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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF04503 - SSDP)
FAM  PF04503
PID  SSDP
DES  Single-stranded DNA binding protein, SSDP
IPR  IPR007591
ANO  5
ALN  489
AID  0.268385
APH  ((Q9U291_CAEEL/91-234:1.71488,(LEUNG_ARATH/73-360:0.85157,O94619_SCHPO/157-606:1.02205):0.67446):0.72444,SSBP3_CHICK/80-302:0.31069,Q9BWW5_HUMAN/81-295:0.17637);
ATP  ((Q9U291_CAEEL/91-234,(LEUNG_ARATH/73-360,O94619_SCHPO/157-606)),SSBP3_CHICK/80-302,Q9BWW5_HUMAN/81-295);
ATL  5.47446
DNO  5
DLN  1467
DID  0.371873
DPH  ((Q9U291_CAEEL/91-234:0.65728,(LEUNG_ARATH/73-360:0.42293,O94619_SCHPO/157-606:0.87565):0.41561):0.57168,SSBP3_CHICK/80-302:0.21218,Q9BWW5_HUMAN/81-295:0.19456);
DTP  ((Q9U291_CAEEL/91-234,(LEUNG_ARATH/73-360,O94619_SCHPO/157-606)),SSBP3_CHICK/80-302,Q9BWW5_HUMAN/81-295);
DTL  3.3499
RID  0.268385
RPH  ((Q9U291_CAEEL/91-234:1.71488,(LEUNG_ARATH/73-360:0.85157,O94619_SCHPO/157-606:1.02205):0.67446):0.72444,SSBP3_CHICK/80-302:0.31069,Q9BWW5_HUMAN/81-295:0.17637);
RTP  ((Q9U291_CAEEL/91-234,(LEUNG_ARATH/73-360,O94619_SCHPO/157-606)),SSBP3_CHICK/80-302,Q9BWW5_HUMAN/81-295);
RTL  5.47446
LNK  LEUNG_ARATH/73-360:Q9FUY2:AF277458
LNK  O94619_SCHPO/157-606:O94619:AL035675
LNK  Q9BWW5_HUMAN/81-295:Q9BWW5:AY026292
LNK  Q9U291_CAEEL/91-234:Q9U291:AL117203
LNK  SSBP3_CHICK/80-302:Q98948:U68380
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NAM  O94619_SCHPO/157-606
ASQ  GSEPAKAYMSHISNLRKKSR.LNLQEIQKNSLHTGNTSHPYANASFPHDPANAMGQQIDSSQFHQGAGG--.--LNDRNQHLMRQ-----AMLNNQSRETFPPTAAQLQQLKQLHYRQLQSVQQQQKQHQQKKTPQSGSTPQMQNTTSQPTTHDTH---PPKQQGPISDFRSIPSSPKTEGAPSNAQFRPSLPATPNGSVPQSNPLYDTTGLNGGQYPVVQNSAQPLLHEINFASNRNPHLKQGGAVPSSTLPQQQKSLDKPKPAQQPSTGQFSGNQMNQYGFSNSPYSQNMLYNFNGNA------------------NPSRLNPALKNYMEELKLLEQQNKKRLLLVSQEKERKGYTSASPDRPLSQTITESSVAKTKSTTPKSTDTPTEATTSPVKVSTKNSNTTENLNGINESNMP------MLQNGLPLRTSGDHPSNYSNLIENSSTSDTNNADNGMDVMGNWQLQQTHSSRPT-PNASSPLDV
DSQ  GGATCTGAGCCGGCAAAGGCGTATATGTCTCATATTAGCAATCTTAGGAAGAAATCTCGT...TTAAATTTGCAAGAAATTCAAAAAAACTCTCTACACACTGGAAATACTTCTCACCCTTATGCAAACGCCTCATTTCCCCATGATCCTGCCAACGCAATGGGTCAGCAGATTGACTCATCTCAGTTTCATCAAGGGGCAGGTGGA------...------TTGAACGATAGAAATCAGCACTTAATGCGGCAA---------------GCTATGCTAAATAATCAAAGCCGTGAAACGTTTCCCCCGACCGCTGCTCAACTTCAACAATTAAAACAATTACACTACAGGCAGCTACAATCTGTGCAACAACAACAAAAGCAGCACCAGCAAAAGAAAACTCCACAAAGTGGTTCTACCCCACAAATGCAAAACACGACTTCTCAACCTACAACTCACGATACACAT---------CCACCTAAGCAGCAAGGTCCAATTTCCGATTTTCGATCCATCCCTTCTTCACCCAAAACAGAAGGTGCTCCATCTAATGCTCAATTTCGCCCTAGTTTACCGGCAACTCCTAATGGTTCCGTTCCCCAGTCGAATCCGTTGTACGATACCACTGGTCTTAACGGAGGACAATACCCTGTTGTTCAAAACTCTGCTCAACCATTGCTTCACGAGATAAATTTTGCTTCAAACAGAAATCCACATCTCAAACAAGGAGGAGCAGTACCTTCTTCTACCCTTCCTCAACAACAGAAATCTTTAGACAAACCTAAACCTGCTCAACAGCCTTCAACTGGGCAATTTTCTGGAAATCAAATGAACCAATACGGATTCTCTAATTCTCCTTACTCTCAAAATATGCTATATAATTTTAACGGAAACGCA------------------------------------------------------AACCCCAGTCGTCTAAACCCAGCTCTCAAGAATTATATGGAGGAGTTAAAGCTACTAGAACAACAGAATAAAAAGAGGCTTCTGTTAGTTAGTCAGGAAAAAGAAAGAAAAGGGTACACATCGGCATCGCCTGATAGACCGCTTTCTCAGACTATTACTGAATCTAGTGTTGCAAAAACCAAAAGCACTACTCCTAAATCTACTGACACTCCTACAGAAGCCACCACATCTCCTGTAAAGGTCTCAACAAAAAATAGTAATACTACTGAAAATCTTAATGGCATCAATGAGTCAAATATGCCT------------------ATGTTACAAAATGGTCTTCCTTTACGTACATCAGGTGATCATCCATCAAACTATTCTAATCTGATTGAAAACTCATCTACCTCTGACACAAATAATGCGGACAATGGAATGGACGTTATGGGGAATTGGCAATTACAACAAACTCATTCATCGCGACCCACT---CCAAATGCCAGTTCTCCATTGGACGTT
TRN  10010101100011000
NAM  LEUNG_ARATH/73-360
ASQ  ---EVAA--SYIETQMIKAReQQLQQSQHPQVSQQQQQQQ--------------QQQIQMQQL--------.--LLQRAQQQQQQ-----------------------QQQQHHHHQQQQQQQQQQQQQQQQQQQQHQNQPPSQQQQQQ-STPQ-HQQQPTPQQQPQRRDGSHLANGSANGLVGNNS-EPVMRQNPGSGSS---------------------------------------LASKAYEERVKMPTQRESLDE-------AAMKRFGD---NVGQLLDPSHASI----LKSAAASGQPAGQVLHSTSGGMSPQ-----------------------------------------------------------------------------VQTRNQQ----LPGSAVD-IK-SEINP-------VLTPRTAVP-EGSLI-GIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQSQS
DSQ  ---------GAGGTTGCTGCA------TCTTACATAGAGACACAGATGATCAAAGCACGAgaaCAGCAATTGCAGCAATCTCAACACCCACAAGTTTCACAGCAGCAGCAGCAACAACAA------------------------------------------CAACAGCAGATTCAAATGCAACAACTC------------------------...------TTGTTGCAACGTGCACAGCAACAGCAGCAGCAG---------------------------------------------------------------------CAACAACAACAACATCATCATCATCAGCAACAGCAACAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAACAACAACATCAAAACCAACCACCTTCTCAACAGCAGCAGCAGCAA---TCAACGCCTCAA---CACCAACAGCAGCCTACACCACAGCAGCAGCCTCAGAGAAGAGACGGGTCCCACCTTGCAAATGGATCAGCAAATGGACTCGTTGGTAATAACAGT---GAACCAGTTATGAGGCAAAATCCTGGGTCTGGGAGTTCC---------------------------------------------------------------------------------------------------------------------TTAGCTAGTAAAGCATATGAGGAGCGTGTAAAAATGCCTACTCAGAGGGAGTCCTTAGATGAG---------------------GCTGCTATGAAGCGATTTGGGGAC---------AATGTTGGACAACTGTTGGACCCAAGTCATGCATCAATA------------TTGAAATCTGCTGCAGCCTCTGGACAGCCTGCAGGGCAAGTGTTACACAGTACAAGTGGTGGTATGTCTCCACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAAACTCGAAATCAGCAA------------CTTCCTGGGTCTGCAGTGGAT---ATTAAA---AGTGAGATCAATCCC---------------------GTGCTCACTCCCAGAACTGCTGTTCCA---GAAGGATCGTTGATT---GGAATTCCTGGTTCAAATCAAGGCAGCAACAACCTTACACTTAAAGGGTGGCCACTCACTGGATTTGATCAGCTTCGTTCTGGTCTTCTTCAGCAGCAAAAACCATTTATGCAGTCTCAGTCT
TRN  10010101100011000
NAM  Q9U291_CAEEL/91-234
ASQ  GGDPFSA-------------.------------EAKYFHE-------------------------------.-----------------------------------------------------------------------AMIGMP---------------------------------PGMNG--HF--APPPMGME-----------------------------------------------------------------------MMGGHPGAFGGRFAPGRMP-------------PGAMAP-----GGMPPG---------------------------------------------------------------------------AFPMFPPDP---RLQRMAPN--QGMRMPP----------PPVGQPFPGAVGMPRPVGPGAPMVTYLKNRKIEDFSKTKSIHIFRKNNKIRSFL
DSQ  GGAGGCGATCCGTTCTCGGCG---------------------------------------...------------------------------------GAGGCTAAATATTTCCACGAG---------------------------------------------------------------------------------------------...---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGATGATCGGAATGCCA---------------------------------------------------------------------------------------------------CCAGGAATGAATGGA------CATTTT------GCTCCACCACCAATGGGAATGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGATGGGTGGTCATCCAGGAGCATTTGGCGGCCGATTTGCACCCGGACGAATGCCT---------------------------------------CCAGGCGCAATGGCACCT---------------GGAGGTATGCCTCCAGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTTCCCAATGTTTCCACCGGATCCA---------CGATTACAACGAATGGCGCCGAAT------CAAGGAATGCGAATGCCACCG------------------------------CCACCAGTTGGACAACCATTCCCTGGAGCTGTTGGAATGCCGAGGCCCGTTGGTCCCGGAGCACCGATGGTCACATATTTGAAAAATCGCAAAATTGAGGATTTTTCTAAAACAAAAAGTATTCACATTTTCCGAAAAAATAACAAAATCCGCAGTTTTCTT
TRN  10010101110011010
NAM  Q9BWW5_HUMAN/81-295
ASQ  C--EHSG-------------.------------EAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAGFFQ.PFMSPRFPGGPRP-----TLRMP-------------------------------------------SQPPAGLPGSQPLLPG-----------------AMEPSPRAQGHPSMGG--PMQRVTPPRGMA-----------------------------------------------------------------------SVGP--QSYGGGMRPPPNSL--------AGPGLPAMNM--------GPG---------------------------------------------------------------------------VRGPWASPSG-NSIPYSSSS--PGSYTGP----------PGGGGP-PGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAA
DSQ  TGC------GAGCACTCCGGC---------------------------------------...------------------------------------GAGGCCAAGGCCTTCCAGGACTATAGTGCTGCAGCCGCCCCCAGCCCCGTTATGGGGAGTATGGCCCCAGGTGACACAATGGCCGCAGGCTCCATGGCGGCTGGCTTCTTCCAG...CCCTTCATGTCACCGCGCTTCCCAGGGGGCCCCCGGCCC---------------ACCCTGCGGATGCCG---------------------------------------------------------------------------------------------------------------------------------AGTCAGCCTCCCGCAGGCCTCCCTGGCTCCCAGCCCCTCCTCCCTGGC---------------------------------------------------GCCATGGAGCCCTCCCCACGAGCCCAGGGGCATCCGAGCATGGGCGGC------CCAATGCAGAGGGTGACGCCTCCTCGTGGCATGGCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGTGGGGCCC------CAGAGCTATGGAGGTGGCATGCGACCCCCACCCAACTCCCTC------------------------GCCGGCCCAGGCCTGCCTGCCATGAACATG------------------------GGCCCAGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCGTGGCCCGTGGGCCAGCCCCAGTGGA---AACTCGATCCCCTACTCCTCCTCATCC------CCCGGCAGCTACACCGGACCC------------------------------CCAGGAGGAGGTGGGCCC---CCTGGAACACCCATCATGCCTAGCCCTGGAGATTCCACCAACTCCAGCGAAAACATGTACACTATCATGAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATTTCCCGCTCGGCCCTGGCCCGGAGGGCCCCATGGCCGCC
TRN  10010101100011001
NAM  SSBP3_CHICK/80-302
ASQ  C--EHSS-------------.------------EAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQgPPGSQPSPHAQPPPHNPNSMMGP------------------------------------------HSQPPGAVPGTQPLLPN------------------SMDPTRQQGHPNMGG--PMQRMNPPRGMG-----------------------------------------------------------------------PMGPGPQNYGSGMRPPPNSL---------GPGMPGINM--------GPG---------------------------------------------------------------------------AGRPWPNPSSANSIPYSSSS--PGTYVGP----------PGGGGP-PGTPIMPSPADSTNSSDNIYTMINPVPPAGSRSNFPMGPGSDGPMGG
DSQ  TGC------GAGCATTCGAGC---------------------------------------...------------------------------------GAAGCGAAAGCCTTCCATGACTATAGCGCAGCTGCCGCCCCGAGTCCCGTGCTTGGAAACATTCCCCCGAACGACGGGATGCCCGGGGGCCCCATCCCGCCAGGTTTCTTCCAGggaCCGCCTGGTTCACAGCCCTCGCCACACGCACAGCCTCCACCCCACAACCCTAACAGCATGATGGGACCC------------------------------------------------------------------------------------------------------------------------------CACAGTCAGCCTCCGGGGGCCGTCCCTGGTACACAGCCATTGCTGCCCAAT------------------------------------------------------TCGATGGATCCCACGCGACAGCAAGGGCACCCGAACATGGGCGGA------CCCATGCAAAGGATGAATCCTCCGCGAGGGATGGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATGGGTCCCGGTCCGCAGAACTATGGCAGCGGCATGAGACCTCCGCCCAACTCCTTA---------------------------GGCCCTGGCATGCCCGGAATTAACATG------------------------GGGCCGGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGCAGACCATGGCCCAACCCCAGCAGTGCTAACTCAATCCCATACTCTTCTTCATCG------CCTGGTACATATGTGGGTCCT------------------------------CCCGGCGGCGGCGGCCCT---CCGGGGACACCCATCATGCCCAGCCCTGCAGATTCAACAAATTCAAGTGACAACATCTACACAATGATTAATCCAGTACCGCCCGCAGGCAGTCGATCGAATTTCCCGATGGGCCCCGGCTCCGACGGCCCCATGGGTGGC
TRN  10010101100011000
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