-1888:0.14239):0.00000,((Q9AXN1_9FLOR/1653-1667:0.32108,O08847_MOUSE/1948-1961:0.21652):0.04836,Q9HGZ5_ASPOR/1705-1719:0.00000):0.07106):0.09517,((O77375_PLAF7/2345-2358:0.17830,O08847_MOUSE/1903-1916:0.07628):0.00000,O77375_PLAF7/2289-2302:0.17058):0.14448):0.00000,Q9XZS1_DROGU/1856-1869:0.24748):0.06158):0.00000,(((Q9XZS1_DROGU/1620-1633:0.60075,RPB1_ARATH/1721-1734:0.09150):0.44425,Q9FI54_ARATH/121-134:0.34077):0.03569,(((((((RPB1_CAEEL/1498-1512:0.35727,Q99367_SOYBN/440-453:0.04908):0.51416,(Q9BMP3_MONBE/1556-1570:0.00000,O09451_9FLOR/1525-1538:1.22578):0.17361):0.14223,((Q9FI54_ARATH/149-162:0.43446,(Q99368_SOYBN/934-947:0.02701,RPB1_ARATH/1789-1801:0.45953):0.36775):0.29708,Q9XZS1_DROGU/1730-1742:0.00000):0.07005):0.08132,(((O09451_9FLOR/1625-1638:0.53677,Q9AXN0_9EUKA/1670-1686:0.35258):0.00000,Q9XZS1_DROGU/1590-1605:0.00000):0.11992,Q9XZS1_DROGU/1674-1687:0.29080):0.00000):0.11631,(RPB1_CAEEL/1759-1772:0.46184,Q99368_SOYBN/920-933:0.01104):0.35563):0.00000,(Q9XZS1_DROGU/1871-1884:0.10173,(O77375_PLAF7/2377-2390:0.18609,((((((Q9XZS1_DROGU/1550-1563:0.40797,(O08847_MOUSE/1555-1569:0.62906,(Q9BMP3_MONBE/1527-1540:0.06422,Q9HGZ5_ASPOR/1601-1614:0.28569):0.00000):0.10992):0.02635,(Q99368_SOYBN/954-967:0.13958,RPB1_ARATH/1802-1815:0.12886):0.36297):0.08224,Q9HGZ5_ASPOR/1735-1748:0.08764):0.11344,Q9AXN0_9EUKA/1656-1669:0.13895):0.01431,O09451_9FLOR/1658-1672:0.11398):0.02767,(O77375_PLAF7/2168-2181:0.71006,Q9HGZ5_ASPOR/1558-1572:0.10849):0.19550):0.10694):0.00000):0.15076):0.00000,O00820_ACACA/1539-1552:0.00000):0.00000):0.07484):0.00000,((((Q9HGZ5_ASPOR/1722-1734:0.00000,((O04142_PORYE/1595-1608:0.27940,Q9AXN0_9EUKA/1586-1599:0.57377):0.35232,RPB1_YEAST/1529-1542:0.13068):0.36719):0.00000,(O94231_KLULA/212-229:0.19643,RPB1_SCHPO/1545-1558:0.29409):0.08391):0.03502,((O04142_PORYE/1550-1563:0.16600,Q9HGZ5_ASPOR/1587-1600:0.16676):0.03190,Q9XZS1_DROGU/1606-1619:0.24432):0.31910):0.14159,Q9BMP3_MONBE/1513-1526:0.08113):0.07763):0.08041,Q9FI54_ARATH/135-148:0.64011):0.08202,((O77375_PLAF7/2243-2256:0.12285,Q25655_PLABE/79-92:0.31127):0.29964,(O08847_MOUSE/1587-1600:0.04813,Q9AXN0_9EUKA/1545-1556:0.25072):0.00191):0.21046):0.00000,O00820_ACACA/1525-1538:0.00000):0.06978,((RPB1_CAEEL/1549-1567:0.28905,RPB1_YEAST/1711-1724:0.81538):0.08970,(((Q9XZS1_DROGU/1743-1756:0.00000,Q9C428_9FUNG/1503-1516:1.19191):0.25058,(((((Q9XZS1_DROGU/1801-1813:0.35787,((Q9XZS1_DROGU/1773-1786:0.28391,O08847_MOUSE/1847-1860:0.10204):0.00000,O08847_MOUSE/1805-1818:0.28022):0.15943):0.00000,((Q99368_SOYBN/892-905:0.17161,RPB1_CAEEL/1576-1589:0.16621):0.00000,(Q9C428_9FUNG/1434-1447:0.66606,Q99367_SOYBN/454-466:0.08029):0.12139):0.15116):0.00000,Q25655_PLABE/108-124:0.15720):0.08154,(O77375_PLAF7/2257-2270:0.49903,(O77375_PLAF7/2363-2376:0.42519,Q9XZS1_DROGU/1828-1841:0.49466):0.00000):0.25266):0.00000,O00820_ACACA/1511-1524:0.00000):0.07034):0.08181,(((O09451_9FLOR/1677-1690:0.20117,O77165_9EUKA/1500-1513:0.06982):0.08291,(((O77375_PLAF7/2393-2406:0.94638,Q9BMP3_MONBE/1712-1726:0.23420):0.02116,Q9XZS1_DROGU/1814-1827:0.34821):0.27613,Q9XZS1_DROGU/1634-1647:0.12752):0.06369):0.14781,(((Q99368_SOYBN/879-891:0.25358,RPB1_DROME/1625-1638:0.25350):0.25787,O04142_PORYE/1631-1644:0.09726):0.09612,O00820_ACACA/1483-1496:0.26732):0.00000):0.08144):0.00000):0.00000):0.04243,O77165_9EUKA/1654-1667:0.15288):0.02818,(((O04142_PORYE/1579-1592:0.26553,O09451_9FLOR/1574-1587:0.00000):0.11702,Q9AXN1_9FLOR/1572-1585:0.11182):0.08331,Q9BMP3_MONBE/1498-1511:0.70846):0.07603):0.00000,(((O96446_9MICR/1461-1474:0.23764,Q9AXN1_9FLOR/1625-1638:0.56815):0.13799,O96452_ANTLO/1432-1446:0.14134):0.08564,Q9HGZ5_ASPOR/1615-1628:0.00000):0.07174):0.49467,Q9H5H4_HUMAN/74-87:0.74946):0.52567,Q9H5H4_HUMAN/109-122:0.00000):0.37702,Q9H5H4_HUMAN/95-108:0.09332):0.19383,Q9H5H4_HUMAN/39-52:0.20504,Q9H5H4_HUMAN/53-66:0.09063);
RTP  (((((((((((((((O08847_MOUSE/1749-1762,Q9HGZ5_ASPOR/1691-1704),((((Q9XZS1_DROGU/1842-1855,O08847_MOUSE/1875-1888),((Q9AXN1_9FLOR/1653-1667,O08847_MOUSE/1948-1961),Q9HGZ5_ASPOR/1705-1719)),((O77375_PLAF7/2345-2358,O08847_MOUSE/1903-1916),O77375_PLAF7/2289-2302)),Q9XZS1_DROGU/1856-1869)),(((Q9XZS1_DROGU/1620-1633,RPB1_ARATH/1721-1734),Q9FI54_ARATH/121-134),(((((((RPB1_CAEEL/1498-1512,Q99367_SOYBN/440-453),(Q9BMP3_MONBE/1556-1570,O09451_9FLOR/1525-1538)),((Q9FI54_ARATH/149-162,(Q99368_SOYBN/934-947,RPB1_ARATH/1789-1801)),Q9XZS1_DROGU/1730-1742)),(((O09451_9FLOR/1625-1638,Q9AXN0_9EUKA/1670-1686),Q9XZS1_DROGU/1590-1605),Q9XZS1_DROGU/1674-1687)),(RPB1_CAEEL/1759-1772,Q99368_SOYBN/920-933)),(Q9XZS1_DROGU/1871-1884,(O77375_PLAF7/2377-2390,((((((Q9XZS1_DROGU/1550-1563,(O08847_MOUSE/1555-1569,(Q9BMP3_MONBE/1527-1540,Q9HGZ5_ASPOR/1601-1614))),(Q99368_SOYBN/954-967,RPB1_ARATH/1802-1815)),Q9HGZ5_ASPOR/1735-1748),Q9AXN0_9EUKA/1656-1669),O09451_9FLOR/1658-1672),(O77375_PLAF7/2168-2181,Q9HGZ5_ASPOR/1558-1572))))),O00820_ACACA/1539-1552))),((((Q9HGZ5_ASPOR/1722-1734,((O04142_PORYE/1595-1608,Q9AXN0_9EUKA/1586-1599),RPB1_YEAST/1529-1542)),(O94231_KLULA/212-229,RPB1_SCHPO/1545-1558)),((O04142_PORYE/1550-1563,Q9HGZ5_ASPOR/1587-1600),Q9XZS1_DROGU/1606-1619)),Q9BMP3_MONBE/1513-1526)),Q9FI54_ARATH/135-148),((O77375_PLAF7/2243-2256,Q25655_PLABE/79-92),(O08847_MOUSE/1587-1600,Q9AXN0_9EUKA/1545-1556))),O00820_ACACA/1525-1538),((RPB1_CAEEL/1549-1567,RPB1_YEAST/1711-1724),(((Q9XZS1_DROGU/1743-1756,Q9C428_9FUNG/1503-1516),(((((Q9XZS1_DROGU/1801-1813,((Q9XZS1_DROGU/1773-1786,O08847_MOUSE/1847-1860),O08847_MOUSE/1805-1818)),((Q99368_SOYBN/892-905,RPB1_CAEEL/1576-1589),(Q9C428_9FUNG/1434-1447,Q99367_SOYBN/454-466))),Q25655_PLABE/108-124),(O77375_PLAF7/2257-2270,(O77375_PLAF7/2363-2376,Q9XZS1_DROGU/1828-1841))),O00820_ACACA/1511-1524)),(((O09451_9FLOR/1677-1690,O77165_9EUKA/1500-1513),(((O77375_PLAF7/2393-2406,Q9BMP3_MONBE/1712-1726),Q9XZS1_DROGU/1814-1827),Q9XZS1_DROGU/1634-1647)),(((Q99368_SOYBN/879-891,RPB1_DROME/1625-1638),O04142_PORYE/1631-1644),O00820_ACACA/1483-1496))))),O77165_9EUKA/1654-1667),(((O04142_PORYE/1579-1592,O09451_9FLOR/1574-1587),Q9AXN1_9FLOR/1572-1585),Q9BMP3_MONBE/1498-1511)),(((O96446_9MICR/1461-1474,Q9AXN1_9FLOR/1625-1638),O96452_ANTLO/1432-1446),Q9HGZ5_ASPOR/1615-1628)),Q9H5H4_HUMAN/74-87),Q9H5H4_HUMAN/109-122),Q9H5H4_HUMAN/95-108),Q9H5H4_HUMAN/39-52,Q9H5H4_HUMAN/53-66);
RTL  38.6421
LNK  O00820_ACACA/1483-1496:O00820:U90211
LNK  O00820_ACACA/1511-1524:O00820:U90211
LNK  O00820_ACACA/1525-1538:O00820:U90211
LNK  O00820_ACACA/1539-1552:O00820:U90211
LNK  O04142_PORYE/1550-1563:O04142:U90208
LNK  O04142_PORYE/1579-1592:O04142:U90208
LNK  O04142_PORYE/1595-1608:O04142:U90208
LNK  O04142_PORYE/1631-1644:O04142:U90208
LNK  O08847_MOUSE/1555-1569:O08847:U37500
LNK  O08847_MOUSE/1587-1600:O08847:U37500
LNK  O08847_MOUSE/1749-1762:O08847:U37500
LNK  O08847_MOUSE/1805-1818:O08847:U37500
LNK  O08847_MOUSE/1847-1860:O08847:U37500
LNK  O08847_MOUSE/1875-1888:O08847:U37500
LNK  O08847_MOUSE/1903-1916:O08847:U37500
LNK  O08847_MOUSE/1948-1961:O08847:U37500
LNK  O09451_9FLOR/1525-1538:O09451:U90209
LNK  O09451_9FLOR/1574-1587:O09451:U90209
LNK  O09451_9FLOR/1625-1638:O09451:U90209
LNK  O09451_9FLOR/1658-1672:O09451:U90209
LNK  O09451_9FLOR/1677-1690:O09451:U90209
LNK  O77165_9EUKA/1500-1513:O77165:AF083338
LNK  O77165_9EUKA/1654-1667:O77165:AF083338
LNK  O77375_PLAF7/2168-2181:O77375:Z98551
LNK  O77375_PLAF7/2243-2256:O77375:Z98551
LNK  O77375_PLAF7/2257-2270:O77375:Z98551
LNK  O77375_PLAF7/2289-2302:O77375:Z98551
LNK  O77375_PLAF7/2345-2358:O77375:Z98551
LNK  O77375_PLAF7/2363-2376:O77375:Z98551
LNK  O77375_PLAF7/2377-2390:O77375:Z98551
LNK  O77375_PLAF7/2393-2406:O77375:Z98551
LNK  O94231_KLULA/212-229:O94231:U24217
LNK  O96446_9MICR/1461-1474:O96446:AF060234
LNK  O96452_ANTLO/1432-1446:O96452:AF061288
LNK  Q25655_PLABE/108-124:Q25655:X61281
LNK  Q25655_PLABE/79-92:Q25655:X61281
LNK  Q99367_SOYBN/440-453:Q99367:X52493
LNK  Q99367_SOYBN/454-466:Q99367:X52493
LNK  Q99368_SOYBN/879-891:Q99368:X52495
LNK  Q99368_SOYBN/892-905:Q99368:X52495
LNK  Q99368_SOYBN/920-933:Q99368:X52495
LNK  Q99368_SOYBN/934-947:Q99368:X52495
LNK  Q99368_SOYBN/954-967:Q99368:X52495
LNK  Q9AXN0_9EUKA/1545-1556:Q9AXN0:AF315820
LNK  Q9AXN0_9EUKA/1586-1599:Q9AXN0:AF315820
LNK  Q9AXN0_9EUKA/1656-1669:Q9AXN0:AF315820
LNK  Q9AXN0_9EUKA/1670-1686:Q9AXN0:AF315820
LNK  Q9AXN1_9FLOR/1572-1585:Q9AXN1:AF315819
LNK  Q9AXN1_9FLOR/1625-1638:Q9AXN1:AF315819
LNK  Q9AXN1_9FLOR/1653-1667:Q9AXN1:AF315819
LNK  Q9BMP3_MONBE/1498-1511:Q9BMP3:AF315821
LNK  Q9BMP3_MONBE/1513-1526:Q9BMP3:AF315821
LNK  Q9BMP3_MONBE/1527-1540:Q9BMP3:AF315821
LNK  Q9BMP3_MONBE/1556-1570:Q9BMP3:AF315821
LNK  Q9BMP3_MONBE/1712-1726:Q9BMP3:AF315821
LNK  Q9C428_9FUNG/1434-1447:Q9C428:AF315822
LNK  Q9C428_9FUNG/1503-1516:Q9C428:AF315822
LNK  Q9FI54_ARATH/121-134:Q9FI54:AB017063
LNK  Q9FI54_ARATH/135-148:Q9FI54:AB017063
LNK  Q9FI54_ARATH/149-162:Q9FI54:AB017063
LNK  Q9H5H4_HUMAN/109-122:Q9H5H4:AK027089
LNK  Q9H5H4_HUMAN/39-52:Q9H5H4:AK027089
LNK  Q9H5H4_HUMAN/53-66:Q9H5H4:AK027089
LNK  Q9H5H4_HUMAN/74-87:Q9H5H4:AK027089
LNK  Q9H5H4_HUMAN/95-108:Q9H5H4:AK027089
LNK  Q9HGZ5_ASPOR/1558-1572:Q9HGZ5:AB017184
LNK  Q9HGZ5_ASPOR/1587-1600:Q9HGZ5:AB017184
LNK  Q9HGZ5_ASPOR/1601-1614:Q9HGZ5:AB017184
LNK  Q9HGZ5_ASPOR/1615-1628:Q9HGZ5:AB017184
LNK  Q9HGZ5_ASPOR/1691-1704:Q9HGZ5:AB017184
LNK  Q9HGZ5_ASPOR/1705-1719:Q9HGZ5:AB017184
LNK  Q9HGZ5_ASPOR/1722-1734:Q9HGZ5:AB017184
LNK  Q9HGZ5_ASPOR/1735-1748:Q9HGZ5:AB017184
LNK  Q9XZS1_DROGU/1550-1563:Q9XZS1:Y18878
LNK  Q9XZS1_DROGU/1590-1605:Q9XZS1:Y18878
LNK  Q9XZS1_DROGU/1606-1619:Q9XZS1:Y18878
LNK  Q9XZS1_DROGU/1620-1633:Q9XZS1:Y18878
LNK  Q9XZS1_DROGU/1634-1647:Q9XZS1:Y18878
LNK  Q9XZS1_DROGU/1674-1687:Q9XZS1:Y18878
LNK  Q9XZS1_DROGU/1730-1742:Q9XZS1:Y18878
LNK  Q9XZS1_DROGU/1743-1756:Q9XZS1:Y18878
LNK  Q9XZS1_DROGU/1773-1786:Q9XZS1:Y18878
LNK  Q9XZS1_DROGU/1801-1813:Q9XZS1:Y18878
LNK  Q9XZS1_DROGU/1814-1827:Q9XZS1:Y18878
LNK  Q9XZS1_DROGU/1828-1841:Q9XZS1:Y18878
LNK  Q9XZS1_DROGU/1842-1855:Q9XZS1:Y18878
LNK  Q9XZS1_DROGU/1856-1869:Q9XZS1:Y18878
LNK  Q9XZS1_DROGU/1871-1884:Q9XZS1:Y18878
LNK  RPB1_ARATH/1721-1734:P18616:X52954
LNK  RPB1_ARATH/1789-1801:P18616:X52954
LNK  RPB1_ARATH/1802-1815:P18616:X52954
LNK  RPB1_CAEEL/1498-1512:P16356:M29235
LNK  RPB1_CAEEL/1549-1567:P16356:M29235
LNK  RPB1_CAEEL/1576-1589:P16356:M29235
LNK  RPB1_CAEEL/1759-1772:P16356:M29235
LNK  RPB1_DROME/1625-1638:P04052:M27431
LNK  RPB1_SCHPO/1545-1558:P36594:X56564
LNK  RPB1_YEAST/1529-1542:P04050:X03128
LNK  RPB1_YEAST/1711-1724:P04050:X03128
AMK  xx..x.xx.....x..x..xx...x.xxxx
DMK  xxxxxx......xxx...xxxxxx...............xxx......xxx......xxxxxx.........xxx...xxxxxxxxxxxx
NAM  RPB1_YEAST/1711-1724
ASQ  SP..G.SP.....A..Y..SP...K.QDEQ
DSQ  AGCCCA......GGA...TCTCCT...............GCA......TAT......TCTCCA.........AAG...CAAGACGAACAA
TRN  11111111111111111
NAM  Q9C428_9FUNG/1503-1516
ASQ  SP..S.SP.....V..Y..SM...W.LASF
DSQ  AGCCCG......TCG...AGCCCT...............GTG......TAC......AGTATG.........TGG...CTTGCAAGTTTC
TRN  11011111111111111
NAM  RPB1_YEAST/1529-1542
ASQ  AP..T.SP.....G..F..GV...S.SPGF
DSQ  GCACCT......ACA...TCTCCC...............GGA......TTT......GGAGTC.........TCC...TCACCAGGCTTT
TRN  11111111111111101
NAM  Q9XZS1_DROGU/1606-1619
ASQ  SP..T.SP.....L..Y..AA...P.SPRY
DSQ  TCGCCG......ACA...TCGCCG...............CTA......TAT......GCTGCG.........CCC...AGTCCACGGTAT
TRN  11011111111111111
NAM  Q9HGZ5_ASPOR/1587-1600
ASQ  SP..T.SP.....G..M..AM...T.SPRF
DSQ  TCACCA......ACG...TCTCCT...............GGT......ATG......GCAATG.........ACC...AGCCCTCGCTTC
TRN  11111111111111101
NAM  O04142_PORYE/1550-1563
ASQ  SP..A.SP.....G..Y..AA...M.SPRF
DSQ  TCACCA......GCT...TCTCCG...............GGT......TAC......GCGGCA.........ATG...AGCCCACGCTTT
TRN  11111111111111101
NAM  Q9AXN0_9EUKA/1586-1599
ASQ  SP..S.SP.....G..G..VA...A.SPGY
DSQ  AGTCCG......TCG...AGCCCA...............GGT......GGT......GTGGCC.........GCG...TCTCCGGGATAC
TRN  11111111111111111
NAM  O04142_PORYE/1595-1608
ASQ  SP..S.TP.....A..L..AV...S.SPGY
DSQ  TCGCCG......TCC...ACGCCT...............GCC......TTG......GCGGTC.........AGT...AGCCCTGGGTAC
TRN  11111111111111111
NAM  O09451_9FLOR/1525-1538
ASQ  VP..L.SP.....G..G..GG...T.SPFY
DSQ  GTTCCT......TTG...AGCCCC...............GGT......GGC......GGAGGC.........ACA...AGCCCGTTCTAC
TRN  11111111111111111
NAM  RPB1_SCHPO/1545-1558
ASQ  SA..M.SP.....G..Y..GL...T.SPSY
DSQ  TCTGCT......ATG...AGTCCT...............GGG......TAT......GGACTT.........ACT...TCACCAAGCTAT
TRN  11011111111111101
NAM  O94231_KLULA/212-229
ASQ  SA..T.SP.....FsgYgnGP...T.SPGF
DSQ  TCTGCA......ACC...TCTCCG...............TTCagtggaTATggtaacGGCCCT.........ACT...TCCCCTGGCTTT
TRN  11111111111111111
NAM  RPB1_ARATH/1789-1801
ASQ  SG..A.SP.....D..Y..SP...-.SAGY
DSQ  TCAGGA......GCA...AGCCCA...............GAC......TAC......AGCCCA.........---...AGCGCAGGCTAC
TRN  11111111111111101
NAM  Q99368_SOYBN/934-947
ASQ  SG..V.SP.....D..Y..SP...T.SPQF
DSQ  TCTGGT......GTG...AGCCCG...............GAC......TAT......AGCCCA.........ACT...TCCCCCCAATTT
TRN  11111111111111111
NAM  Q9FI54_ARATH/149-162
ASQ  SL..V.SP.....Q..Y..SP...T.STHH
DSQ  AGCCTT......GTC...TCTCCT...............CAA......TAC......TCCCCT.........ACC...TCTACTCACCAC
TRN  11011111111111111
NAM  Q9XZS1_DROGU/1871-1884
ASQ  SP..T.SP.....A..Y..SP...S.SPTF
DSQ  AGTCCC......ACA...AGTCCA...............GCG......TAC......TCGCCC.........AGC...AGTCCCACGTTC
TRN  11111111111111111
NAM  O77375_PLAF7/2377-2390
ASQ  SP..T.SP.....A..Y..SI...S.SPVY
DSQ  TCACCA......ACA...TCTCCA...............GCA......TAT......TCGATA.........AGT...TCACCTGTGTAC
TRN  10010111110111001
NAM  Q9HGZ5_ASPOR/1735-1748
ASQ  SP..T.SP.....A..F..SP...S.SPRQ
DSQ  AGTCCG......ACG...TCGCCG...............GCG......TTC......AGCCCT.........TCG...TCCCCTCGCCAG
TRN  11111111111111111
NAM  Q9XZS1_DROGU/1590-1605
ASQ  SPggA.SP.....N..Y..SP...S.SPNY
DSQ  TCGCCCggcggtGCA...TCGCCC...............AAC......TAC......TCACCC.........TCG...AGTCCCAACTAT
TRN  11111111111111101
NAM  Q9BMP3_MONBE/1513-1526
ASQ  SP..T.SP.....S..Y..SP...T.SPGM
DSQ  TCGCCC......ACC...AGCCCC...............AGC......TAC......AGCCCC.........ACT...TCGCCTGGGATG
TRN  11111111111111111
NAM  O00820_ACACA/1539-1552
ASQ  SP..T.SP.....S..Y..SP...S.SPSY
DSQ  TCTCCC......ACA...TCGCCC...............TCC......TAC......TCTCCG.........TCG...TCACCTTCGTAC
TRN  11111111111111101
NAM  O00820_ACACA/1525-1538
ASQ  SP..A.SP.....S..Y..SP...T.SPAY
DSQ  AGTCCC......GCC...TCTCCC...............TCC......TAC......TCCCCC.........ACC...TCGCCGGCGTAC
TRN  11111111111111111
NAM  Q9AXN0_9EUKA/1656-1669
ASQ  SP..T.SP.....M..Y..SP...S.SPAM
DSQ  AGCCCG......ACG...AGCCCG...............ATG......TAT......TCTCCT.........TCG...AGCCCAGCAATG
TRN  11111111111111111
NAM  Q99368_SOYBN/920-933
ASQ  SP..S.SP.....T..Y..SP...S.SPYN
DSQ  TCTCCA......TCA...AGCCCA...............ACA......TAC......AGTCCC.........AGC...AGTCCATATAAT
TRN  11111111111111101
NAM  O09451_9FLOR/1658-1672
ASQ  SP..S.SP....gA..Y..SP...S.SPAA
DSQ  AGTCCA......AGC...TCTCCT............ggtGCC......TAC......AGTCCG.........AGT...TCTCCCGCAGCA
TRN  11111111111111111
NAM  O00820_ACACA/1511-1524
ASQ  SP..S.SP.....A..Y..SP...T.SPKY
DSQ  TCGCCC......TCG...TCGCCG...............GCC......TAC......TCCCCC.........ACC...TCTCCCAAGTAC
TRN  11111111111111111
NAM  O00820_ACACA/1483-1496
ASQ  SP..S.SP.....G..Y..SP...S.SPGY
DSQ  AGCCCC......TCG...TCGCCC...............GGC......TAT......TCACCC.........TCA...TCGCCCGGCTAT
TRN  11111111111111101
NAM  Q9HGZ5_ASPOR/1722-1734
ASQ  SP..T.SP.....G..-..GP...T.SPGY
DSQ  TCGCCG......ACC...TCTCCC...............GGA......---......GGACCT.........ACA...TCCCCAGGTTAT
TRN  11111111111111111
NAM  O04142_PORYE/1631-1644
ASQ  SP..Q.SP.....G..Y..VP...T.SPAY
DSQ  TCTCCG......CAA...TCTCCA...............GGC......TAC......GTGCCC.........ACT...AGTCCTGCGTAT
TRN  11111111111111111
NAM  Q9HGZ5_ASPOR/1691-1704
ASQ  SP..T.SP.....K..Y..TP...T.SPGW
DSQ  TCACCA......ACC...TCTCCA...............AAG......TAT......ACACCC.........ACA...TCTCCTGGGTGG
TRN  11111111111111101
NAM  O08847_MOUSE/1749-1762
ASQ  SP..T.SP.....N..Y..TP...T.SPSY
DSQ  TCTCCA......ACT...AGTCCC...............AAC......TAT......ACCCCG.........ACA...TCACCCAGCTAC
TRN  11111111111111101
NAM  Q9HGZ5_ASPOR/1705-1719
ASQ  SP..T.SP....qT..Y..SP...T.SPNF
DSQ  TCTCCT......ACG...AGCCCT............cagACA......TAC......TCTCCT.........ACC...TCTCCTAATTTT
TRN  11111111111111111
NAM  O08847_MOUSE/1948-1961
ASQ  SP..T.SP.....T..Y..SL...T.SPAI
DSQ  TCACCC......ACT...AGCCCC...............ACC......TAC......AGCCTC.........ACC...AGCCCAGCCATC
TRN  11011111111111101
NAM  O77375_PLAF7/2345-2358
ASQ  SP..T.SP.....K..Y..SP...T.SPVA
DSQ  TCGCCC......ACA...TCACCA...............AAA......TAT......TCACCA.........ACA...TCACCAGTTGCA
TRN  11111101111011001
NAM  O08847_MOUSE/1903-1916
ASQ  TP..T.SP.....K..Y..SP...T.SPTY
DSQ  ACCCCG......ACC...TCTCCC...............AAG......TAC......TCCCCA.........ACC...AGCCCTACCTAC
TRN  11111111111111111
NAM  O77375_PLAF7/2289-2302
ASQ  SV..T.SP.....K..Y..SP...T.SPKY
DSQ  TCAGTA......ACA...TCACCA...............AAA......TAT......TCACCT.........ACA...TCACCAAAATAT
TRN  11111101111011001
NAM  O08847_MOUSE/1875-1888
ASQ  SP..T.SP.....T..Y..SP...T.TPKY
DSQ  TCTCCT......ACC...AGCCCC...............ACT......TAC......TCACCT.........ACC...ACCCCAAAATAT
TRN  11111101111011001
NAM  Q9XZS1_DROGU/1856-1869
ASQ  SP..T.SP.....M..Y..SP...T.APSH
DSQ  TCACCA......ACA...TCGCCC...............ATG......TAC......TCGCCC.........ACG...GCGCCTTCGCAC
TRN  11111111111111101
NAM  Q9XZS1_DROGU/1674-1687
ASQ  SP..S.ST.....N..Y..SP...N.SPSY
DSQ  TCGCCC......AGT...TCCACC...............AAT......TAT......TCGCCG.........AAC...TCGCCCTCATAC
TRN  11111111111111101
NAM  Q9AXN1_9FLOR/1653-1667
ASQ  SP..G.SP....hT..Y..SP...N.SPVF
DSQ  AGTCCG......GGT...TCGCCA............catACG......TAC......AGTCCT.........AAC...TCTCCTGTATTT
TRN  11111111111111111
NAM  Q9XZS1_DROGU/1773-1786
ASQ  SP..G.SP.....Q..Y..TP...G.SPQY
DSQ  TCTCCA......GGA...TCGCCA...............CAA......TAC......ACGCCC.........GGC...TCGCCTCAATAT
TRN  11111111111111111
NAM  O08847_MOUSE/1847-1860
ASQ  SP..S.SP.....E..Y..TP...A.SPKY
DSQ  AGTCCC......AGC...TCACCA...............GAG......TAC......ACCCCA.........GCT...TCTCCCAAATAC
TRN  11111101111011001
NAM  O08847_MOUSE/1805-1818
ASQ  SP..S.SP.....R..Y..TP...Q.SPTY
DSQ  TCCCCC......TCC...AGCCCA...............CGA......TAT......ACACCA.........CAG...TCTCCAACCTAC
TRN  11111111111111111
NAM  Q9XZS1_DROGU/1730-1742
ASQ  SP..T.SP.....N..Y..S-...A.SPHY
DSQ  TCGCCT......ACA...TCGCCA...............AAC......TAT......TCG---.........GCA...TCGCCCCACTAC
TRN  11111111111111111
NAM  Q9BMP3_MONBE/1556-1570
ASQ  SP..T.SP.....N..V..GG...AqSPSY
DSQ  AGTCCA......ACG...TCACCC...............AAC......GTG......GGCGGC.........GCGcaaTCGCCTTCGTAC
TRN  11111111111111101
NAM  Q9XZS1_DROGU/1801-1813
ASQ  SP..S.SP.....Q..H..SP...-.SNQY
DSQ  TCGCCC......AGC...TCCCCG...............CAG......CAC......TCGCCG.........---...TCGAATCAGTAC
TRN  11111111111111111
NAM  Q99367_SOYBN/454-466
ASQ  SP..S.SP.....Q..F..SP...-.STGY
DSQ  AGCCCA......AGT...TCGCCC...............CAA......TTT......AGTCCC.........---...AGTACGGGTTAC
TRN  11111111111111111
NAM  RPB1_CAEEL/1576-1589
ASQ  SP..S.SP.....Q..F..SM...T.SPHY
DSQ  TCTCCA......TCG...TCTCCG...............CAG......TTC......TCGATG.........ACT...TCACCACACTAT
TRN  11111111111111101
NAM  Q99368_SOYBN/892-905
ASQ  SP..S.SP.....R..L..SP...T.SPNY
DSQ  TCTCCA......AGC...AGTCCA...............AGA......TTG......TCTCCC.........ACA...TCTCCAAACTAT
TRN  10110101110011011
NAM  Q25655_PLABE/108-124
ASQ  NP..S.SP.....Q..Y..SPysiT.SPKF
DSQ  AATCCT......AGT...AGCCCA...............CAA......TAT......TCTCCAtattcaattACT...TCTCCAAAATTT
TRN  11111101111011001
NAM  RPB1_CAEEL/1759-1772
ASQ  TP..S.SP.....T..Y..NP...T.SPRG
DSQ  ACTCCA......TCC...TCGCCG...............ACA......TAC......AATCCA.........ACA...TCTCCACGCGGA
TRN  11111111111111111
NAM  Q9HGZ5_ASPOR/1615-1628
ASQ  AP..T.SP.....A..Y..SP...T.SPAY
DSQ  GCACCG......ACA...TCACCT...............GCT......TAC......TCGCCA.........ACT...TCACCGGCGTAT
TRN  11111111111111101
NAM  O77165_9EUKA/1654-1667
ASQ  GP..A.SP.....A..Y..SP...A.SPAY
DSQ  GGCCCA......GCC...TCACCT...............GCC......TAT......AGCCCA.........GCA...TCCCCTGCTTAT
TRN  11111111111111101
NAM  Q9AXN0_9EUKA/1545-1556
ASQ  AA..F.SP.....T..-..-P...T.SPAY
DSQ  GCTGCC......TTC...TCCCCG...............ACC......---......---CCG.........ACG...AGTCCTGCGTAT
TRN  11111111111111111
NAM  O08847_MOUSE/1587-1600
ASQ  GA..M.SP.....S..Y..SP...T.SPAY
DSQ  GGTGCT......ATG...TCTCCC...............AGC......TAC......TCACCG.........ACA...TCACCAGCCTAT
TRN  11111111111111101
NAM  O96452_ANTLO/1432-1446
ASQ  AG..T.TP....sV..Y..SP...T.SPAY
DSQ  GCTGGG......ACC...ACACCT............tcaGTA......TAC......TCTCCA.........ACG...TCGCCTGCATAC
TRN  11111111111111101
NAM  Q9HGZ5_ASPOR/1558-1572
ASQ  AA..T.SP.....A.gY..SP...S.SPFS
DSQ  GCGGCC......ACG...AGTCCA...............GCC...ggcTAT......TCTCCC.........AGT...AGCCCATTCAGT
TRN  11111111111111111
NAM  Q25655_PLABE/79-92
ASQ  NI..M.SP.....V..Y..SV...T.SPKY
DSQ  AATATT......ATG...TCTCCT...............GTT......TAT......TCAGTA.........ACT...TCGCCAAAATAT
TRN  11111101111011001
NAM  O77375_PLAF7/2243-2256
ASQ  NI..Y.SP.....S..Y..SP...T.SPTY
DSQ  AATATT......TAT...TCACCT...............TCA......TAT......TCACCA.........ACA...TCACCTACGTAT
TRN  11111111111111101
NAM  Q9HGZ5_ASPOR/1601-1614
ASQ  SM..T.SP.....G..F..SP...A.SPSF
DSQ  TCTATG......ACG...TCTCCG...............GGT......TTC......TCTCCT.........GCC...AGCCCGTCATTC
TRN  11111111111111101
NAM  Q9BMP3_MONBE/1527-1540
ASQ  SP..T.SP.....G..F..SP...A.SPAG
DSQ  TCTCCC......ACC...TCGCCC...............GGG......TTT......TCTCCG.........GCC...TCGCCTGCGGGG
TRN  11111111111111111
NAM  O08847_MOUSE/1555-1569
ASQ  SG..F.SP.....G..Y..SP...AwSPTP
DSQ  AGTGGC......TTC...AGCCCA...............GGT......TAC......TCCCCT.........GCAtggTCTCCCACACCA
TRN  11111111111111111
NAM  Q9XZS1_DROGU/1842-1855
ASQ  SP..T.SP.....T..Y..TP...T.ARNY
DSQ  TCGCCG......ACA...TCGCCA...............ACG......TAC......ACGCCC.........ACG...GCACGCAACTAT
TRN  11111111111111111
NAM  Q9FI54_ARATH/135-148
ASQ  SP..D.SH.....S..Y..SP...V.SPDH
DSQ  AGCCCT......GAC...TCTCAT...............AGT......TAC......AGCCCT.........GTC...TCTCCTGATCAC
TRN  11111111111111111
NAM  RPB1_ARATH/1721-1734
ASQ  GP..T.SP.....S..Y..NP...Q.SAKY
DSQ  GGTCCT......ACG...TCTCCA...............AGC......TAC......AACCCT.........CAG...TCTGCTAAATAT
TRN  11111101111011011
NAM  Q9FI54_ARATH/121-134
ASQ  SP..T.SP.....S..Y..RP...N.SSSD
DSQ  AGCCCT......ACC...TCTCCT...............AGT......TAC......AGGCCT.........AAC...TCTTCTAGTGAC
TRN  10110101110011011
NAM  Q9XZS1_DROGU/1743-1756
ASQ  SP..A.SP.....A..Y..SQ...T.GAKY
DSQ  TCACCG......GCA...TCGCCG...............GCC......TAC......TCCCAG.........ACA...GGGGCCAAGTAC
TRN  11111111111111101
NAM  Q9AXN1_9FLOR/1572-1585
ASQ  AP..A.SP.....A..Y..KV...T.SPAP
DSQ  GCTCCA......GCA...AGTCCT...............GCA......TAC......AAAGTG.........ACT...TCTCCAGCTCCA
TRN  11111101111011011
NAM  O09451_9FLOR/1574-1587
ASQ  AP..A.SP.....A..Y..RP...T.SPGP
DSQ  GCTCCT......GCG...AGCCCT...............GCA......TAT......AGACCA.........ACA...TCGCCGGGACCG
TRN  10110101110011011
NAM  O04142_PORYE/1579-1592
ASQ  AP..A.SP.....A..Y..MA...T.SPGM
DSQ  GCTCCC......GCC...TCACCG...............GCC......TAC......ATGGCT.........ACC...TCTCCCGGAATG
TRN  11111111111111101
NAM  Q99367_SOYBN/440-453
ASQ  SP..S.SP.....Y..N..SG...V.SPDY
DSQ  AGTCCC......AGC...AGCCCT...............TAT......AAT......TCTGGT.........GTG...AGCCCAGACTAT
TRN  11111111111111111
NAM  RPB1_CAEEL/1498-1512
ASQ  SP..AhSP.....W..N..SG...V.TPTY
DSQ  TCGCCG......GCTcatTCGCCG...............TGG......AAC......TCTGGA.........GTC...ACACCGACGTAT
TRN  11111111111111111
NAM  RPB1_CAEEL/1549-1567
ASQ  SP..A.SPgdplgA..L..SP...R.TPSY
DSQ  TCTCCG......GCA...TCGCCTggggatccactgggaGCA......TTG......TCTCCG.........CGT...ACTCCGTCGTAT
TRN  11011111101111111
NAM  RPB1_DROME/1625-1638
ASQ  NP..Q.ST.....G..Y..SP...S.SSGY
DSQ  AATCCA......CAG...TCGACG...............GGT......TAC......TCGCCA.........TCT...TCATCGGGATAC
TRN  11111111111111101
NAM  Q99368_SOYBN/879-891
ASQ  NP..Q.SA.....K..Y..SP...-.SLAY
DSQ  AATCCA......CAA...TCAGCA...............AAA......TAT......AGTCCT.........---...TCGTTAGCTTAT
TRN  11111101111011000
NAM  RPB1_ARATH/1802-1815
ASQ  SP..T.LP.....G..Y..SP...S.STGQ
DSQ  TCGCCA......ACA...CTTCCC...............GGT......TAT......TCACCG.........TCA...TCAACGGGTCAG
TRN  11011111111111101
NAM  Q99368_SOYBN/954-967
ASQ  SP..S.QP.....G..Y..SP...S.STSQ
DSQ  TCACCA......AGT...CAACCC...............GGT......TAC......TCACCG.........TCG...TCAACCAGCCAG
TRN  11111111111111101
NAM  Q9XZS1_DROGU/1828-1841
ASQ  SP..N.MS.....I..Y..SP...S.STKY
DSQ  TCCCCC......AAT...ATGTCA...............ATC......TAC......TCGCCG.........AGC...AGCACCAAATAC
TRN  11111101111011001
NAM  Q9XZS1_DROGU/1634-1647
ASQ  SP..S.AS.....G..Y..SP...T.SPVY
DSQ  TCGCCA......TCG...GCATCT...............GGC......TAC......TCGCCC.........ACA...TCGCCGGTCTAC
TRN  11111111111111111
NAM  Q9AXN0_9EUKA/1670-1686
ASQ  SP..A.RAg..gvS..Y..SP...S.SPHY
DSQ  TCACCC......GCA...CGCGCAgga......ggggtcTCG......TAT......TCCCCT.........AGC...AGTCCGCATTAC
TRN  11111111111111101
NAM  O77165_9EUKA/1500-1513
ASQ  SP..A.AA.....G..Y..SP...A.SPAY
DSQ  TCCCCT......GCT...GCCGCC...............GGC......TAC......AGCCCA.........GCC...TCGCCGGCATAC
TRN  11111111111111111
NAM  O09451_9FLOR/1677-1690
ASQ  SP..A.AG.....G..Y..SP...S.TPAY
DSQ  TCTCCT......GCG...GCCGGT...............GGA......TAT......TCTCCA.........TCA...ACACCGGCGTAC
TRN  11111111111111101
NAM  Q9XZS1_DROGU/1550-1563
ASQ  SP..A.HP.....G..S..SP...S.SPAP
DSQ  TCGCCC......GCA...CATCCG...............GGC......TCC......TCGCCC.........AGC...TCTCCGGCACCC
TRN  11111111111111111
NAM  O77375_PLAF7/2168-2181
ASQ  SP..T.SV.....M..H..SP...F.SPFD
DSQ  TCACCA......ACA...TCTGTT...............ATG......CAT......TCACCA.........TTC...TCTCCTTTTGAT
TRN  11111111111111101
NAM  Q9BMP3_MONBE/1712-1726
ASQ  SP..T.AN....gT..S..GP...T.SPGY
DSQ  AGCCCG......ACA...GCCAAC............gggACA......AGC......GGCCCA.........ACC...AGCCCGGGCTAT
TRN  11111111111111111
NAM  Q9BMP3_MONBE/1498-1511
ASQ  VS..A.SP.....F..Y..DP...S.SPAG
DSQ  GTCAGT......GCC...AGCCCC...............TTT......TAT......GACCCT.........TCG...TCGCCGGCAGGC
TRN  11111111111111111
NAM  O09451_9FLOR/1625-1638
ASQ  GG..A.SR.....S..Y..SP...S.SPSY
DSQ  GGAGGT......GCG...TCGCGC...............AGT......TAC......TCTCCG.........TCT...AGCCCGAGCTAC
TRN  11111111111111111
NAM  Q9H5H4_HUMAN/109-122
ASQ  EP..R.SP.....G..Y..EP...R.SPGY
DSQ  GAACCT......CGG...AGCCCC...............GGG......TAT......GAACCC.........CGG...AGCCCTGGCTAT
TRN  11111111111111111
NAM  Q9H5H4_HUMAN/95-108
ASQ  ES..Q.SP.....R..Y..EP...Q.SPGY
DSQ  GAATCC......CAG...AGCCCT...............AGG......TAT......GAACCC.........CAA...AGCCCTGGCTAT
TRN  10110101110011011
NAM  Q9H5H4_HUMAN/53-66
ASQ  EP..Q.SP.....R..F..EP...E.SPGF
DSQ  GAACCC......CAA...AGCCCC...............AGA......TTT......GAGCCT.........GAA...AGCCCGGGGTTT
TRN  10110101110011011
NAM  Q9H5H4_HUMAN/39-52
ASQ  EP..Q.SP.....G..F..EP...Q.SPEF
DSQ  GAACCC......CAG...AGCCCT...............GGG......TTT......GAGCCA.........CAA...AGCCCAGAGTTT
TRN  11111111111111111
NAM  Q9H5H4_HUMAN/74-87
ASQ  VP..P.SP.....E..F..AP...R.SPES
DSQ  GTGCCC......CCA...AGCCCT...............GAG......TTT......GCACCC.........AGA...AGCCCTGAATCA
TRN  10110101110011001
NAM  Q9XZS1_DROGU/1814-1827
ASQ  SP..T.GS.....T..Y..SA...T.SPRY
DSQ  AGTCCC......ACT...GGATCC...............ACC......TAT......TCGGCC.........ACA...AGCCCACGGTAT
TRN  11111111111111111
NAM  O77375_PLAF7/2363-2376
ASQ  SP..N.YS.....P..Y..SI...T.SPKF
DSQ  AGTCCA......AAT...TATTCA...............CCT......TAT......TCAATA.........ACA...TCACCAAAATTT
TRN  10010101110011001
NAM  Q9AXN1_9FLOR/1625-1638
ASQ  RP..G.TG.....A..Y..SP...T.GPSY
DSQ  CGACCA......GGG...ACGGGA...............GCG......TAT......TCTCCA.........ACA...GGTCCAAGTTAC
TRN  11111111111111111
NAM  O96446_9MICR/1461-1474
ASQ  AP..K.TS.....L..Y..SP...T.SPTY
DSQ  GCGCCA......AAA...ACAAGT...............TTA......TAT......TCTCCG.........ACG...AGCCCGACTTAT
TRN  11111101111011010
NAM  Q9C428_9FUNG/1434-1447
ASQ  SP..S.GA.....Q..F..YP...A.SPGG
DSQ  TCGCCG......TCT...GGTGCG...............CAG......TTC......TACCCC.........GCG...TCGCCTGGAGGG
TRN  11111111111111111
NAM  O77375_PLAF7/2257-2270
ASQ  NA..N.NA.....Y..Y..SP...T.SPKN
DSQ  AATGCA......AAT...AATGCT...............TAT......TAT......TCACCA.........ACC...TCACCAAAAAAT
TRN  11111101111011001
NAM  O77375_PLAF7/2393-2406
ASQ  SG..V.VN.....A..H..QP...M.SPAY
DSQ  AGCGGT......GTA...GTGAAT...............GCA......CAT......CAGCCT.........ATG...TCACCTGCATAT
TRN  11111111111111101
NAM  Q9XZS1_DROGU/1620-1633
ASQ  AS..T.TP.....N..F..NP...Q.STGY
DSQ  GCCTCC......ACC...ACGCCC...............AAC......TTT......AATCCG.........CAG...TCTACGGGCTAC
TRN  11111111111111111
//