pan•dit

PANDIT Protein and Associated NucleotideDomains with Inferred Trees

FAM  PF04466
PID  Terminase_3
DES  Phage terminase large subunit
IPR  IPR006701
ANO  11
ALN  500
AID  0.242311
APH  ((TERL_BPSPP/60-421:0.79273,((Y1410_HAEIN/1-373:0.15095,(Q9T1T0_BPAPS/39-438:0.74247,Q9AZ00_BPHK6/49-440:0.50904):0.20463):1.08131,(O50744_BORBU/54-386:1.16174,(Q9T1C1_BPA18/68-426:0.72739,O03927_9CAUD/73-430:0.82406):0.46589):0.14162):0.25772):0.22603,(Q9AZ91_9VIRU/66-414:0.78281,Q9A018_STRPY/62-418:0.90094):0.17322,(YQAT_BACSU/52-423:0.14849,XTMB_BACSU/53-424:0.14652):0.47572);
ATP  ((TERL_BPSPP/60-421,((Y1410_HAEIN/1-373,(Q9T1T0_BPAPS/39-438,Q9AZ00_BPHK6/49-440)),(O50744_BORBU/54-386,(Q9T1C1_BPA18/68-426,O03927_9CAUD/73-430)))),(Q9AZ91_9VIRU/66-414,Q9A018_STRPY/62-418),(YQAT_BACSU/52-423,XTMB_BACSU/53-424));
ATL  9.91328
DNO  11
DLN  1500
DID  0.389848
DPH  (Q9T1C1_BPA18/68-426:0.47178,((O50744_BORBU/54-386:0.76823,(Y1410_HAEIN/1-373:0.21789,(Q9AZ00_BPHK6/49-440:0.44744,Q9T1T0_BPAPS/39-438:0.54604):0.11642):0.44616):0.07776,(TERL_BPSPP/60-421:0.56303,((XTMB_BACSU/53-424:0.23923,YQAT_BACSU/52-423:0.17258):0.28517,(Q9AZ91_9VIRU/66-414:0.53220,Q9A018_STRPY/62-418:0.57462):0.11529):0.12950):0.10211):0.19365,O03927_9CAUD/73-430:0.61781);
DTP  (Q9T1C1_BPA18/68-426,((O50744_BORBU/54-386,(Y1410_HAEIN/1-373,(Q9AZ00_BPHK6/49-440,Q9T1T0_BPAPS/39-438))),(TERL_BPSPP/60-421,((XTMB_BACSU/53-424,YQAT_BACSU/52-423),(Q9AZ91_9VIRU/66-414,Q9A018_STRPY/62-418)))),O03927_9CAUD/73-430);
DTL  6.61691
RID  0.242311
RPH  ((TERL_BPSPP/60-421:0.79273,((Y1410_HAEIN/1-373:0.15095,(Q9T1T0_BPAPS/39-438:0.74247,Q9AZ00_BPHK6/49-440:0.50904):0.20463):1.08131,(O50744_BORBU/54-386:1.16174,(Q9T1C1_BPA18/68-426:0.72739,O03927_9CAUD/73-430:0.82406):0.46589):0.14162):0.25772):0.22603,(Q9AZ91_9VIRU/66-414:0.78281,Q9A018_STRPY/62-418:0.90094):0.17322,(YQAT_BACSU/52-423:0.14849,XTMB_BACSU/53-424:0.14652):0.47572);
RTP  ((TERL_BPSPP/60-421,((Y1410_HAEIN/1-373,(Q9T1T0_BPAPS/39-438,Q9AZ00_BPHK6/49-440)),(O50744_BORBU/54-386,(Q9T1C1_BPA18/68-426,O03927_9CAUD/73-430)))),(Q9AZ91_9VIRU/66-414,Q9A018_STRPY/62-418),(YQAT_BACSU/52-423,XTMB_BACSU/53-424));
RTL  9.91328
LNK  O03927_9CAUD/73-430:O03927:X98106
LNK  O50744_BORBU/54-386:O50744:AE000786
LNK  Q9A018_STRPY/62-418:Q9A018:AE006544
LNK  Q9AZ00_BPHK6/49-440:Q9AZ00:AF335538
LNK  Q9AZ91_9VIRU/66-414:Q9AZ91:AF195901
LNK  Q9T1C1_BPA18/68-426:Q9T1C1:AJ242593
LNK  Q9T1T0_BPAPS/39-438:Q9T1T0:AF157835
LNK  TERL_BPSPP/60-421:P54308:X56064
LNK  XTMB_BACSU/53-424:P39786:Z70177
LNK  Y1410_HAEIN/1-373:P44184:U32820
LNK  YQAT_BACSU/52-423:P45916:D32216
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DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx
NAM  O03927_9CAUD/73-430
ASQ  VLANKSDLH-DTVYNQIQWALSMLDMDNEFIAYKSPL.--TIQHK-RTGSSFYFYGAD-NPYKLKSNIVG----DVVA----VWYEEAANMK.SSDVFDQANPT.FIR-.-QKPEW...LD--QV-KVFY--SYNPP-KNPYD---WINEWIDK--V--SKDDN-----Y-LIDT-SDYR---CDVRGFTSKQTLDLIEQYKKNDY---EY-YRWLYLGEVIGLGT----SIYNPSLLKPLEVFPDDD-YIKSLYFSQD.SGQQVS---ATTELCIALTAKKR-VILLDTY---YYSPAHQ...SVKKPPSELADELYAFEDSREKQWHKKAWKR..SADEATSD-.-YAIDHEYFK............KYGR-.--HWH.HVNK----IE--............----KTAM-IDHVQDLLATGRFYYLDNKA--.NQ---------I--------..---FIDEHR--KYQWDGDT--.LESDK.PKVIK.VDDHTCD
DSQ  GTGCTGGCAAACAAGTCAGACTTACAT---GACACGGTTTACAACCAGATTCAATGGGCACTCAGCATGCTTGACATGGATAACGAGTTTATCGCTTATAAATCGCCACTC...------ACGATACAGCATAAG---CGAACTGGCAGCTCGTTCTACTTCTACGGCGCCGAC---AATCCATATAAGCTCAAGTCAAACATCGTAGGT------------GATGTAGTGGCT------------GTCTGGTACGAAGAAGCCGCCAACATGAAG...TCTAGTGACGTGTTCGATCAAGCTAACCCGACG...TTTATTCGT---...---CAGAAACCAGAATGG.........CTTGAT------CAGGTC---AAAGTGTTCTAC------TCATATAACCCACCT---AAGAACCCGTATGAC---------TGGATTAACGAGTGGATAGATAAA------GTG------TCAAAGGATGACAAC---------------TAT---CTGATTGACACG---AGCGATTATCGT---------TGTGACGTGCGTGGCTTTACCAGTAAGCAAACGCTTGACTTAATCGAGCAGTACAAGAAGAACGATTAC---------GAATAC---TATCGCTGGTTATATCTGGGAGAAGTTATTGGGTTAGGTACA------------AGTATCTATAATCCGAGCCTGTTAAAGCCGTTAGAGGTGTTCCCAGATGACGAC---TACATTAAGTCGTTATATTTCAGCCAAGAT...AGCGGCCAGCAGGTGTCA---------GCCACGACTGAGCTGTGCATAGCATTGACAGCTAAGAAGCGC---GTTATCTTACTAGATACTTAT---------TACTACTCACCAGCTCATCAG.........TCGGTTAAGAAGCCGCCTAGCGAGCTAGCAGACGAGCTGTACGCATTTGAGGATAGCCGTGAGAAGCAATGGCATAAGAAAGCGTGGAAGCGG......TCGGCCGATGAGGCGACGTCTGAC---...---TATGCTATTGACCATGAATACTTCAAA....................................AAGTATGGCAGA---...------CATTGGCAT...CATGTCAATAAG------------ATTGAA------....................................------------AAGACAGCGATG---ATTGATCACGTTCAGGACCTACTAGCCACTGGGCGTTTTTATTACCTCGATAACAAAGCA------...AACCAG---------------------------ATA------------------------......---------TTTATTGATGAACATCGC------AAGTATCAATGGGACGGTGACACG------...CTGGAAAGCGACAAG...CCAAAGGTTATCAAG...GTAGATGACCATACATGCGAC
TRN  10010101100011000
NAM  Q9T1C1_BPA18/68-426
ASQ  CLRKVANTLYKSVYQQIKWALYEMGVADQFKFGKSPM.--EIVHK-TWGTGFYFSGCD-DPAKLKS--MKIPVGYVSG----LWFEELAEFSgVTD-IDVVEDT.FIR-.----EDlpqGQ--EV-TIYM--SFNPPR----N-----PYEWVNEYV--DSKRS--DDDY-LIH-HTTYL---DDEKGFLSKQIIKKIEKYKKNDL---DY-YRWMYLGEVIGLGDNVYNM----NLFQPLKAIPADDRLILIDFAIDT.GHQVSATTYLSFGLTAKRNVILL--------------NTYY...YSPAN-QVVKKA--PSEYSKELRDFMTKVV-..-GNYN-TN-.-VDMQTVDSA............EGGL-.--RNQ.YYKD----YG--............----VSLHPVAKGKKVDMID---FVCDLL--.AQGRFY----YL----DIPE..NQIFIEEHR----KYQWDV-K.TINTDkPEVVK.EDDHTCD
DSQ  TGCCTGCGTAAAGTAGCAAATACGCTCTATAAGTCAGTGTATCAGCAAATCAAATGGGCTTTGTATGAAATGGGTGTTGCTGACCAATTTAAATTTGGTAAGTCGCCAATG...------GAAATTGTCCACAAA---ACTTGGGGGACAGGCTTCTATTTCTCTGGTTGTGAT---GATCCCGCTAAACTAAAATCG------ATGAAAATTCCAGTCGGCTATGTTAGCGGT------------TTGTGGTTTGAGGAATTAGCGGAATTTTCCggtGTAACTGAT---ATTGACGTTGTAGAAGATACA...TTCATTCGT---...------------GAAGATttgccacaaGGACAA------GAAGTT---ACAATATACATG------TCATTTAACCCGCCTCGC------------AAT---------------CCATATGAATGGGTGAATGAATATGTA------GATAGTAAACGTAGT------GACGATGATTAC---TTAATACAT---CACACTACTTATTTG---------GATGATGAAAAAGGCTTTTTATCTAAACAAATCATTAAGAAAATTGAGAAGTACAAAAAGAATGACCTC---------GATTAT---TACCGCTGGATGTATTTAGGCGAGGTAATTGGTCTTGGTGATAATGTTTATAACATG------------AACCTGTTTCAGCCGCTTAAAGCTATTCCTGCGGATGACAGGCTTATTTTAATTGACTTTGCTATTGATACA...GGACATCAAGTGTCAGCCACAACATATCTAAGTTTTGGTCTCACTGCAAAAAGAAATGTTATTTTGCTT------------------------------------------AACACATACTAT.........TATAGTCCTGCTAAT---CAAGTTGTTAAAAAAGCA------CCTAGCGAGTATTCAAAGGAGTTGCGAGATTTTATGACTAAAGTAGTT---......---GGAAACTACAAT---ACAAAT---...---GTTGATATGCAAACAGTAGATAGCGCA....................................GAGGGGGGGCTT---...------CGCAATCAA...TATTATAAAGAT------------TACGGC------....................................------------GTTAGCTTACACCCCGTCGCAAAAGGTAAAAAAGTGGATATGATTGAC---------TTTGTGTGTGATTTACTC------...GCGCAAGGTCGTTTTTAT------------TATCTT------------GATATTCCGGAA......AATCAAATATTCATCGAGGAACATAGA------------AAGTATCAATGGGATGTT---AAA...ACAATCAACACAGACaagCCCGAAGTCGTCAAA...GAAGACGATCATACGTGTGAT
TRN  10010101100011000
NAM  O50744_BORBU/54-386
ASQ  AIRKKKNKTTQSIHKEILELLSIYNLRKFFNISKAKIeSKSLIFG-K-KRAFVFEGGH-DTRDLKS--YA----HFKD----LWLEEANQFS.ADD-IEMLVPT.-MR-.----E-...-Q--GG-RIYM--SSNPVP----K-----SHWLYKRYL--SNQDN--PAVC-IIKS--TYR-----DNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGEEFDFGT----A----RLIKKFNVCGPEI-LSRANGSYYT.GIHVKG------NRICFLEILVG---RIS------YLPVVI...ITNACSKVLLSK--TDYQS-EINKFKGVFV-..-LPTA--R-.-EELKY-VFS............RFGR-.--GTL.LAKK----RN--............---LYSLS-----DYLIPSN--LNVVNKP--.ET---T--DVIS----EFNE..TEYYYDESS------AEDS--.-EVTN.-FVMQ.KDLVYIP
DSQ  GCAATTAGAAAAAAGAAAAACAAAACAACACAATCAATACACAAAGAAATTTTAGAACTTTTAAGCATATACAACTTAAGAAAATTTTTCAATATAAGCAAAGCAAAAATTgaaAGTAAGAGTTTGATTTTTGGG---AAA---AAACGTGCTTTTGTTTTTGAAGGGGGGCAT---GATACAAGAGATTTAAAATCT------TATGCG------------CATTTTAAGGAC------------TTATGGCTGGAAGAAGCCAATCAGTTTAGC...GCTGATGAT---ATAGAAATGCTTGTCCCTACA...---ATGAGA---...------------GAA---.........---CAA------GGCGGC---AGAATCTATATG------TCAAGCAATCCGGTGCCT------------AAA---------------TCACATTGGCTATACAAAAGGTACTTA------TCAAATCAAGACAAT------CCTGCTGTGTGT---ATAATCAAAAGC------ACTTACCGT---------------GACAACCCATTTTTAAATGGTGGAGACGTACAAGCTTGGCTTGAAAAACAAAGACTTGCATATCATGGCAATGACATTGGTTTTAGAATTGAGGTTTTAGGAGAAGAGTTTGATTTTGGTACA------------GCA------------AGGCTAATTAAAAAATTTAATGTGTGTGGTCCCGAAATT---CTTTCCAGAGCTAATGGAAGCTATTATACA...GGAATACACGTTAAAGGC------------------AACAGAATTTGTTTTTTAGAAATTCTTGTTGGA---------AGAATTTCC------------------TATCTTCCAGTTGTAATT.........ATTACAAACGCATGTAGTAAAGTTTTACTATCAAAA------ACTGATTACCAATCC---GAAATTAATAAATTTAAAGGGGTTTTTGTA---......---TTGCCAACAGCA------AGA---...---GAAGAACTCAAATAT---GTATTTTCT....................................CGTTTTGGTAGA---...------GGTACTTTG...CTTGCAAAAAAA------------CGAAAC------....................................---------TTGTATTCACTCTCA---------------GACTATTTGATTCCGTCTAAT------CTTAATGTGGTAAACAAACCC------...GAAACC---------ACT------GATGTAATTTCA------------GAGTTCAACGAA......ACTGAATATTATTATGATGAATCTAGT------------------GCAGAAGATAGC------...---GAAGTTACAAAT...---TTTGTTATGCAA...AAAGATTTGGTATACATCCCG
TRN  10010101100011000
NAM  TERL_BPSPP/60-421
ASQ  VIRRVYNTVEQSVFEQLKEAIDMLEVGHLWKVSKSPL.--RLTYIPR-GNSIIFRGGD-DVQKIKS--IK----ASKFPVAGMWIEELAEFK.TEE-EVSVIEKsVLR-.---AE-...-LPPGC-RYIFFYSYNPP---KRK-----QSWVNK--V--FNSSF-LPANT-FVDHSTYLQ------NPFLSKAFIEEAEEVKRR----NELKYRHEYLGEALGSGV----V--------PFENLQIEE-GIITDAEVARfDNIRQG---LDFGYGPDPLAFVR--WHYDKR--KNRIYAID...ELVDH-KVSLKR--TADFVRKNKYESARII-..-ADSS-EP-.-RSIDA-LKL............EHGI-.--NRIeGAKKGPDSVEHG............ERWLDELD-----AIVIDPLRTPNIAREF--.EN-IDYQTDKNG---DPIPR..LE-DKDNHTIDATRYAFER--.-----.--DMK.KGGVSLW
DSQ  GTCATCAGGCGAGTGTACAACACCGTTGAACAATCAGTATTCGAACAGCTCAAAGAGGCAATCGACATGCTGGAAGTAGGCCACCTCTGGAAAGTGAGTAAGTCGCCGCTC...------AGGCTGACATACATACCTAGA---GGAAACAGCATTATTTTCCGTGGTGGCGAC---GATGTACAAAAGATCAAGTCA------ATCAAA------------GCAAGCAAATTCCCTGTAGCTGGCATGTGGATTGAGGAGCTTGCCGAATTCAAG...ACTGAGGAA---GAAGTATCCGTAATTGAAAAGtcgGTTCTCCGT---...---------GCTGAA---.........---TTGCCGCCGGGATGC---CGCTATATTTTCTTTTACTCATACAACCCGCCG---------AAAAGAAAG---------------CAAAGTTGGGTGAATAAG------GTC------TTTAATTCGTCATTC---CTGCCCGCTAACACG---TTCGTAGACCACTCGACATACCTACAG------------------AACCCCTTCCTCTCAAAAGCGTTTATAGAGGAAGCTGAGGAGGTTAAACGGCGC------------AATGAATTGAAGTACCGACATGAGTACCTTGGAGAAGCACTCGGGAGCGGCGTT------------GTG------------------------CCATTTGAGAACCTACAGATCGAGGAA---GGTATCATAACAGATGCGGAAGTTGCCCGCttcGATAACATACGGCAGGGA---------TTGGACTTTGGTTATGGCCCTGACCCGCTTGCATTTGTACGC------TGGCATTACGATAAGCGC------AAGAATAGGATATACGCCATTGAT.........GAATTGGTTGATCAT---AAGGTGTCTCTGAAACGC------ACAGCGGATTTTGTGAGGAAGAATAAATACGAATCAGCCAGAATCATT---......---GCAGACAGCTCA---GAACCC---...---CGCTCAATCGACGCA---TTGAAGCTG....................................GAGCATGGCATA---...------AACCGCATTgagGGTGCGAAGAAAGGCCCTGACTCAGTAGAGCATGGG....................................GAAAGATGGTTGGATGAGCTGGAT---------------GCAATCGTTATAGACCCGCTCAGAACGCCGAATATTGCCCGTGAGTTT------...GAGAAC---ATAGATTATCAGACTGATAAGAACGGA---------GACCCTATTCCAAGG......CTTGAG---GACAAGGATAACCACACCATAGATGCCACACGGTACGCATTTGAGAGG------...---------------...------GACATGAAA...AAAGGAGGCGTTTCACTATGG
TRN  10010101100011001
NAM  XTMB_BACSU/53-424
ASQ  VIREVFDTHRDSTFALFQEVIEELGLTKAVASLSSPL.--QLRFH-N-GSRIMFKGMD-NPAKLKS--VH----NISL----IWIEECSEVK.YEG-FKELIGR.-LR-.--HPE-...-L--KL-HMIC--TTNPVGTSNWTYRHFFRDERKKRFV--LDDSELYEKRT-IVKGDTYYHHSTANDNLFLPESYVKQLDGLKEYDP---DL-YRIARKG-RFGVNG----I----RVLPQFEVLPHDQ-VKKCIAAISK.PIFRTG---MDFGFEESYNAVVR--LAVDPE--KKYLYIYW...EYYQN-KMTDDR--TAEELREFIETQELIK-..-ADSA-EP-.-KSIQY--FR............QQGF-.--RMV.GARK----FP-G............SRLQYTKK-VKRFKKIFCSDRCENVIYEL--.ET-LTYAKDKNG----ALIE..DEFTIDPHTLSAIWYALDD--.YEVA-.--DMK.ETAHKRM
DSQ  GTGATCCGGGAGGTGTTCGATACCCATCGGGATTCGACCTTCGCCTTGTTTCAAGAGGTGATCGAAGAGCTCGGTCTCACAAAGGCCGTGGCATCTCTTTCTTCCCCGCTG...------CAGCTGCGATTTCAC---AAT---GGCAGCCGGATCATGTTCAAAGGAATGGAC---AATCCGGCAAAATTAAAATCG------GTTCAT------------AACATTTCATTA------------ATATGGATTGAAGAGTGCTCAGAGGTGAAG...TATGAGGGG---TTCAAGGAGTTAATCGGACGT...---CTTCGC---...------CATCCTGAG---.........---CTA------AAGCTT---CATATGATCTGT------ACCACCAATCCCGTCGGCACCTCCAATTGGACGTATAGGCATTTTTTTCGGGATGAACGCAAGAAACGGTTTGTG------CTGGATGACAGCGAACTTTACGAAAAGCGGACG---ATTGTAAAGGGAGATACGTATTACCATCATTCCACCGCTAACGACAATCTTTTTCTCCCGGAAAGCTATGTGAAACAGCTTGACGGACTCAAAGAGTATGATCCC---------GACCTG---TACCGGATTGCCCGAAAAGGA---CGATTCGGCGTCAACGGG------------ATC------------AGGGTGCTGCCGCAGTTCGAGGTACTCCCGCATGATCAA---GTGAAAAAATGTATCGCAGCCATCAGCAAA...CCAATCTTTCGTACAGGT---------ATGGATTTTGGATTCGAGGAATCCTATAATGCCGTCGTCCGG------CTTGCTGTAGATCCTGAA------AAAAAATACCTCTACATTTATTGG.........GAGTATTATCAAAAT---AAAATGACAGATGATAGG------ACGGCTGAGGAGCTGCGTGAGTTTATTGAGACACAGGAATTGATCAAA---......---GCCGACTCGGCT---GAGCCG---...---AAAAGCATTCAATAT------TTCCGC....................................CAGCAGGGCTTT---...------CGGATGGTT...GGAGCCAGAAAG------------TTTCCC---GGC....................................TCCAGGCTTCAATATACCAAAAAG---GTAAAACGGTTCAAAAAAATCTTCTGTTCGGACCGCTGTGAAAATGTCATCTATGAGCTC------...GAGACA---CTTACGTATGCCAAAGATAAAAACGGA------------GCTCTGATTGAG......GATGAATTCACGATTGACCCGCATACGCTTTCTGCCATTTGGTATGCGCTTGATGAT------...TATGAGGTTGCT---...------GATATGAAA...GAGACAGCACACAAACGAATG
TRN  10010101100011000
NAM  YQAT_BACSU/52-423
ASQ  VIREVYDTHRDSTFSLFDELVSDLKLDHIVRCVSSPM.--QIRFS-N-GSRIIFKGMD-KPAKLKS--IN----NISL----IWIEECSEVK.YEG-FKELLGR.-LR-.--HPT-...-L--PL-HMIL--STNPVGEDNWTFKHFFKDDREKRFV--LDDKELYEKRI-IVSNDTYYHHSTADDNLFLPESYVQQLEELKEYDP---DL-YRIARKG-HFGVNG----I----RVLPQFEERPHEE-VMTAISNINR.PLKRVG---MDFGFVESYNAVVR--VAVDHE--KKYLYIYW...EYYKN-GLTDDK--TAEELKEFAETKELIK-..-ADSA-EP-.-KTIRY--FQ............QHGF-.--NMV.GARK----YQ-G............SRLQYTKK-IKRFRKIICSDRCENTIYEL--.KP-LAYATDKLG----NIIE..DEFTIDPHTLSAIWYALDD--.YEVT-.--DLK.EESKGRP
DSQ  GTTATCAGAGAAGTGTACGACACACATAGGGACTCAACATTTTCACTTTTTGATGAACTTGTAAGTGATCTAAAATTAGATCATATCGTTAGATGTGTATCTTCTCCGATG...------CAGATTCGATTTTCA---AAT---GGCAGCAGAATCATCTTTAAAGGGATGGAT---AAGCCAGCCAAACTGAAATCA------ATCAAT------------AATATTTCCCTC------------ATTTGGATTGAGGAATGCTCTGAAGTAAAA...TATGAGGGG---TTCAAGGAGCTTCTTGGACGT...---CTTCGT---...------CACCCGACA---.........---TTG------CCGCTT---CACATGATACTT------TCAACAAATCCAGTTGGAGAGGACAATTGGACTTTTAAGCATTTCTTCAAGGATGATAGGGAGAAGCGCTTTGTA------CTGGATGATAAGGAACTTTATGAAAAGCGGATA---ATCGTTAGCAACGACACCTATTATCATCACTCAACGGCAGATGATAATCTTTTCCTGCCAGAAAGCTATGTCCAGCAACTTGAAGAATTGAAGGAATACGATCCA---------GACCTT---TACCGAATTGCGCGGAAAGGT---CATTTTGGCGTGAATGGA------------ATT------------CGGGTTCTGCCGCAGTTTGAAGAGCGACCGCATGAAGAG---GTTATGACTGCAATCTCTAATATTAACCGC...CCGCTTAAACGGGTTGGC---------ATGGACTTTGGTTTTGTGGAATCGTATAACGCCGTCGTTAGG------GTTGCTGTGGATCATGAA------AAGAAATATCTCTATATCTACTGG.........GAGTATTACAAAAAT---GGATTAACGGATGATAAG------ACAGCCGAAGAACTTAAGGAATTTGCAGAGACTAAGGAATTAATCAAG---......---GCGGATTCAGCA---GAGCCA---...---AAGACAATCCGTTAT------TTTCAG....................................CAACACGGTTTC---...------AATATGGTG...GGTGCCCGTAAA------------TATCAA---GGA....................................TCACGCCTTCAGTATACAAAGAAA---ATCAAGCGGTTCAGGAAGATCATTTGCTCTGATCGTTGCGAGAACACGATTTATGAGCTT------...AAGCCG---CTTGCTTATGCTACCGATAAGCTGGGG------------AACATCATAGAA......GACGAGTTCACCATAGACCCGCATACACTGTCAGCTATCTGGTACGCTCTCGATGAT------...TATGAGGTAACC---...------GATTTGAAA...GAAGAATCAAAAGGAAGACCG
TRN  10010101100011000
NAM  Q9AZ91_9VIRU/66-414
ASQ  WLRKVDRTVKNSIFTDVTECLSGWNILQYCHVNRS--.DKTIVLP-N-GAIFLFQGMD-DPEKIKS--IK----GLSD----VVMEEASEFN.HND-YTQLTLR.-LR-.--EPK-...-H--KQRQIFC--MFNPVS----K-----LNWTYQTWFDPSADYD-RSRVA-IHQS--TYK-----DNRFLDEDNIRTIEELKNTNP---AY-YKIYTLG-EFATLD----K----LVFPYFETKRLNP-RDPKLLALN-.--DYFG---LDYGFINDPSAFMH--IKLDMR--NKTLYVMD...EFVKK-GLLNNQ--LAQVIKDMGYSKEVIT-..-ADSA-EK-.-KSIAE--MK............RDGI-.-YRIR.PALKGPDSIIQG............IQFLQQFK-------WVVDDRCVKTIEEL--.QN-YTYVKDKKT--------..DEYTNRPID--AYNHCIDAIR.YAVE-.----E.ENGHGST
DSQ  TGGCTACGTAAGGTTGATAGAACAGTTAAAAATTCAATTTTTACTGACGTAACTGAGTGTTTAAGTGGATGGAATATCCTTCAATACTGTCATGTAAATAGATCT------...GATAAAACAATCGTCCTTCCA---AAT---GGGGCGATTTTTTTATTTCAAGGTATGGAT---GATCCAGAAAAGATTAAATCC------ATTAAG------------GGGCTGTCTGAT------------GTGGTTATGGAAGAAGCAAGTGAATTTAAT...CATAATGAC---TACACTCAACTTACTTTGCGT...---TTGCGT---...------GAACCTAAG---.........---CAT------AAACAGCGACAAATTTTTTGT------ATGTTTAACCCAGTATCA------------AAA---------------CTCAATTGGACTTATCAGACTTGGTTTGATCCTAGTGCAGATTATGAT---CGGTCAAGAGTAGCT---ATCCATCAATCA------ACTTACAAA---------------GATAATAGATTTTTAGATGAAGACAATATTAGAACGATTGAAGAACTGAAAAATACTAATCCA---------GCTTAT---TACAAGATTTATACATTAGGT---GAGTTTGCAACATTAGAT------------AAA------------CTTGTTTTCCCTTACTTTGAAACTAAGCGACTTAATCCT---CGTGATCCTAAATTATTAGCGTTAAAT---...------GATTATTTTGGT---------CTTGATTATGGATTTATCAATGATCCAAGTGCTTTTATGCAT------ATCAAGCTAGATATGAGG------AATAAAACACTTTATGTGATGGAT.........GAATTTGTTAAAAAA---GGCTTGCTTAATAATCAG------CTAGCACAAGTAATTAAGGATATGGGCTATTCAAAAGAAGTAATAACA---......---GCTGATAGTGCT---GAAAAG---...---AAATCAATTGCTGAA------ATGAAA....................................AGAGACGGTATT---...---TATCGAATTAGA...CCAGCATTAAAAGGTCCTGATTCAATAATTCAAGGA....................................ATTCAATTTCTACAGCAATTTAAA---------------------TGGGTGGTTGATGATCGTTGCGTTAAGACAATTGAAGAATTG------...CAGAAT---TACACATACGTGAAAGATAAGAAGACC------------------------......GATGAATACACAAATAGGCCGATCGAT------GCATATAACCACTGTATTGATGCTATTCGT...TATGCGGTAGAG---...------------GAA...GAGAATGGTCATGGAAGTACG
TRN  10010101100011000
NAM  Q9A018_STRPY/62-418
ASQ  VIRRYSNTNKQSTYTDFKWACNQLKVTHLFKFNES-L.PEITVKA-T-GQKILFRGLD-DELKITS--ITVDVGALCW----AWFEEAYQIE.TEDKFSTVVES.-IRGsLDAPD-...-F--FK-QITV--TFNPWS----E-----RHWLKR--V--FFDEE--TKRADTFSGTTTFR-----VNEWLDDVDKRRYEDLYKTNP---RR-ARIVCDG-EWGVAE----G----LVFDNFEVVDF-D-VEKTIQRVKE.--TSAG---MDFGFTQDPTTLIC--VAVDLA--NKELWLYN...EHYQK-AMLTDH--IVKMIRDKNLHRSYIA-..-GDSA--E-.-KRLIAEIKS............KGVS-.--GIV.PSIK----GK-G............SIMQGIQF-MQGFKIYIHPS-CEHTIEEF--.NT-YTFKQDKEG----NWLN..EPIDKNNHVIDAIRYALEK--.YHIR-.-----.--SNESN
DSQ  GTCATCCGTAGATACTCAAACACTAACAAACAATCTACTTATACCGATTTTAAATGGGCGTGTAATCAATTAAAGGTTACACACCTTTTTAAGTTTAATGAGAGT---TTG...CCAGAAATAACTGTAAAGGCA---ACG---GGCCAAAAGATACTGTTCCGTGGACTTGAT---GATGAGTTAAAAATCACATCT------ATTACTGTCGATGTTGGCGCTTTGTGCTGG------------GCTTGGTTTGAAGAGGCTTATCAAATTGAG...ACCGAAGATAAGTTTTCAACAGTTGTCGAATCA...---ATCCGCGGTagtTTAGATGCTCCTGAT---.........---TTT------TTTAAA---CAGATAACAGTC------ACGTTTAACCCGTGGTCA------------GAA---------------AGACATTGGCTTAAACGT------GTC------TTTTTTGATGAAGAA------ACTAAACGGGCTGATACATTTTCTGGGACTACAACATTTAGA---------------GTAAACGAATGGCTTGATGATGTCGATAAAAGACGCTACGAAGATTTGTACAAGACTAATCCA---------AGGCGG---GCTAGAATCGTGTGCGATGGT---GAATGGGGCGTTGCTGAA------------GGT------------CTTGTTTTTGATAACTTTGAAGTCGTAGATTTT---GAT---GTTGAAAAAACAATTCAACGCGTTAAAGAG...------ACCTCGGCCGGT---------ATGGACTTTGGGTTTACTCAAGACCCTACAACTCTTATATGT------GTTGCAGTTGACCTCGCA------AACAAAGAGTTATGGCTTTACAAC.........GAACATTATCAAAAG---GCTATGTTAACAGATCAT------ATTGTCAAAATGATAAGAGATAAAAACTTGCATAGGTCTTACATCGCA---......---GGGGATAGCGCC------GAA---...---AAACGCCTCATTGCAGAAATAAAAAGT....................................AAAGGGGTGTCT---...------GGAATTGTC...CCGAGTATTAAA------------GGTAAA---GGG....................................TCAATCATGCAAGGGATTCAATTC---ATGCAGGGGTTTAAGATATATATTCACCCATCT---TGCGAACACACAATAGAAGAGTTT------...AATACT---TACACTTTTAAGCAAGACAAAGAAGGT------------AATTGGTTAAAC......GAACCGATAGATAAGAATAACCACGTTATTGATGCGATTAGATATGCGCTTGAAAAA------...TACCATATCAGA---...---------------...------AGCAACGAGTCAAAT
TRN  10010101100011000
NAM  Y1410_HAEIN/1-373
ASQ  MFREIQKSISDSVIQMLADQIEMLSLQAFFDVQKT--.--QIIGQ-N-GSRFTFAGLKTNITSIKS--MT----GIDV----VWVEEGENVS.KES-WDILIPT.-IR-.----E-...-D--GS-QIIV--SFNPK-----N----ILDDTYQRFV--IHPPE-RCKSV-LVN----WQ-----DNPYFPKELMEDMEQMRERDY---EL-YRHVYEGEPVADSD----L----AIIKPVWIEYAVD-AHLKLGFTAK.GMKKVGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDS...ANRTNQSAVKFK--ADLIIFDSIGVGAGVK-..-AHFKRLP-.-KSLQVEGFN............AGGA-.--VAY.PERE----YIKG............KKNQDMFSNIKAQSWWALRDRFYKTYRAV--.KYGDVYPDDELISLSSKIKE..LEYLKAELSRPRVDYDNNG-R.VKVES.KKDMK.KRGIPSP
DSQ  GTGTTCCGTGAAATTCAGAAATCGATTTCTGATTCTGTGATTCAGATGTTGGCAGATCAGATTGAAATGCTTAGCTTGCAAGCCTTTTTTGATGTTCAGAAAACG------...------CAAATTATCGGGCAA---AAC---GGTTCACGCTTCACGTTTGCGGGGCTGAAAACTAACATTACTTCGATTAAGTCG------ATGACA------------GGCATTGATGTA------------GTTTGGGTAGAAGAAGGCGAGAATGTTTCA...AAAGAAAGT---TGGGATATATTGATTCCAACC...---ATTCGT---...------------GAA---.........---GAC------GGTTCG---CAGATTATTGTG------AGCTTTAACCCGAAG---------------AAT------------ATTCTTGATGACACCTATCAACGTTTTGTG------ATTCATCCGCCTGAG---CGGTGTAAATCGGTC---TTAGTGAAT------------TGGCAA---------------GACAACCCATATTTTCCGAAAGAATTAATGGAAGATATGGAGCAGATGCGTGAGCGTGATTAC---------GAGCTT---TATCGTCACGTTTATGAGGGCGAGCCTGTTGCAGACAGTGAT------------TTG------------GCGATTATTAAGCCTGTATGGATTGAATATGCGGTAGAT---GCGCATCTCAAGCTCGGTTTTACCGCTAAA...GGAATGAAGAAAGTTGGCTTTGATGTGGCTGATGAGGGTGCGGATAGTAACGCTAATGCATTTGTTCACGGTTCTGTGGTGCTTGACATTGAAGTTTGGAAAAATGGCGATGTGATTGATTCC.........GCCAACCGAACAAATCAAAGTGCGGTCAAATTTAAA------GCTGATTTGATTATATTCGATAGTATTGGCGTGGGGGCGGGAGTAAAA---......---GCTCACTTTAAACGCTTGCCA---...---AAATCTTTACAAGTGGAAGGATTTAAT....................................GCTGGTGGTGCA---...------GTTGCTTAT...CCCGAGCGTGAA------------TATATCAAAGGA....................................AAAAAGAATCAAGATATGTTTTCGAACATTAAAGCCCAATCTTGGTGGGCGTTGAGAGATAGATTCTATAAAACCTATCGAGCAGTA------...AAGTATGGGGATGTTTATCCTGACGATGAACTGATAAGCCTATCGAGCAAAATCAAAGAG......CTTGAGTATTTGAAAGCAGAATTATCACGTCCTCGTGTTGATTATGACAATAACGGG---CGG...GTAAAGGTTGAAAGC...AAAAAGGATATGAAA...AAACGTGGCATACCTTCTCCA
TRN  10010101100011000
NAM  Q9AZ00_BPHK6/49-440
ASQ  CARELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMI.--RHLGT-N--AEFMFYGIKNNPTKIKS--LE----GIDI----CWVEEAEAVT.KES-WDILIPT.-IR-.----K-...-P--FS-EIWV--SFNPK-----N----ILDDTYQRFV--VNPPD---DIC-LLTV--NYT-----DNPHFPEVLRLEMEECKRRNP---TL-YRHIWLGEPVSASD----M----AIIKREWLEAATD-AHKKLGWKAK.GAVVSAHDPSDTGPDAKGYASRHGSVVKRIA---EGLLMDInegADWATSLAIEDG--ADHYLWDGDGVGAGLR-..-RQTT-EAFsGKKITATMFKgsespfdedapyQAGAWaDEVVQ.GDNV----RT--............--IGDVFRNKRAQFYYALADRLYLTYRAVVHgEY--ADPDDMLSFDKEAIGEniLEKLFAELTQIQRKFNNNG-K.LELMT.KVEMKqKLGIPSP
DSQ  TGCGCTCGTGAGCTGCAAAACAGTATCAGCGATTCGGTAATTCGGTTGCTTGAAGACACCATAGAGCGGGAAGGGTATTCGGCTGAGTTTGAAATTCAGCGTTCAATGATT...------CGTCATCTCGGAACG---AAT------GCTGAGTTCATGTTCTACGGCATCAAAAACAACCCGACGAAGATTAAATCG------CTCGAA------------GGCATTGATATC------------TGCTGGGTGGAGGAAGCGGAAGCGGTAACG...AAGGAATCA---TGGGATATCCTGATACCAACC...---ATCCGC---...------------AAG---.........---CCA------TTTTCC---GAAATATGGGTG------AGCTTTAACCCGAAA---------------AAC------------ATCCTCGACGATACCTATCAGCGATTCGTC------GTAAATCCTCCAGAT---------GATATTTGC---CTGCTGACGGTG------AACTACACC---------------GACAACCCGCACTTTCCTGAAGTTCTCCGTCTGGAGATGGAAGAGTGTAAACGCAGAAATCCG---------ACCCTG---TATCGTCACATCTGGCTTGGTGAGCCAGTGAGCGCAAGTGAT------------ATG------------GCAATCATCAAACGTGAATGGCTTGAAGCCGCAACCGAT---GCGCACAAGAAACTAGGATGGAAAGCGAAA...GGCGCTGTTGTTTCTGCACATGACCCGTCAGATACAGGGCCAGATGCTAAAGGTTATGCATCGCGTCACGGTTCGGTAGTTAAGCGCATTGCC---------GAAGGTCTGCTGATGGACATCaatgaaggtGCTGACTGGGCAACTTCGCTGGCTATTGAAGACGGC------GCTGACCACTATTTGTGGGATGGTGATGGTGTTGGTGCGGGGCTGCGC---......---AGACAGACAACG---GAAGCGTTCtcaGGTAAGAAAATCACCGCCACGATGTTCAAGggcagcgaatcgccattcgatgaagatgctccgtatCAGGCCGGAGCATGGgctGATGAAGTCGTACAG...GGTGACAACGTT------------CGCACT------....................................------ATTGGTGATGTGTTCCGCAATAAGCGAGCGCAATTCTATTACGCGCTGGCTGACAGGCTTTATCTGACATATCGGGCGGTTGTCCACggtGAGTAT------GCAGACCCCGACGACATGCTGAGTTTCGACAAAGAAGCGATAGGCGAGaatattCTGGAGAAGCTGTTTGCAGAACTGACGCAGATTCAGCGCAAATTCAATAACAACGGG---AAG...CTGGAGCTAATGACT...AAGGTCGAAATGAAGcagAAGCTCGGTATTCCATCTCCT
TRN  10010101100011001
NAM  Q9T1T0_BPAPS/39-438
ASQ  CLREFMNSIEDSGHAVLQAEVETLGLQNRFRILNT--.--YIEGI-N-DSIFKYGQLARNIASIKS--KH----DFDV----AWVEEAETVS.EKS-LDSLIPT.-IR-.----K-...-P--GS-ELWF--SFNPAEEDGAVYKRFVKPYKE---L--IDTQGYYEDDD-LYVGKVSYL-----DNPWLPAELKNDAQKMKRENY---KK-WRHVYGGECDANYE----D----ALIQPEWVEAAID-AHIKLGFKPS.GIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADA...TMTAFDDAFDYR--ADDFIYDNIGLGAGTVKthLRHSN-DG-.-NKMVVTGFG............AGDS-.--PDY.PDEI----YVPGngeylpssnnddRTHRDTFRNKRAQYWVYLADRFYKTWRAV--.EKGEYLDPDALISLSSKIAK..LSQLKSELIKQQRKRTPGN-RlIQLMS.KDEMR.LKGIKSP
DSQ  TGTTTACGTGAGTTTATGAATTCGATTGAAGATTCTGGCCATGCGGTATTGCAGGCCGAGGTAGAAACGTTGGGATTACAAAATCGGTTTCGTATTCTTAATACT------...------TACATTGAAGGCATC---AAT---GATTCCATTTTTAAATATGGCCAGTTGGCACGGAATATTGCGTCTATCAAATCC------AAACAT------------GATTTTGATGTT------------GCTTGGGTGGAAGAAGCGGAGACCGTATCT...GAGAAAAGT---CTGGATTCCCTTATTCCCACT...---ATTCGC---...------------AAG---.........---CCG------GGCTCT---GAGTTATGGTTT------TCTTTTAATCCAGCAGAAGAAGACGGTGCTGTATATAAGCGTTTTGTCAAGCCTTACAAGGAA---------CTA------ATTGATACTCAAGGATATTACGAAGACGATGAT---TTATATGTTGGTAAAGTGAGCTACCTG---------------GATAATCCCTGGTTACCGGCAGAGCTTAAAAATGATGCGCAGAAGATGAAACGGGAAAACTAT---------AAAAAA---TGGCGGCATGTTTACGGGGGCGAGTGTGATGCGAATTACGAG------------GAT------------GCATTAATTCAGCCTGAGTGGGTGGAGGCGGCGATTGAT---GCACATATCAAGTTAGGGTTTAAACCAAGC...GGAATTCGTGTTGTCACTTTCGACCCCGCTGATTCCGGTCAGGATGAAAAGGCATTATCCAAACGCTATGGCGTGCTGATTGAAGATTGCGTGAGCTGGTCAGAAGGTGATGTTGCTGATGCA.........ACGATGACCGCTTTTGATGACGCCTTTGACTATCGG------GCGGATGATTTTATCTATGACAACATTGGGTTAGGGGCCGGCACTGTCAAAacgcatCTAAGACACAGCAAT---GACGGT---...---AACAAGATGGTGGTGACGGGCTTTGGG....................................GCGGGCGATTCG---...------CCTGATTAT...CCTGATGAAATC------------TATGTGCCAGGCaatggtgagtaccttccttcctcaaataatgatgacAGAACTCACCGAGATACCTTTAGAAACAAACGCGCGCAATATTGGGTTTATTTAGCGGACCGATTTTATAAAACGTGGCGCGCCGTC------...GAAAAGGGCGAATATCTCGATCCGGATGCGTTGATCAGTCTCTCTTCGAAAATAGCGAAA......CTGTCACAACTCAAGTCAGAGCTGATTAAACAACAGCGTAAACGCACACCCGGAAAC---CGAttaATTCAGTTGATGAGC...AAAGATGAAATGCGA...TTAAAAGGAATAAAATCGCCC
TRN  10010101100011000
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