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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF03943 - TAP_C)
FAM  PF03943
PID  TAP_C
DES  TAP C-terminal domain
IPR  IPR005637
ANO  8
ALN  66
AID  0.394648
APH  ((((((Q99NI0_MOUSE/609-671:0.14731,Q99JG5_MOUSE/446-509:0.21614):0.11193,NXF2_HUMAN/561-624:0.02389):0.18566,NXF1_HUMAN/556-619:0.19744):0.15372,NXF1_DROME/607-672:0.62859):0.07334,NXF1_CAEEL/570-628:0.95813):0.54918,MEX67_YEAST/539-598:1.10050,MEX67_SCHPO/532-596:0.46362);
ATP  ((((((Q99NI0_MOUSE/609-671,Q99JG5_MOUSE/446-509),NXF2_HUMAN/561-624),NXF1_HUMAN/556-619),NXF1_DROME/607-672),NXF1_CAEEL/570-628),MEX67_YEAST/539-598,MEX67_SCHPO/532-596);
ATL  4.83901
DNO  8
DLN  198
DID  0.503789
DPH  ((((NXF2_HUMAN/561-624:0.04594,(Q99JG5_MOUSE/446-509:0.12038,Q99NI0_MOUSE/609-671:0.11258):0.10500):0.09058,NXF1_HUMAN/556-619:0.09162):0.32300,(NXF1_DROME/607-672:0.36142,NXF1_CAEEL/570-628:0.49278):0.13328):0.25935,MEX67_YEAST/539-598:0.59558,MEX67_SCHPO/532-596:0.47217);
DTP  ((((NXF2_HUMAN/561-624,(Q99JG5_MOUSE/446-509,Q99NI0_MOUSE/609-671)),NXF1_HUMAN/556-619),(NXF1_DROME/607-672,NXF1_CAEEL/570-628)),MEX67_YEAST/539-598,MEX67_SCHPO/532-596);
DTL  3.20368
RID  0.394648
RPH  ((((((Q99NI0_MOUSE/609-671:0.14731,Q99JG5_MOUSE/446-509:0.21614):0.11193,NXF2_HUMAN/561-624:0.02389):0.18566,NXF1_HUMAN/556-619:0.19744):0.15372,NXF1_DROME/607-672:0.62859):0.07334,NXF1_CAEEL/570-628:0.95813):0.54918,MEX67_YEAST/539-598:1.10050,MEX67_SCHPO/532-596:0.46362);
RTP  ((((((Q99NI0_MOUSE/609-671,Q99JG5_MOUSE/446-509),NXF2_HUMAN/561-624),NXF1_HUMAN/556-619),NXF1_DROME/607-672),NXF1_CAEEL/570-628),MEX67_YEAST/539-598,MEX67_SCHPO/532-596);
RTL  4.83901
LNK  MEX67_SCHPO/532-596:Q9Y8G3:AF055036
LNK  MEX67_YEAST/539-598:Q99257:X96770
LNK  NXF1_CAEEL/570-628:Q9XVS7:Z81035
LNK  NXF1_DROME/607-672:Q9U1H9:AJ251947
LNK  NXF1_HUMAN/556-619:Q9UBU9:AJ132712
LNK  NXF2_HUMAN/561-624:Q9GZY0:AJ277526
LNK  Q99JG5_MOUSE/446-509:Q99JG5:AJ305318
LNK  Q99NI0_MOUSE/609-671:Q99NI0:AY017476
AMK  ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  NXF1_CAEEL/570-628
ASQ  ..DGAPALPIR---EEMIKAMCQFSGMIPPFSEKCLADCAWNFDFACQKFNEIKSS--VPAEAFAH
DSQ  ......GACGGAGCACCTGCACTACCGATTCGT---------GAGGAAATGATCAAAGCGATGTGCCAGTTCAGTGGAATGATTCCACCATTCAGTGAGAAATGTCTTGCAGACTGCGCTTGGAACTTTGACTTCGCCTGTCAGAAGTTCAACGAAATAAAATCATCA------GTTCCAGCAGAAGCGTTTGCTCAT
TRN  10010101110011001
NAM  NXF1_DROME/607-672
ASQ  ttAVAPGAQDESTKMQMIEAMSAQSQMNVIWSRKCLEETNWDFNHAAFVFEKLFKENKIPPEAFMK
DSQ  acaacaGCAGTGGCACCTGGCGCCCAGGATGAGAGCACTAAAATGCAAATGATTGAAGCCATGAGCGCCCAAAGCCAAATGAATGTGATCTGGAGTCGGAAATGCCTGGAGGAAACGAATTGGGACTTTAACCATGCCGCCTTTGTGTTCGAGAAACTATTCAAGGAAAACAAAATACCGCCTGAGGCTTTTATGAAG
TRN  10010101100011011
NAM  NXF1_HUMAN/556-619
ASQ  ssSPVPTLSPE--QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFMK
DSQ  tcctccAGCCCGGTGCCCACCCTCTCTCCAGAG------CAGCAGGAAATGTTGCAAGCATTCTCTACCCAGTCTGGCATGAACCTCGAGTGGTCCCAGAAGTGCCTTCAGGACAACAACTGGGACTACACCAGATCTGCCCAGGCCTTCACTCATCTCAAGGCCAAGGGCGAGATCCCAGAAGTGGCATTCATGAAG
TRN  10010101110011011
NAM  NXF2_HUMAN/561-624
ASQ  ssSSEPSLSQE--QQEMVQAFSAQSGMKLEWSQKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAFKQ
DSQ  tcctccAGCTCTGAGCCCTCCCTCTCCCAGGAG------CAGCAGGAAATGGTGCAGGCTTTCTCTGCCCAGTCTGGGATGAAACTGGAGTGGTCTCAGAAGTGCCTTCAGGACAATGAGTGGAACTACACTAGAGCTGGCCAGGCCTTCACTATGCTCCAGACCGAGGGCAAGATCCCCGCAGAGGCCTTCAAGCAA
TRN  10010101100011011
NAM  Q99NI0_MOUSE/609-671
ASQ  dtSFKPLLSEE--QQEMVKSFSVQSGMKLDWSQKCLQDNEWDYTKAGEAFTALQNEGKIPKEFFK-
DSQ  gacacgTCATTCAAGCCTTTGCTCTCTGAAGAA------CAGCAGGAAATGGTGAAGTCTTTCTCTGTGCAGTCTGGAATGAAACTTGACTGGTCTCAGAAGTGCCTTCAAGATAACGAGTGGGACTACACCAAAGCTGGTGAGGCCTTCACTGCTCTCCAGAATGAGGGCAAGATCCCAAAGGAATTCTTCAAA---
TRN  11011101111011001
NAM  Q99JG5_MOUSE/446-509
ASQ  ysNFKLVLSQE--QQRMVQAFSTQSGMKLEWSQKCLEDNKWDYARAAEVFTMLQTKCKIPKEFFKQ
DSQ  tactccAACTTCAAGCTTGTCCTTTCTCAAGAG------CAGCAAAGAATGGTGCAGGCTTTCTCCACCCAGTCGGGGATGAAACTTGAATGGTCTCAGAAGTGCCTTGAAGATAACAAGTGGGACTATGCCAGAGCTGCTGAAGTCTTCACTATGCTTCAGACCAAGTGCAAGATCCCAAAGGAATTCTTCAAACAA
TRN  10010101110011011
NAM  MEX67_SCHPO/532-596
ASQ  ivQPRPEQAMLDTRQQIVLKIKAETGLNDYYAHMCCEQNNWDYNSALASFLELKSRNVIPAEAFS-
DSQ  attgtaCAGCCAAGACCGGAACAAGCAATGTTAGACACTAGACAACAAATTGTATTAAAAATTAAGGCGGAGACAGGTTTAAATGATTACTATGCTCACATGTGTTGTGAGCAAAATAATTGGGATTACAACAGCGCTCTAGCATCTTTTTTGGAATTAAAGTCGCGAAATGTTATACCAGCCGAAGCATTTTCA---
TRN  10010101110011000
NAM  MEX67_YEAST/539-598
ASQ  ..DVQSRLNPV--QLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQSSMNG--IPREAFVQ
DSQ  ......GATGTCCAGTCGCGGCTAAATCCCGTA------CAACTCGAGCTGCTGAATAAACTACATTTGGAAACGAAATTGAATGCAGAATACACGTTTATGTTGGCCGAGCAAAGTAACTGGAACTATGAAGTTGCCATAAAGGGTTTTCAGAGTAGCATGAATGGC------ATCCCTAGAGAAGCATTTGTGCAG
TRN  10010101100011011
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