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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF04110 - APG12)
FAM  PF04110
PID  APG12
DES  Autophagy protein Apg12
IPR  IPR007242
ANO  6
ALN  107
AID  0.366094
APH  (Q9US24_SCHPO/36-132:0.48376,(Q9LVK3_ARATH/1-94:0.39728,((APGB_HUMAN/42-140:0.19362,APG12_DROME/19-106:0.57332):0.31596,Q10931_CAEEL/19-118:0.73198):0.27388):0.26192,APG12_YEAST/87-186:0.76099);
ATP  (Q9US24_SCHPO/36-132,(Q9LVK3_ARATH/1-94,((APGB_HUMAN/42-140,APG12_DROME/19-106),Q10931_CAEEL/19-118)),APG12_YEAST/87-186);
ATL  3.99271
DNO  6
DLN  321
DID  0.448691
DPH  ((Q9US24_SCHPO/36-132:0.46894,APG12_YEAST/87-186:0.56455):0.11787,Q9LVK3_ARATH/1-94:0.32298,(Q10931_CAEEL/19-118:0.59718,(APG12_DROME/19-106:0.42991,APGB_HUMAN/42-140:0.22722):0.13621):0.20265);
DTP  ((Q9US24_SCHPO/36-132,APG12_YEAST/87-186),Q9LVK3_ARATH/1-94,(Q10931_CAEEL/19-118,(APG12_DROME/19-106,APGB_HUMAN/42-140)));
DTL  3.06751
RID  0.366094
RPH  (Q9US24_SCHPO/36-132:0.48376,(Q9LVK3_ARATH/1-94:0.39728,((APGB_HUMAN/42-140:0.19362,APG12_DROME/19-106:0.57332):0.31596,Q10931_CAEEL/19-118:0.73198):0.27388):0.26192,APG12_YEAST/87-186:0.76099);
RTP  (Q9US24_SCHPO/36-132,(Q9LVK3_ARATH/1-94,((APGB_HUMAN/42-140,APG12_DROME/19-106),Q10931_CAEEL/19-118)),APG12_YEAST/87-186);
RTL  3.99271
LNK  APG12_DROME/19-106:Q9VTU1:AE003542
LNK  APG12_YEAST/87-186:P38316:AB017924
LNK  APGB_HUMAN/42-140:O94817:AB017507
LNK  Q10931_CAEEL/19-118:Q10931:U32305
LNK  Q9LVK3_ARATH/1-94:Q9LVK3:AB019229
LNK  Q9US24_SCHPO/36-132:Q9US24:AL136499
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  APG12_YEAST/87-186
ASQ  AQTSKQKSHKDEKNIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLK---MDHVYCYINNSFAPSPQQNIGELWMQFKTNDE----LIVSYCASVAFG
DSQ  GCACAAACAAGCAAACAAAAAAGCCATAAAGACGAAAAAAACATACAAAAGATACAGATAAAATTTCAGCCCATTGGTTCTATTGGGCAGTTAAAACCATCTGTTTGTAAAATATCAATGTCACAGTCTTTTGCAATGGTTATTTTATTTCTTAAGAGACGGCTGAAA---------ATGGACCATGTTTATTGTTATATAAATAATTCGTTTGCGCCAAGTCCGCAGCAAAATATTGGTGAACTTTGGATGCAATTCAAGACTAATGATGAG------------CTTATTGTAAGTTATTGTGCATCCGTAGCGTTTGGT
TRN  10010101100011000
NAM  Q9US24_SCHPO/36-132
ASQ  INTYREKENRR------VNLRFKAIGRTPLLRKTVFSINASQRFEKVTRFLKKELGLPMNSSLVLYVNSSFAPSPDEIVGNLYDNFAIDSH----LLINYCINVAFG
DSQ  ATCAACACATATAGAGAGAAAGAGAATCGAAGA------------------GTTAATTTACGATTTAAAGCAATTGGAAGAACACCCTTACTTCGAAAGACTGTTTTTTCAATCAATGCTAGTCAAAGATTCGAAAAAGTGACTCGGTTTTTAAAGAAAGAGCTTGGACTACCGATGAACTCTTCCTTGGTACTGTACGTTAATTCATCGTTTGCTCCTTCTCCTGATGAAATTGTGGGTAATCTATACGATAACTTTGCTATAGACAGTCAT------------CTACTTATTAATTATTGTATCAACGTTGCTTTCGGT
TRN  10010101100011000
NAM  Q9LVK3_ARATH/1-94
ASQ  MATESPNSVQK------IVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLH---SDSLFVYVNSAFSPNPDESVIDLYNNFGFDGK----LVVNYACSMAWG
DSQ  ATGGCGACCGAATCTCCGAATTCTGTTCAGAAA------------------ATTGTTGTTCATCTGCGAGCTACTGGTGGTGCTCCGATACTGAAACAATCTAAATTCAAGGTTTCAGGGAGTGACAAGTTTGCTAACGTGATTGATTTTCTAAGACGGCAGCTTCAC---------TCTGACTCATTGTTTGTTTATGTGAACAGCGCTTTCTCGCCAAACCCGGATGAATCAGTAATTGATCTATACAATAACTTTGGGTTTGATGGTAAA------------CTGGTGGTGAACTATGCTTGTTCCATGGCATGGGGT
TRN  10010101100011001
NAM  APGB_HUMAN/42-140
ASQ  PGTEEPAGDTKKK----IDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGK----LVLHYCKSQAWG
DSQ  CCGGGAACAGAGGAACCTGCTGGCGACACCAAGAAAAAA------------ATTGACATTTTGCTAAAGGCTGTGGGAGACACTCCTATTATGAAAACAAAGAAGTGGGCAGTAGAGCGAACACGAACCATCCAAGGACTCATTGACTTCATCAAAAAGTTTCTTAAACTTGTGGCCTCAGAACAGTTGTTTATTTATGTGAATCAGTCCTTTGCTCCTTCCCCAGACCAAGAAGTTGGAACTCTCTATGAGTGTTTTGGCAGTGATGGTAAA------------CTGGTTTTACATTACTGCAAGTCTCAGGCGTGGGGA
TRN  11011101101011000
NAM  APG12_DROME/19-106
ASQ  --SQRLASLS-------VCILLNATGNVPIIKKRTWTVDPNKTVGWIQTFIHKFLKLDASEQI------TFAPAPDQIIKNLYECHGTNGK----LVLYYCKNQAWG
DSQ  ------TCACAAAGACTTGCTTCATTATCA---------------------GTTTGTATCCTTCTGAACGCCACTGGCAATGTGCCCATCATCAAAAAGCGAACCTGGACCGTAGATCCCAACAAGACAGTCGGCTGGATACAGACGTTCATCCACAAGTTTCTGAAACTCGATGCCAGCGAGCAAATT------------------ACATTTGCACCTGCCCCGGATCAGATAATCAAGAACTTGTACGAGTGCCATGGAACCAATGGGAAA------------CTGGTGCTCTACTACTGCAAGAATCAGGCGTGGGGC
TRN  10010101100011000
NAM  Q10931_CAEEL/19-118
ASQ  ASAEPPKSDK-------VTVRLRNIADAPVLKNKKMVVNPTDTVASFILKLRKLLNIQANNSLFLYIDNTFAPSPDTTFETLSRCYSVKITDKEILELQYSITPAYG
DSQ  GCTTCCGCCGAACCACCAAAGTCAGATAAG---------------------GTGACCGTAAGGCTGAGGAATATCGCAGATGCGCCAGTTCTTAAAAATAAGAAAATGGTGGTGAATCCAACGGACACTGTTGCTTCCTTCATCTTGAAATTGCGAAAACTGCTGAATATTCAAGCCAACAACTCACTCTTCTTGTACATTGATAACACATTTGCCCCATCTCCTGACACCACGTTTGAGACGCTATCCCGATGTTATTCTGTGAAAATCACCGATAAGGAGATTCTGGAGCTTCAGTACAGCATTACACCGGCCTACGGA
TRN  10010101100011001
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