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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF03870 - RNA_pol_Rpb8)
FAM  PF03870
PID  RNA_pol_Rpb8
DES  RNA polymerase Rpb8
IPR  IPR005570
ANO  7
ALN  152
AID  0.452566
APH  ((RPB8_SCHPO/8-125:0.46396,RPB8_YEAST/7-146:0.45706):0.19695,((RPB8_HUMAN/7-147:0.08229,(Q9VNZ3_DROME/7-146:0.13278,RPB8_CAEEL/7-145:0.36718):0.07452):0.29522,Q9M1A8_ARATH/9-145:0.50184):0.05088,Q40944_CHLS6/11-145:0.86433);
ATP  ((RPB8_SCHPO/8-125,RPB8_YEAST/7-146),((RPB8_HUMAN/7-147,(Q9VNZ3_DROME/7-146,RPB8_CAEEL/7-145)),Q9M1A8_ARATH/9-145),Q40944_CHLS6/11-145);
ATL  3.48701
DNO  6
DLN  456
DID  0.495342
DPH  ((((RPB8_YEAST/7-146:0.41886,RPB8_SCHPO/8-125:0.45572):0.08340,Q40944_CHLS6/11-145:0.62240):0.08933,Q9M1A8_ARATH/9-145:0.39415):0.18573,RPB8_HUMAN/7-147:0.16032,Q9VNZ3_DROME/7-146:0.25171);
DTP  ((((RPB8_YEAST/7-146,RPB8_SCHPO/8-125),Q40944_CHLS6/11-145),Q9M1A8_ARATH/9-145),RPB8_HUMAN/7-147,Q9VNZ3_DROME/7-146);
DTL  2.66162
RID  0.438577
RPH  ((((RPB8_YEAST/7-146:0.45767,RPB8_SCHPO/8-125:0.47230):0.20063,Q40944_CHLS6/11-145:0.87252):0.04813,Q9M1A8_ARATH/9-145:0.50304):0.30867,RPB8_HUMAN/7-147:0.06403,Q9VNZ3_DROME/7-146:0.21328);
RTP  ((((RPB8_YEAST/7-146,RPB8_SCHPO/8-125),Q40944_CHLS6/11-145),Q9M1A8_ARATH/9-145),RPB8_HUMAN/7-147,Q9VNZ3_DROME/7-146);
RTL  3.14028
LNK  Q40944_CHLS6/11-145:Q40944:U58510
LNK  Q9M1A8_ARATH/9-145:Q9M1A8:AL138659
LNK  Q9VNZ3_DROME/7-146:Q9VNZ3:AE003595
LNK  RPB8_CAEEL/7-145:Q19826:
LNK  RPB8_HUMAN/7-147:P52434:Z49199
LNK  RPB8_SCHPO/8-125:Q92399:D89595
LNK  RPB8_YEAST/7-146:P20436:X53289
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  Q40944_CHLS6/11-145
ASQ  NDIIKILSKDPDGKLYEKVSRIIAQSYYLN-MELWFDINSHLFPIYVGDSLNLSI--------YTISDE----SFNSTIKDNQFSYLVDKYEYFMIGKVFNII---TSIERET-SFNLIYASFGGLLLKLKVKKKYLKSFLPNSHLCLGLNR
DSQ  AACGATATTATCAAAATACTAAGTAAAGACCCTGATGGAAAGCTTTATGAGAAAGTTTCTAGAATTATTGCACAAAGTTATTATTTAAAC---ATGGAACTGTGGTTTGATATAAACTCTCATCTGTTTCCGATTTACGTTGGTGATTCATTAAACTTATCTATT------------------------TATACTATCAGCGATGAA------------TCATTCAATAGTACTATTAAAGATAATCAATTTAGTTACCTTGTTGATAAATATGAATATTTTATGATAGGCAAAGTCTTTAACATTATT---------ACTTCTATAGAAAGAGAAACT---TCTTTTAATTTAATTTATGCCTCTTTTGGTGGACTACTCTTAAAACTCAAAGTCAAAAAGAAATACTTAAAATCTTTTCTACCAAATAGTCATTTATGTTTAGGATTAAATCGA
TRN  10010101100011000
NAM  RPB8_SCHPO/8-125
ASQ  DEIFTVTSVDK--QKYQRVSRITAVSGQND-MNLTLDINSQIYPLEKDATFSLQITSNL--------NS--------------PD-LKEAADYIMYGKVYRVE--EAK---DE-KVS-VYVSFGGLLMAIEGSHRKLYRLSLDH-VYLLLRR
DSQ  GATGAGATTTTTACAGTCACTTCAGTTGATAAA------CAAAAGTATCAAAGAGTTTCACGAATTACGGCTGTCTCAGGCCAAAATGAC---ATGAATCTTACTCTTGACATTAATTCGCAAATTTATCCTTTAGAAAAGGATGCAACCTTTAGTTTGCAAATCACAAGCAATTTG------------------------AATAGC------------------------------------------CCTGAT---TTAAAGGAAGCTGCTGATTATATTATGTATGGAAAAGTCTATCGGGTGGAA------GAAGCTAAA---------GATGAG---AAAGTATCT---GTTTATGTAAGCTTTGGCGGTTTATTGATGGCAATTGAGGGCTCTCATAGAAAATTGTATCGTTTGTCATTAGACCAT---GTTTATCTATTACTTAGAAGG
TRN  10010101110011000
NAM  RPB8_YEAST/7-146
ASQ  DDIFQVSEVDP--GRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIASSLNLEDTPANDSSATRSWRPPQAGDR-S-LADDYDYVMYGTAYKFE--EVS---KD-LIA-VYYSFGGLLMRLEGNYRNLNNLKQEN-AYLLIRR
DSQ  GATGATATATTCCAAGTCTCGGAAGTTGATCCC------GGTCGTTATAACAAAGTCTGCCGTATCGAAGCCGCATCTACCACTCAGGACCAATGCAAACTAACCTTGGATATAAATGTTGAATTGTTTCCCGTCGCCGCACAAGATTCTTTGACAGTGACTATTGCATCCTCTTTAAACCTCGAAGACACCCCAGCTAACGACTCTTCTGCGACAAGAAGCTGGAGACCTCCACAGGCTGGTGACAGA---TCC---CTTGCAGATGATTATGATTACGTCATGTATGGTACCGCTTACAAGTTTGAG------GAAGTAAGC---------AAGGAT---CTAATTGCC---GTTTACTACTCATTCGGTGGCCTCTTAATGAGATTAGAAGGTAACTATAGAAATTTGAATAACTTGAAGCAAGAGAAC---GCTTATCTTTTGATTCGTCGT
TRN  10010101110011000
NAM  RPB8_CAEEL/7-145
ASQ  DDMFKVKSVDPDGKKFDRVSRYFCDAESFK-MELIIDINSQIYPLKQNDKVRLVLATTL-REDGLADEG----EYDP-KAEYP---RIKQYEYVMYGKVYRLEDDDTGTDG-G-KLA-AYASFGGLLMRLKGEAINLHGFEVDMNLYLLMKK
NAM  Q9VNZ3_DROME/7-146
ASQ  EDIFNVKDMDPEGKKFDRVSRLHCESESFK-MDLILDINSWLYPMELGDKFRLVLATTL-REDGCPDSG----EYNP--MEHEGT-RADSFEYVMYGKIYRIEGDEAH-NEAS-RLS-AYVSFGGLLMRLQGDANNLHGFEVDQHMYLLMKR
DSQ  GAGGACATCTTCAACGTAAAGGACATGGATCCGGAGGGCAAAAAGTTCGACCGTGTATCCCGCCTGCACTGCGAGTCCGAGTCGTTTAAG---ATGGACCTCATCCTGGACATCAACTCGTGGCTATACCCCATGGAGCTGGGCGACAAGTTCCGCCTGGTTTTGGCCACCACCCTG---CGCGAGGATGGTTGCCCGGACAGCGGG------------GAGTACAATCCA------ATGGAGCACGAGGGAACG---CGGGCGGACAGCTTTGAGTACGTGATGTACGGCAAGATCTACAGGATCGAGGGCGACGAAGCACAC---AATGAGGCCTCC---CGGCTCTCC---GCCTACGTGTCATTCGGCGGCTTGCTGATGCGACTTCAGGGTGACGCCAACAATCTTCATGGCTTCGAGGTGGACCAGCACATGTACCTGCTGATGAAGCGG
TRN  10010101100011001
NAM  RPB8_HUMAN/7-147
ASQ  EDIFDVKDIDPEGKKFDRVSRLHCESESFK-MDLILDVNIQIYPVDLGDKFRLVIASTL-YEDGTLDDG----EYNP--TDDRPS-RADQFEYVMYGKVYRIEGDETSTEAAT-RLS-AYVSYGGLLMRLQGDANNLHGFEVDSRVYLLMKK
DSQ  GAGGATATTTTCGATGTGAAGGATATTGACCCGGAGGGCAAGAAGTTTGACCGAGTGTCTCGACTGCATTGTGAGAGTGAATCTTTCAAG---ATGGATCTAATCTTAGATGTAAACATTCAAATTTACCCTGTAGACTTGGGTGACAAGTTCCGGTTGGTCATAGCTAGTACCTTG---TATGAAGATGGTACCCTGGATGATGGT------------GAATACAACCCC------ACTGATGATAGGCCTTCC---AGGGCTGACCAGTTTGAGTATGTAATGTATGGAAAAGTGTACAGGATTGAGGGAGATGAAACTTCTACTGAAGCAGCAACA---CGCCTCTCT---GCGTACGTGTCCTATGGGGGCCTGCTCATGAGGCTGCAGGGGGATGCCAACAACCTGCATGGATTCGAGGTGGACTCCAGAGTTTATCTCCTGATGAAGAAG
TRN  10010101100011010
NAM  Q9M1A8_ARATH/9-145
ASQ  EDIFVVDKLDPDGKKFDKVTRVEARSHNLE-MFMHLDVNTEVYPLAVGDKFTLAMAPTLNL-DGTPDTG----YFTP---GAKKT-LADKYEYIMHGKLYKIS--ERD--GKTPKAE-LYVSFGGLLMLLQGDPAHISHFELDQRLFLLMRK
DSQ  GAGGATATCTTCGTGGTCGATAAGCTAGACCCTGATGGCAAAAAGTTCGATAAAGTTACGCGTGTTGAAGCAAGGAGCCACAACTTGGAA---ATGTTTATGCATTTAGATGTTAACACTGAGGTTTATCCATTGGCTGTTGGTGATAAGTTCACGCTGGCTATGGCTCCCACGCTTAATCTC---GATGGAACTCCTGATACCGGA------------TACTTTACTCCG---------GGAGCAAAGAAAACA---CTTGCAGATAAGTATGAATACATCATGCACGGGAAGCTTTACAAGATCTCT------GAGCGTGAC------GGCAAAACTCCAAAAGCAGAG---TTATATGTTTCGTTCGGGGGGCTCCTGATGTTGCTTCAGGGAGATCCAGCTCATATTTCTCACTTCGAACTTGACCAGAGGCTCTTTCTACTCATGAGGAAG
TRN  10010101100011010
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