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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF03838 - RecU)
FAM  PF03838
PID  RecU
DES  Recombination protein U
IPR  IPR004612
ANO  12
ALN  169
AID  0.437569
APH  ((RECU_LACLA/43-209:0.19295,((Q9EXN0_ENTHR/33-201:0.15162,Q9EXN2_ENTFA/33-201:0.18314):0.20343,((RECU_BACHD/29-196:0.22171,RECU_BACSU/30-196:0.21646):0.08246,((Q9K734_BACHD/7-167:0.87652,((RECU_UREPA/5-163:0.59391,RECU_MYCGE/5-163:0.72762):0.30552,RECU_MYCPU/5-154:0.58144):0.30163):0.24475,RECU_STAAW/31-199:0.28911):0.11179):0.11961):0.17272):0.09410,RECU_STRPY/26-192:0.19105,RECU_STROR/25-191:0.14421);
ATP  ((RECU_LACLA/43-209,((Q9EXN0_ENTHR/33-201,Q9EXN2_ENTFA/33-201),((RECU_BACHD/29-196,RECU_BACSU/30-196),((Q9K734_BACHD/7-167,((RECU_UREPA/5-163,RECU_MYCGE/5-163),RECU_MYCPU/5-154)),RECU_STAAW/31-199)))),RECU_STRPY/26-192,RECU_STROR/25-191);
ATL  6.00575
DNO  12
DLN  507
DID  0.532293
DPH  ((((((((RECU_LACLA/43-209:0.20790,(RECU_STROR/25-191:0.20569,RECU_STRPY/26-192:0.18189):0.10408):0.13036,(Q9EXN0_ENTHR/33-201:0.19414,Q9EXN2_ENTFA/33-201:0.17277):0.13946):0.07674,RECU_BACHD/29-196:0.26285):0.05489,RECU_BACSU/30-196:0.21972):0.07639,RECU_STAAW/31-199:0.26006):0.08213,Q9K734_BACHD/7-167:0.64477):0.14740,RECU_MYCPU/5-154:0.43508):0.19661,RECU_UREPA/5-163:0.37934,RECU_MYCGE/5-163:0.42161);
DTP  ((((((((RECU_LACLA/43-209,(RECU_STROR/25-191,RECU_STRPY/26-192)),(Q9EXN0_ENTHR/33-201,Q9EXN2_ENTFA/33-201)),RECU_BACHD/29-196),RECU_BACSU/30-196),RECU_STAAW/31-199),Q9K734_BACHD/7-167),RECU_MYCPU/5-154),RECU_UREPA/5-163,RECU_MYCGE/5-163);
DTL  4.59388
RID  0.437569
RPH  ((RECU_LACLA/43-209:0.19295,((Q9EXN0_ENTHR/33-201:0.15162,Q9EXN2_ENTFA/33-201:0.18314):0.20343,((RECU_BACHD/29-196:0.22171,RECU_BACSU/30-196:0.21646):0.08246,((Q9K734_BACHD/7-167:0.87652,((RECU_UREPA/5-163:0.59391,RECU_MYCGE/5-163:0.72762):0.30552,RECU_MYCPU/5-154:0.58144):0.30163):0.24475,RECU_STAAW/31-199:0.28911):0.11179):0.11961):0.17272):0.09410,RECU_STRPY/26-192:0.19105,RECU_STROR/25-191:0.14421);
RTP  ((RECU_LACLA/43-209,((Q9EXN0_ENTHR/33-201,Q9EXN2_ENTFA/33-201),((RECU_BACHD/29-196,RECU_BACSU/30-196),((Q9K734_BACHD/7-167,((RECU_UREPA/5-163,RECU_MYCGE/5-163),RECU_MYCPU/5-154)),RECU_STAAW/31-199)))),RECU_STRPY/26-192,RECU_STROR/25-191);
RTL  6.00575
LNK  Q9EXN0_ENTHR/33-201:Q9EXN0:AJ302066
LNK  Q9EXN2_ENTFA/33-201:Q9EXN2:AJ302065
LNK  Q9K734_BACHD/7-167:Q9K734:BA000004
LNK  RECU_BACHD/29-196:Q9KC71:AP001512
LNK  RECU_BACSU/30-196:P39792:U11883
LNK  RECU_LACLA/43-209:Q9CI22:AE006288
LNK  RECU_MYCGE/5-163:Q49422:U39717
LNK  RECU_MYCPU/5-154:Q98RC3:AL445563
LNK  RECU_STAAW/31-199:P68818:AP004826
LNK  RECU_STROR/25-191:Q00579:M90528
LNK  RECU_STRPY/26-192:Q99YL2:AE006596
LNK  RECU_UREPA/5-163:Q9PQJ4:AE002127
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  RECU_STAAW/31-199
ASQ  GRGMSLEKDIEHSNTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEAYFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWKRYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKL
DSQ  GGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATACGTTTTATCTTAAAAGCGACATTGCAGTTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAGCGGAGTAAAGCTGTGATTAACGAAGCTTATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAAAAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTATTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAGTATTTTGGAAGAGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCAACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTG
TRN  10010101110011000
NAM  RECU_BACSU/30-196
ASQ  NRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAYFKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVII--SAFDQVYFLEADKLFYFWDRKEKNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQL
DSQ  AATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTATACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTACTTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAACAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTTGTTTTGTTATTATA------TCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAAAAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAATTGATTATATTAGTATTATTGAACAGCTT
TRN  10010101100011000
NAM  RECU_BACHD/29-196
ASQ  NRGMTLESDINETNSYYLTHGRAVIHKKPTPVQIVNVDYPKRSAAVIKEAYFKQPSTTDYNGVYRGKYLDFEAKETRNKTSFPIQNFHEHQMEHMKKVLAQDGICFVIVRFTTFDETYLLDASHVIKAFETKETK-RKSIPKSYIDSYGHLIKIGYHPRVDYLHVVDQV
DSQ  AATCGCGGCATGACGCTCGAATCCGACATTAACGAAACAAACAGCTACTATTTAACCCATGGCCGAGCGGTTATCCATAAAAAGCCGACGCCTGTTCAAATCGTCAACGTCGATTATCCAAAGCGAAGTGCGGCTGTCATCAAAGAAGCCTACTTTAAACAGCCGTCAACAACGGATTACAACGGTGTATACCGCGGAAAGTATCTTGATTTCGAAGCGAAAGAAACACGGAATAAAACATCCTTTCCGATTCAAAACTTTCATGAGCATCAAATGGAACATATGAAAAAAGTGCTCGCCCAAGATGGGATCTGCTTTGTTATCGTAAGATTTACAACGTTTGATGAAACCTATCTTCTCGACGCATCCCATGTTATAAAGGCTTTTGAAACGAAAGAAACGAAG---CGGAAATCCATTCCAAAGTCCTATATTGACAGTTACGGACATTTAATTAAAATAGGATATCATCCACGTGTAGATTATTTACATGTGGTTGATCAAGTG
TRN  10010101110011000
NAM  Q9EXN2_ENTFA/33-201
ASQ  NRGMDFEEAINQSNQYYLLNKQAVVHKKPTPVQIVKVDYPKRSAAVIKEAYFRQASTTDYNGVYQGRYIDFEAKETKNTTSFPFKNFHQHQIDHMEQCIAQQGICFVLLWFSSLKRCFFFSGENLITHWKNQAVTGKKSMPLALIEKEGIELSFGIAPRIPYLDAVEQY
DSQ  AATCGCGGGATGGATTTCGAAGAAGCGATCAATCAAAGCAATCAATATTATCTATTGAATAAGCAAGCAGTCGTTCATAAGAAACCCACTCCTGTTCAAATTGTTAAAGTAGATTATCCCAAACGAAGTGCGGCTGTTATTAAGGAGGCCTACTTTAGACAAGCTTCAACGACTGATTATAACGGTGTATATCAAGGCCGTTACATAGATTTTGAAGCGAAAGAAACGAAAAATACCACGTCCTTTCCCTTTAAAAATTTTCATCAACATCAAATTGATCATATGGAACAATGTATAGCACAACAAGGGATTTGTTTTGTGCTATTATGGTTTTCAAGCTTAAAACGCTGCTTCTTTTTTAGTGGTGAAAATCTAATAACGCATTGGAAAAACCAAGCAGTTACTGGAAAAAAATCTATGCCGCTTGCACTCATCGAGAAAGAAGGAATTGAATTATCTTTTGGAATCGCACCGCGAATCCCTTATCTCGACGCAGTGGAACAATAT
TRN  10010101110011000
NAM  Q9EXN0_ENTHR/33-201
ASQ  NRGMRFEEAINESNQYYLAHQVAVIHKKPTPIQIVKVDYPRRSAAVIKEAYFSQASTTDYNGVYRGFYLDFEAKETKNKTSFPFKNFHAHQIDHMEACLKQQGICFVLLWFSTLKRCFYLDSTYLIDYWHAQKDQGKKSLPLSLIEKIGIEIQTGFSPRIPYLKAVDQY
DSQ  AATCGAGGGATGCGTTTTGAAGAAGCAATTAACGAAAGTAACCAGTATTACTTAGCGCACCAAGTAGCTGTTATCCATAAAAAACCAACCCCCATTCAAATTGTTAAAGTAGATTATCCTCGACGTAGCGCCGCTGTTATTAAGGAAGCTTATTTCTCACAGGCCTCCACAACAGATTATAACGGTGTATATCGAGGTTTCTATTTGGATTTTGAAGCGAAAGAAACAAAGAATAAGACATCTTTTCCCTTCAAAAATTTCCATGCGCATCAAATTGACCATATGGAAGCTTGTCTAAAGCAACAAGGAATTTGTTTTGTCCTATTATGGTTTTCTACGTTGAAGCGTTGCTTTTATTTAGATAGTACTTATCTGATCGATTATTGGCATGCGCAAAAGGATCAGGGGAAAAAGTCGCTTCCGCTTTCATTGATCGAAAAAATAGGGATCGAGATCCAAACAGGTTTTTCGCCACGTATCCCTTATCTAAAAGCGGTAGATCAATAC
TRN  10010101100011000
NAM  RECU_STRPY/26-192
ASQ  NRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQIDN--GSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQN
DSQ  AATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTCACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCGTACTTTAGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAAAACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCTTTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGATAAT------GGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCCTTATTTAAACATAATTGAACAAAAT
TRN  10010101100011000
NAM  RECU_STROR/25-191
ASQ  NRGMSFEKMINATNDYYLSHGLAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQASTTDYSGVYDGYYIDFEAKETRQKHAIPMKNFHHHQIQHMEQVLAQRGICFVLLHFASQQETYLLPAVDLIRFYHQDK--GQKSMPLGYIRENGYRIELGAFPQIPYLDIIKEH
DSQ  AATCGGGGAATGTCTTTTGAAAAGATGATCAATGCTACGAACGATTATTACTTGTCGCATGGGTTAGCAGTGATTCACAAGAAACCGACTCCCATCCAAATCGTACGTGTCGATTATCCCCAACGAAGTCGAGCCAAGATCGTTGAAGCCTACTTCAGACAAGCTTCAACCACAGACTATTCAGGGGTTTATGATGGATATTACATCGACTTTGAAGCAAAGGAAACTAGGCAAAAACATGCGATTCCGATGAAGAATTTCCATCACCATCAGATTCAGCATATGGAACAGGTCCTTGCCCAGCGAGGAATCTGCTTTGTCCTTCTTCACTTTGCTTCTCAGCAAGAAACTTATTTATTGCCGGCTGTTGACCTGATTCGTTTCTATCATCAAGATAAG------GGACAAAAGTCAATGCCACTTGGATATATTCGAGAAAACGGATATAGGATTGAGCTAGGTGCCTTTCCCCAGATTCCCTATCTCGATATTATCAAAGAACAT
TRN  10010101100011000
NAM  RECU_LACLA/43-209
ASQ  KRGMNFEAEINATNEYYLSRGLAVIHKKPTPIQIVKVDYPQRSRAKITEAYFRQASTTDYSGVYKGHYIDFEAKETQQKTVFPLKNFHEHQIVHMSNVLAQGGIAFVLLHFARLNETYLLPSSCLITFYYEKG--GLKSIPLSHIRENGYKIETNHIPRIPYLEIVNKL
DSQ  AAGCGGGGAATGAATTTTGAAGCTGAAATTAATGCAACAAATGAGTATTATCTTTCTCGTGGACTTGCAGTTATTCACAAAAAGCCAACACCAATTCAAATCGTTAAAGTAGATTATCCACAAAGGAGTCGTGCAAAAATTACAGAAGCTTACTTCAGGCAAGCATCTACTACTGACTACTCTGGAGTCTATAAAGGTCACTACATCGACTTTGAAGCAAAGGAAACACAGCAAAAAACTGTTTTCCCTCTAAAAAATTTCCATGAGCATCAAATTGTTCACATGAGTAATGTTCTCGCTCAAGGGGGAATTGCTTTTGTCCTCTTGCACTTTGCAAGGTTAAATGAAACATATCTTCTTCCATCTTCGTGTTTGATTACTTTTTATTACGAAAAAGGC------GGTTTAAAGTCAATTCCGCTTTCTCATATTCGCGAAAATGGCTATAAAATTGAAACGAACCACATTCCTAGAATTCCTTATCTAGAAATTGTGAATAAACTT
TRN  10010101110011000
NAM  RECU_MYCPU/5-154
ASQ  NRGMFLEKVINQSIDFYNLNDLALFEKKATP----KVS---KTSGVIIHK---K-STVDYIGIYQGIFIAFEAKSFSGK-NFSLSNIKNHQHEYLEKINKHKGLGFYFFFHEDEEKFYLMESKKLNNLT-------KKSISIEQIKKNALQIELSFPGIVDFLPWVKSL
DSQ  AATAGAGGTATGTTTTTGGAAAAAGTAATTAACCAAAGCATTGATTTTTATAATTTGAATGACTTAGCTCTTTTTGAAAAAAAGGCAACTCCA------------AAGGTTTCA---------AAAACAAGTGGGGTGATAATTCATAAA---------AAA---AGTACAGTTGACTACATAGGTATTTATCAAGGAATTTTCATTGCCTTTGAGGCAAAATCTTTTTCAGGAAAA---AACTTTAGTTTATCAAATATAAAAAATCACCAACATGAATACTTAGAAAAAATAAACAAGCATAAAGGCCTTGGCTTTTATTTTTTCTTTCATGAAGATGAAGAAAAGTTTTATTTAATGGAATCTAAAAAATTAAACAATCTCACA---------------------AAAAAATCTATATCTATTGAGCAAATTAAAAAAAATGCATTGCAAATAGAGCTAAGCTTTCCTGGAATAGTTGATTTTTTACCTTGAGTAAAATCGCTT
TRN  00010000000000000
NAM  Q9K734_BACHD/7-167
ASQ  NRGMSFEQLVEYTNRCYFIKGMADVRKVATPVKVLRI-----SKGRIRDGFFEKKSTVDFIGVSHGRAIAFDAKSTRNRTRFPLSNIEPHQMAFLKSWKDQGAIAFFLVEFVKHQEVYFLPYREAEKWWEEAGEGGRKSIPYEWFVQNCDLVRPDKGIPLHYLKCL---
DSQ  AATCGCGGCATGAGTTTTGAACAATTGGTGGAATATACGAACCGTTGTTACTTTATAAAAGGCATGGCGGATGTTCGGAAGGTAGCCACACCGGTGAAGGTTTTACGTATT---------------TCAAAAGGCCGGATCCGGGATGGCTTTTTTGAAAAAAAATCAACGGTTGACTTCATTGGCGTATCTCATGGCCGGGCGATTGCCTTCGATGCCAAATCGACAAGAAACCGGACGCGGTTTCCTCTCAGCAATATCGAACCGCATCAAATGGCTTTTTTGAAATCCTGGAAGGACCAGGGGGCGATCGCGTTTTTCTTGGTGGAATTCGTGAAACATCAAGAGGTCTATTTTCTTCCTTATCGCGAGGCGGAGAAATGGTGGGAGGAAGCCGGGGAAGGCGGCCGGAAATCTATTCCTTATGAATGGTTCGTCCAAAATTGCGATCTGGTGCGGCCGGATAAAGGCATACCTTTGCATTACTTGAAATGTTTG---------
TRN  10010101100011000
NAM  RECU_MYCGE/5-163
ASQ  NRGMLLETIVNQTIARLKDHPDIWLEKRFLPIKPIAFR-----HAHVSGN-VSQKSKTDYYGIYKGMYFDFEAKQTNKS-NFPIAQIAEHQLNHLKRIDQIGGVSFLLIYFQTKDQIFAFHTKDLLETIKNQE---SKTIKRELIEQKSQKVPLLYPGIIDLISIIQSF
DSQ  AATCGCGGAATGCTTTTAGAGACAATTGTTAATCAAACAATTGCTAGGTTAAAGGATCATCCAGATATTTGACTGGAAAAGCGGTTCTTACCTATTAAGCCTATAGCTTTTCGT---------------CATGCTCATGTATCTGGCAAC---GTATCACAAAAATCAAAAACTGATTATTATGGAATTTACAAGGGAATGTATTTTGATTTTGAAGCAAAACAAACAAATAAAAGT---AATTTTCCAATTGCTCAAATAGCAGAACACCAATTAAATCATTTGAAAAGAATTGACCAAATTGGAGGAGTTAGCTTCTTGCTAATTTACTTTCAAACTAAAGATCAAATTTTTGCATTTCACACTAAGGATCTTCTAGAAACAATAAAAAATCAAGAA---------AGCAAAACAATTAAAAGGGAATTGATAGAACAAAAATCTCAGAAAGTTCCACTATTGTATCCTGGTATTATTGATTTAATTTCAATAATTCAAAGCTTT
TRN  00010000000000000
NAM  RECU_UREPA/5-163
ASQ  NNGMHLEVLINKSISLFNLQYQAFFKKRCVDIIIKNID-----NSYVQGK-IKQKSETDYYGFYKGDYFDFEAKQTNKN-SFLIKQIQPHQLAHLYLIHKNSGFSFLIICFINYNLYFIITFQQLINYYQKTK---RKSIPFQWFKDQCIELEIIFPGVINFKKMINDL
DSQ  AACAATGGAATGCATCTTGAAGTATTAATTAATAAATCAATTAGCTTGTTTAATTTACAATATCAAGCTTTTTTTAAAAAAAGGTGTGTTGATATTATTATTAAAAATATTGAT---------------AATTCTTATGTTCAAGGAAAA---ATCAAGCAAAAAAGTGAAACTGATTATTACGGATTCTATAAAGGTGATTATTTTGATTTTGAAGCTAAACAAACAAATAAAAAC---TCATTTTTAATAAAACAAATACAACCGCACCAACTAGCACATTTGTATTTAATTCATAAAAATTCAGGTTTCTCTTTTTTAATTATTTGTTTCATTAATTACAATCTATATTTTATTATCACTTTTCAACAATTAATTAACTATTATCAAAAAACTAAG---------CGGAAATCCATTCCCTTTCAATGATTTAAGGATCAATGTATTGAATTAGAAATAATTTTTCCAGGTGTTATTAATTTTAAAAAAATGATTAATGATTTG
TRN  00010000000000000
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