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PANDIT Protein and Associated NucleotideDomains with Inferred Trees

FAM  PF04800
PID  ETC_C1_NDUFA4
DES  ETC complex I subunit conserved region
IPR  IPR006885
ANO  6
ALN  114
AID  0.382452
APH  (((NUYM_NEUCR/114-215:0.68862,Q9FJW4_ARATH/52-154:0.59226):0.05928,(Q9N4L8_CAEEL/97-196:0.31443,NUYM_HUMAN/75-172:0.20283):0.16678):0.25029,O69244_BRAJA/32-139:0.88891,Q9A8G5_CAUCR/1-101:0.59874);
ATP  (((NUYM_NEUCR/114-215,Q9FJW4_ARATH/52-154),(Q9N4L8_CAEEL/97-196,NUYM_HUMAN/75-172)),O69244_BRAJA/32-139,Q9A8G5_CAUCR/1-101);
ATL  3.77492
DNO  6
DLN  342
DID  0.468552
DPH  (NUYM_NEUCR/114-215:0.38217,((Q9N4L8_CAEEL/97-196:0.32045,NUYM_HUMAN/75-172:0.25924):0.10694,Q9FJW4_ARATH/52-154:0.39150):0.16028,(O69244_BRAJA/32-139:0.78198,Q9A8G5_CAUCR/1-101:0.28994):0.17525);
DTP  (NUYM_NEUCR/114-215,((Q9N4L8_CAEEL/97-196,NUYM_HUMAN/75-172),Q9FJW4_ARATH/52-154),(O69244_BRAJA/32-139,Q9A8G5_CAUCR/1-101));
DTL  2.86775
RID  0.382452
RPH  (((NUYM_NEUCR/114-215:0.68862,Q9FJW4_ARATH/52-154:0.59226):0.05928,(Q9N4L8_CAEEL/97-196:0.31443,NUYM_HUMAN/75-172:0.20283):0.16678):0.25029,O69244_BRAJA/32-139:0.88891,Q9A8G5_CAUCR/1-101:0.59874);
RTP  (((NUYM_NEUCR/114-215,Q9FJW4_ARATH/52-154),(Q9N4L8_CAEEL/97-196,NUYM_HUMAN/75-172)),O69244_BRAJA/32-139,Q9A8G5_CAUCR/1-101);
RTL  3.77492
LNK  NUYM_HUMAN/75-172:O43181:AF020351
LNK  NUYM_NEUCR/114-215:P25711:X78082
LNK  O69244_BRAJA/32-139:O69244:AJ003064
LNK  Q9A8G5_CAUCR/1-101:Q9A8G5:AE005814
LNK  Q9FJW4_ARATH/52-154:Q9FJW4:AB013390
LNK  Q9N4L8_CAEEL/97-196:Q9N4L8:AC006834
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  Q9A8G5_CAUCR/1-101
ASQ  MLARIYRPAKNAMQSGKAKTKDWVLEFEPASA---RKPDPLMGWTTSSDMNG-..QIRLTFETRDEAVAYAQRHEIAFQLFEPKAPKRILKAYADN-------FAANRKQPWTH
DSQ  ATGCTGGCCCGCATCTATCGCCCCGCCAAGAACGCCATGCAGTCCGGCAAGGCCAAGACCAAGGACTGGGTGCTGGAGTTCGAGCCGGCGAGCGCG---------CGCAAGCCCGATCCGCTGATGGGCTGGACGACCTCCAGCGACATGAACGGT---......CAGATCCGCCTGACCTTCGAGACCCGCGACGAAGCGGTCGCCTATGCTCAGCGCCACGAGATCGCCTTTCAGCTCTTTGAGCCCAAGGCGCCCAAGCGCATCCTCAAGGCCTACGCCGACAAT---------------------TTCGCGGCCAATCGCAAGCAGCCCTGGACTCAC
TRN  11011111101111111
NAM  NUYM_NEUCR/114-215
ASQ  RTVRIYLPSKPATQSSNSRV-LWRMDWD-VLEKGHRWENELMGWQSSGDFVQ-..GTHLTFRTKEEAIQFAEKQGYEYFVQEPNQRHFTPKAYANN-------FLYSPKKLKIV
DSQ  CGCACTGTTCGCATCTACCTTCCTTCCAAACCCGCCACCCAATCCTCCAACAGCCGCGTC---CTCTGGCGCATGGACTGGGAC---GTGCTCGAAAAGGGCCACCGCTGGGAAAACGAGCTGATGGGCTGGCAATCGTCGGGCGACTTTGTGCAG---......GGCACGCACCTGACCTTCCGCACCAAGGAGGAGGCCATTCAGTTTGCCGAGAAGCAAGGGTACGAGTACTTTGTGCAGGAGCCGAACCAGCGCCACTTTACGCCCAAGGCGTACGCCAACAAC---------------------TTTTTGTATAGCCCCAAGAAGTTGAAGATTGTC
TRN  11011101101011011
NAM  Q9FJW4_ARATH/52-154
ASQ  RKVIIYSPARTATQSGSGKLGKWKINFV-STL---KWENPLMGWTSTGDPYANvgDSALAFDSEEAAKSFAERHGWDYKVKKPNTPLLKVKSYSDN-------FKWKGNPQPEN
DSQ  CGCAAGGTGATAATATACTCACCTGCTAGAACAGCTACCCAGTCAGGATCTGGAAAACTCGGAAAATGGAAGATTAACTTCGTC---TCCACCTTA---------AAGTGGGAGAATCCGTTGATGGGATGGACTTCTACAGGTGACCCCTATGCTAATgttggtGACTCTGCTCTTGCTTTTGATTCTGAAGAAGCTGCTAAGTCTTTTGCTGAGCGTCATGGTTGGGATTATAAGGTCAAGAAGCCCAACACACCATTATTGAAGGTCAAGTCTTACTCGGACAAC---------------------TTCAAGTGGAAAGGCAATCCTCAACCAGAAAAC
TRN  10010101110011000
NAM  NUYM_HUMAN/75-172
ASQ  RKVRIFVPARNNMQSGVNNTKKWKMEFD-TRE---RWENPLMGWASTADPLSN..-MVLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGAN-------FSWNKRTR--V
DSQ  AGAAAAGTCAGGATCTTTGTTCCTGCTCGCAATAACATGCAGTCTGGAGTAAACAACACAAAGAAATGGAAGATGGAGTTTGAT---ACCAGGGAG---------CGATGGGAAAATCCTTTGATGGGTTGGGCATCAACGGCTGATCCCTTATCCAAC......---ATGGTTCTAACCTTCAGTACTAAAGAAGATGCAGTTTCCTTTGCAGAAAAAAATGGATGGAGCTATGACATTGAAGAGAGGAAGGTTCCAAAACCCAAGTCCAAGTCTTATGGTGCAAAC---------------------TTTTCTTGGAACAAAAGAACAAGA------GTA
TRN  10010101110011000
NAM  Q9N4L8_CAEEL/97-196
ASQ  RTARIFRPARETTQSAWGNTKSWTIELD-NRQ---RWENPLMGWSGTADPLSN.vGMDLKFATKEDAIAFCEKNRWEFDVEEPHERKIKPKNYGQN-------FSWNRRTR--I
DSQ  CGTACCGCTCGCATCTTCCGTCCAGCAAGAGAGACTACACAAAGTGCTTGGGGTAATACCAAGTCCTGGACCATTGAGCTGGAT---AATCGTCAA---------AGATGGGAAAATCCATTGATGGGATGGTCTGGAACTGCGGATCCACTCTCCAAT...gttGGAATGGATCTCAAGTTTGCCACAAAAGAGGACGCTATCGCTTTCTGTGAAAAGAATCGCTGGGAGTTTGACGTCGAGGAGCCACATGAGCGCAAGATTAAGCCAAAGAATTACGGACAAAAC---------------------TTCTCATGGAACAGAAGAACCAGA------ATT
TRN  10010101100011001
NAM  O69244_BRAJA/32-139
ASQ  AQAVIYKPTPSPMTSGRARAQRWTLRFERRS---APYIEPLMGWTGDDDPLSQ..-VELSFPSAEAAIAYARRQGLQYSVEGLPAQGAKPRLISDNPDVEGPAASQQRRRRLEW
DSQ  GCGCAGGCCGTGATCTACAAGCCTACCCCCTCGCCGATGACTTCGGGACGTGCGCGCGCCCAGCGCTGGACGCTGCGTTTCGAGCGCCGCTCG---------GCCCCGTACATCGAACCCCTGATGGGTTGGACCGGCGACGACGATCCCCTCTCGCAG......---GTCGAACTTTCGTTCCCGTCCGCCGAAGCCGCCATCGCATATGCGCGCCGCCAAGGTCTGCAATACTCAGTGGAGGGCTTGCCGGCGCAGGGGGCGAAGCCGCGCCTGATTTCGGACAATCCCGACGTTGAGGGCCCAGCCGCCAGCCAGCAGCGCCGCCGGCGGCTGGAATGG
TRN  11011111101111101
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