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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF04731 - Caudal_act)
FAM  PF04731
PID  Caudal_act
DES  Caudal like protein activation region
IPR  IPR006820
ANO  9
ALN  196
AID  0.415339
APH  ((HMD1_CHICK/1-132:0.14020,Q91622_XENLA/13-142:0.25513):0.18291,CDX1_MOUSE/13-147:0.60556,(((Q91542_XENLA/16-147:0.75203,(CDX4_MOUSE/13-169:0.10939,CDX4_HUMAN/13-171:0.19585):0.59527):0.14838,Q90262_BRARE/13-147:0.25945):0.15852,(CDX2_HUMAN/13-180:0.08282,P79788_CHICK/13-172:0.36415):0.43312):0.14219);
ATP  ((HMD1_CHICK/1-132,Q91622_XENLA/13-142),CDX1_MOUSE/13-147,(((Q91542_XENLA/16-147,(CDX4_MOUSE/13-169,CDX4_HUMAN/13-171)),Q90262_BRARE/13-147),(CDX2_HUMAN/13-180,P79788_CHICK/13-172)));
ATL  4.42497
DNO  8
DLN  588
DID  0.515738
DPH  (Q90262_BRARE/13-147:0.24903,((CDX2_HUMAN/13-180:0.10644,P79788_CHICK/13-172:0.22900):0.36587,(HMD1_CHICK/1-132:0.23408,Q91622_XENLA/13-142:0.19721):0.15813):0.09065,(Q91542_XENLA/16-147:0.48258,(CDX4_MOUSE/13-169:0.10413,CDX4_HUMAN/13-171:0.16631):0.38059):0.14965);
DTP  (Q90262_BRARE/13-147,((CDX2_HUMAN/13-180,P79788_CHICK/13-172),(HMD1_CHICK/1-132,Q91622_XENLA/13-142)),(Q91542_XENLA/16-147,(CDX4_MOUSE/13-169,CDX4_HUMAN/13-171)));
DTL  2.91367
RID  0.41937
RPH  (((((CDX2_HUMAN/13-180:0.04758,P79788_CHICK/13-172:0.40412):0.47781,(HMD1_CHICK/1-132:0.17741,Q91622_XENLA/13-142:0.22360):0.26436):0.07456,Q91542_XENLA/16-147:0.84358):0.10099,Q90262_BRARE/13-147:0.25366):0.69952,CDX4_MOUSE/13-169:0.10102,CDX4_HUMAN/13-171:0.20655);
RTP  (((((CDX2_HUMAN/13-180,P79788_CHICK/13-172),(HMD1_CHICK/1-132,Q91622_XENLA/13-142)),Q91542_XENLA/16-147),Q90262_BRARE/13-147),CDX4_MOUSE/13-169,CDX4_HUMAN/13-171);
RTL  3.87478
LNK  CDX1_MOUSE/13-147:P18111:
LNK  CDX2_HUMAN/13-180:Q99626:Y13709
LNK  CDX4_HUMAN/13-171:O14627:AF003530
LNK  CDX4_MOUSE/13-169:Q07424:L08061
LNK  HMD1_CHICK/1-132:P46692:X57760
LNK  P79788_CHICK/13-172:P79788:U80614
LNK  Q90262_BRARE/13-147:Q90262:X66958
LNK  Q91542_XENLA/16-147:Q91542:U02034
LNK  Q91622_XENLA/13-142:Q91622:U04302
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  Q91622_XENLA/13-142
ASQ  MY-PNPVRHPG--------------LNLNPQNYV-----PAPPQYSDFPSYHHVPGI....-NSDPHHGQPG----GTWSS-Y-TPSREDW.HPYGPGPGASSANPTQIA--------.---FSPSDYNPVQPP------------.-GSGLL--------PPSINSSVPPLSPSAQRADPYEWMRRTGVPTTTTT
DSQ  ATGTAC---CCCAATCCTGTTAGGCACCCTGGC------------------------------------------CTCAATTTGAATCCTCAGAACTATGTA---------------CCTGCGCCCCCTCAGTATTCTGATTTCCCCAGCTATCATCATGTCCCTGGGATT............---AACAGTGATCCACACCATGGGCAGCCTGGT------------GGCACCTGGAGCTCT---TAT---ACCCCCAGCAGAGAAGACTGG...CACCCCTATGGACCAGGACCTGGAGCTTCTTCAGCTAACCCAACACAGATCGCT------------------------...---------TTCAGTCCTTCTGACTATAACCCTGTGCAGCCACCG------------------------------------...---GGATCTGGACTTTTG------------------------CCGCCTTCTATAAATTCCTCTGTTCCCCCTCTGTCCCCCAGCGCACAAAGGGCAGATCCCTACGAATGGATGAGGCGCACAGGGGTCCCCACCACCACCACCACC
TRN  10010101100011001
NAM  HMD1_CHICK/1-132
ASQ  MY-PSPVRHPG--------------LNLNPQNYV-----PGPPQYSDFASYHHVPGI....-NNDPHHGQPA----AAWGSPY-TPAKEDW.HSYGT---AAASAATNPGQFGF----.----SPPDFNPMQPH------------.AGSGLL--------PPAISSSVPQLSPNAQRRTPYEWMRRSIPSTSSSG
DSQ  ATGTAT---CCCAGTCCCGTCCGGCATCCCGGC------------------------------------------CTCAACCTCAACCCCCAGAACTACGTG---------------CCGGGGCCACCCCAGTACTCGGACTTCGCCAGCTACCACCATGTGCCAGGGATT............---AACAACGACCCTCACCATGGGCAGCCCGCA------------GCCGCCTGGGGCTCACCCTAC---ACCCCTGCCAAGGAGGACTGG...CACTCATACGGCACC---------GCTGCCGCCTCCGCCGCCACCAACCCGGGGCAGTTTGGATTT------------...------------AGCCCCCCGGATTTTAACCCCATGCAGCCCCAT------------------------------------...GCGGGCTCTGGACTCCTG------------------------CCTCCAGCCATCAGCAGCTCGGTGCCACAGCTGTCCCCTAATGCACAGAGGCGCACCCCGTACGAATGGATGAGGCGCAGTATTCCCAGCACCAGCAGCAGCGGC
TRN  10010101100011001
NAM  Q90262_BRARE/13-147
ASQ  MYHQGAVRRSG--------------ISLPPQNFV------STPQYSDFTGYHHVP--....-NMET-HAQSA----GAWGAPYGAP-REDW.GAYSLGPP----NSISAPMSNSSPGP.VSYCSP-DYNTMHGP------------.-GSAVL-------PPPPENIPVAQLSPERERRNSYQWMSKTVQSSSTGK
DSQ  ATGTATCACCAAGGAGCGGTTCGTCGATCTGGC------------------------------------------ATCAGTCTTCCACCACAGAACTTTGTT------------------TCCACACCTCAGTATTCAGATTTTACAGGATACCATCATGTGCCC------............---AATATGGAGACA---CACGCACAGTCGGCA------------GGGGCATGGGGCGCTCCTTATGGCGCTCCG---AGAGAGGACTGG...GGCGCCTACAGCCTCGGACCTCCA------------AATTCTATTTCTGCACCTATGAGCAATTCATCTCCGGGACCA...GTTTCCTATTGCTCGCCC---GATTATAACACCATGCACGGCCCT------------------------------------...---GGATCGGCGGTTCTT---------------------CCTCCGCCACCTGAAAATATTCCTGTGGCCCAACTATCCCCAGAGAGAGAAAGGCGTAATTCCTATCAGTGGATGAGCAAAACCGTCCAGTCGTCATCAACCGGCAAA
TRN  10010101110011001
NAM  CDX1_MOUSE/13-147
ASQ  VY-PGPARPSS--------------LGLGPPTYAPPGPAPAPPQYPDFAGYTHV---....---EPA-PAPP----PTWAAPFPAP-KDDWaAAYGPGPTA------SAA----SPAP.LAFGPPPDFSPV--P--------APPG.PGPGIL--------AQSLGAPGAPSSPGAPRRTPYEWMRRSVAAAGGGG
NAM  P79788_CHICK/13-172
ASQ  MY-PGPVRHSGG-------------LNLAAQNFV------GAAQYADYGGYH-----....VNLDGA-QSPG----PVWAAPYAAPLRDDW.GAYGQGAPPPAAAAAVHGLNGGSPAAaMAYS-PVDFHHHHHHHPHAHHHVGPEThCSAGGMQTLGAAPAAAAASAAPEPLSPGGQRRGLCEWVRKPAQAPLGSQ
DSQ  ATGTAC---CCCGGCCCCGTTCGCCACTCGGGGGGG---------------------------------------CTCAACCTGGCGGCGCAGAACTTCGTG------------------GGCGCCGCGCAATACGCGGACTACGGCGGCTACCAT---------------............GTGAACCTCGACGGCGCG---CAGTCCCCCGGG------------CCGGTCTGGGCCGCGCCCTACGCCGCTCCTCTCCGCGACGACTGG...GGGGCCTACGGGCAGGGAGCCCCTCCGCCCGCCGCCGCCGCCGCCGTGCACGGTCTCAACGGCGGCTCCCCCGCCGCAgcgATGGCCTACAGC---CCCGTCGACTTCCACCACCACCACCACCACCACCCGCACGCCCACCACCACGTCGGTCCCGAGACGcacTGCTCCGCCGGGGGGATGCAGACTCTCGGTGCCGCCCCCGCCGCCGCCGCCGCCTCCGCCGCCCCCGAGCCGCTGTCCCCCGGCGGGCAGCGCCGCGGCCTCTGCGAGTGGGTGAGGAAACCGGCGCAGGCCCCGCTCGGTAGCCAA
TRN  10010101100011011
NAM  CDX2_HUMAN/13-180
ASQ  MY-PSSVRHSGG-------------LNLAPQNFV------SPPQYPDYGGYH-VAAAaaaaANLDSA-QSPG----PSWPAAYGAPLREDW.NGYAPGGAAAAANAVAHGLNGGSPAAaMGYSSPADYHPHHHPHHHPHHPAAAPS.CASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
DSQ  ATGTAC---CCTAGCTCCGTGCGCCACTCTGGCGGC---------------------------------------CTCAACCTGGCGCCGCAGAACTTCGTC------------------AGCCCCCCGCAGTACCCGGACTACGGCGGTTACCAC---GTGGCGGCCGCAgctgcagcggcaGCGAACTTGGACAGCGCG---CAGTCCCCGGGG------------CCATCCTGGCCGGCAGCGTATGGCGCCCCACTCCGGGAGGACTGG...AATGGCTACGCGCCCGGAGGCGCCGCGGCCGCCGCCAACGCCGTGGCTCACGGCCTCAACGGTGGCTCCCCGGCCGCAgccATGGGCTACAGCAGCCCCGCAGACTACCATCCGCACCACCACCCGCATCACCACCCGCACCACCCGGCCGCGGCGCCTTCC...TGCGCTTCTGGGCTGCTGCAAACGCTCAACCCCGGCCCTCCTGGGCCCGCCGCCACCGCTGCCGCCGAGCAGCTGTCTCCCGGCGGCCAGCGGCGGAACCTGTGCGAGTGGATGCGGAAGCCGGCGCAGCAGTCCCTCGGCAGCCAA
TRN  11011111101111111
NAM  CDX4_HUMAN/13-171
ASQ  MY-PGTLMSPGGDGTAGTGGTGGGGSPMPASNFA------AAPAFSHYMGYPHMP--....-SMDP-HWPSL----GVWGSPYSPP-REDW.SVY-PGPSSTMGTVPVNDVTS-SPAA.--FCS-TDYSNL-GPVGGGTSGSSLPGqAGGSLV---------PTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTR
DSQ  ATGTAC---CCGGGCACTCTCATGAGCCCTGGGGGCGACGGCACAGCTGGGACAGGCGGCACAGGGGGCGGTGGGAGTCCGATGCCAGCCTCCAATTTCGCT------------------GCGGCACCGGCTTTCTCGCACTATATGGGGTATCCTCATATGCCC------............---AGCATGGATCCT---CACTGGCCGTCTCTG------------GGAGTCTGGGGCTCACCCTACAGTCCCCCG---CGAGAAGACTGG...AGCGTGTAT---CCTGGGCCGTCTAGTACAATGGGCACAGTGCCGGTGAACGACGTGACCTCT---AGCCCCGCCGCT...------TTCTGCTCG---ACCGACTACAGCAACTTG---GGCCCTGTGGGCGGTGGAACTAGCGGCAGCAGCCTACCAGGCcagGCTGGCGGGTCGCTTGTC---------------------------CCGACGGACGCAGGCGCCGCCAAGGCCAGTTCCCCCAGCAGGAGCCGCCACAGCCCCTATGCATGGATGCGCAAGACGGTGCAGGTGACGGGGAAAACCAGG
TRN  10010101100011001
NAM  CDX4_MOUSE/13-169
ASQ  MY-PGTLRSPGGSSTAGVGTSGGSGSPLPASNFT------AAPVYPHYVGYPHM---....SNMDP-HGPSL----GAWSSPYSPP-REDW.STY-PGPPSTMGTVPMNDMT--SPV-.--FGSP-DYSTL-GPTSGASNGGSLPDaASESLVS---------LDSGTSGATSPSRSRHSPYAWMRKTVQVTGKTR
DSQ  ATGTAC---CCAGGCACTCTCAGGAGCCCTGGAGGAAGCAGTACAGCCGGAGTGGGCACCTCTGGGGGCAGTGGTAGTCCTCTGCCTGCCTCCAACTTTACT------------------GCAGCCCCAGTTTACCCACACTACGTGGGTTACCCTCATATG---------............TCCAACATGGATCCT---CACGGGCCTTCGCTG------------GGAGCCTGGAGCTCACCCTACAGTCCGCCC---CGGGAAGACTGG...AGTACATAC---CCTGGGCCGCCCAGTACAATGGGCACAGTGCCCATGAATGACATGACC------TCCCCAGTT---...------TTCGGATCCCCA---GACTACAGCACTCTG---GGCCCCACCAGCGGTGCAAGCAACGGCGGTAGCTTGCCAGACgcgGCCAGCGAGTCACTGGTTTCT---------------------------CTTGACTCCGGCACCTCAGGCGCCACTTCTCCCAGCAGGAGCCGTCACAGCCCCTACGCATGGATGCGCAAAACTGTGCAGGTGACGGGGAAAACCAGG
TRN  10010101100011001
NAM  Q91542_XENLA/16-147
ASQ  MY-PLSVRSTS--------------NNHTAQNYV------SNQPYFNYVAYHHVP--....-PMDDQ-GQPMEFGDSVWITEGGMELL--W.SWT-L-------TQIWHKSSDLSPNQ.FAYNS-SGYSSP-HP------------.SGTGILH--------SVDLTHAAANSPSALSQNSYEWMGKTVQSTSTGK
DSQ  ATGTAT---CCACTTTCTGTAAGATCCACCAGC------------------------------------------AATAACCACACAGCGCAGAACTACGTC------------------TCCAATCAACCTTATTTCAACTATGTGGCGTATCATCATGTTCCA------............---CCTATGGATGACCAA---GGGCAGCCTATGGAGTTTGGGGACTCAGTATGGATCACCGAGGGAGGAATGGAACTCTTA------TGG...AGCTGGACC---TTA---------------------ACACAAATATGGCACAAATCATCTGATTTATCACCTAACCAG...TTTGCTTATAATTCC---TCTGGCTATAGCTCTCCT---CATCCA------------------------------------...TCTGGGACTGGGATTTTACAC------------------------TCTGTAGATTTGACTCATGCAGCTGCCAACTCACCCAGCGCTCTTAGTCAGAATTCTTACGAATGGATGGGGAAAACTGTGCAATCGACTTCTACAGGCAAG
TRN  10010101110011000
//