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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF03725 - RNase_PH_C)
FAM  PF03725
PID  RNase_PH_C
DES  3' exoribonuclease family, domain 2
IPR  IPR001247
ANO  32
ALN  98
AID  0.216287
APH  ((((((((((((Q20128_CAEEL/189-257:0.84153,MTR3_YEAST/199-250:2.98589):0.00000,(RRP43_SCHPO/203-269:0.91915,RRP45_YEAST/191-271:0.65785):0.45416):0.42888,((RRP42_YEAST/183-254:1.23581,ECX2_ARCFU/182-248:1.10388):0.00000,(ECX2_METTH/191-257:0.81726,EXOS7_HUMAN/196-262:0.75478):0.28124):0.10916):0.17842,RRP43_YEAST/322-384:1.17083):0.16497,(((PNP_BACSU/146-210:0.19136,(P72659_SYNY3/145-209:0.36977,(PNP_ECOLI/147-211:0.41429,(Q41370_SPIOL/220-284:0.24785,Q53597_STRAT/154-219:0.65502):0.11619):0.10397):0.17831):0.34792,O25812_HELPY/143-212:0.45860):0.45869,RRP46_YEAST/162-234:1.11636):0.24073):0.16168,(EXOS4_CAEEL/150-215:0.65841,(RRP41_SCHPO/154-218:0.43940,RRP41_YEAST/156-220:0.66273):0.21574):0.64553):0.10977,(PNP_BACSU/459-529:0.00000,(P72659_SYNY3/470-540:0.39217,(O32966_MYCLE/501-579:0.46936,(PNP_ECOLI/459-529:0.19617,(O24288_PEA/589-665:0.30321,O25812_HELPY/457-527:0.35428):0.15396):0.08696):0.07335):0.12545):0.89326):0.14496,(ECX1_METTH/157-222:0.52121,ECX1_ARCFU/157-225:0.38191):0.18575):0.55062,RNPH_MYCTU/160-227:0.45449):0.02173,RNPH_BACSU/157-225:0.32590):0.09439,RNPH_CAUCR/157-224:0.47189):0.14220,RNPH_PSEAE/158-225:0.24380,RNPH_ECOLI/157-224:0.25629);
ATP  ((((((((((((Q20128_CAEEL/189-257,MTR3_YEAST/199-250),(RRP43_SCHPO/203-269,RRP45_YEAST/191-271)),((RRP42_YEAST/183-254,ECX2_ARCFU/182-248),(ECX2_METTH/191-257,EXOS7_HUMAN/196-262))),RRP43_YEAST/322-384),(((PNP_BACSU/146-210,(P72659_SYNY3/145-209,(PNP_ECOLI/147-211,(Q41370_SPIOL/220-284,Q53597_STRAT/154-219)))),O25812_HELPY/143-212),RRP46_YEAST/162-234)),(EXOS4_CAEEL/150-215,(RRP41_SCHPO/154-218,RRP41_YEAST/156-220))),(PNP_BACSU/459-529,(P72659_SYNY3/470-540,(O32966_MYCLE/501-579,(PNP_ECOLI/459-529,(O24288_PEA/589-665,O25812_HELPY/457-527)))))),(ECX1_METTH/157-222,ECX1_ARCFU/157-225)),RNPH_MYCTU/160-227),RNPH_BACSU/157-225),RNPH_CAUCR/157-224),RNPH_PSEAE/158-225,RNPH_ECOLI/157-224);
ATL  27.063
DNO  32
DLN  294
DID  0.382495
DPH  (((((((((((ECX2_ARCFU/182-248:0.54974,(RRP45_YEAST/191-271:0.56979,Q20128_CAEEL/189-257:0.62239):0.12957):0.17562,(RRP43_SCHPO/203-269:0.50969,RRP42_YEAST/183-254:0.59607):0.15335):0.19755,(RRP43_YEAST/322-384:0.60815,MTR3_YEAST/199-250:0.84527):0.17824):0.05046,RRP46_YEAST/162-234:0.54961):0.06077,(EXOS4_CAEEL/150-215:0.52985,(RRP41_SCHPO/154-218:0.32979,RRP41_YEAST/156-220:0.52331):0.25709):0.30059):0.09139,EXOS7_HUMAN/196-262:0.71150):0.21882,((O32966_MYCLE/501-579:0.19356,((PNP_ECOLI/459-529:0.23633,((O24288_PEA/589-665:0.34859,O25812_HELPY/457-527:0.31201):0.08745,PNP_BACSU/459-529:0.19696):0.08208):0.05433,P72659_SYNY3/470-540:0.31479):0.08865):0.30798,(((((PNP_ECOLI/147-211:0.30730,Q41370_SPIOL/220-284:0.42026):0.06263,PNP_BACSU/146-210:0.31466):0.04080,Q53597_STRAT/154-219:0.45477):0.07934,P72659_SYNY3/145-209:0.30239):0.05313,O25812_HELPY/143-212:0.68741):0.25062):0.17828):0.04525,((ECX1_METTH/157-222:0.36031,ECX1_ARCFU/157-225:0.29707):0.12830,ECX2_METTH/191-257:0.67140):0.05394):0.20975,RNPH_CAUCR/157-224:0.28064):0.07108,(RNPH_BACSU/157-225:0.42724,RNPH_MYCTU/160-227:0.33207):0.05579):0.09303,RNPH_PSEAE/158-225:0.17646,RNPH_ECOLI/157-224:0.24469);
DTP  (((((((((((ECX2_ARCFU/182-248,(RRP45_YEAST/191-271,Q20128_CAEEL/189-257)),(RRP43_SCHPO/203-269,RRP42_YEAST/183-254)),(RRP43_YEAST/322-384,MTR3_YEAST/199-250)),RRP46_YEAST/162-234),(EXOS4_CAEEL/150-215,(RRP41_SCHPO/154-218,RRP41_YEAST/156-220))),EXOS7_HUMAN/196-262),((O32966_MYCLE/501-579,((PNP_ECOLI/459-529,((O24288_PEA/589-665,O25812_HELPY/457-527),PNP_BACSU/459-529)),P72659_SYNY3/470-540)),(((((PNP_ECOLI/147-211,Q41370_SPIOL/220-284),PNP_BACSU/146-210),Q53597_STRAT/154-219),P72659_SYNY3/145-209),O25812_HELPY/143-212))),((ECX1_METTH/157-222,ECX1_ARCFU/157-225),ECX2_METTH/191-257)),RNPH_CAUCR/157-224),(RNPH_BACSU/157-225,RNPH_MYCTU/160-227)),RNPH_PSEAE/158-225,RNPH_ECOLI/157-224);
DTL  17.65
RID  0.216287
RPH  ((((((((((((Q20128_CAEEL/189-257:0.84153,MTR3_YEAST/199-250:2.98589):0.00000,(RRP43_SCHPO/203-269:0.91915,RRP45_YEAST/191-271:0.65785):0.45416):0.42888,((RRP42_YEAST/183-254:1.23581,ECX2_ARCFU/182-248:1.10388):0.00000,(ECX2_METTH/191-257:0.81726,EXOS7_HUMAN/196-262:0.75478):0.28124):0.10916):0.17842,RRP43_YEAST/322-384:1.17083):0.16497,(((PNP_BACSU/146-210:0.19136,(P72659_SYNY3/145-209:0.36977,(PNP_ECOLI/147-211:0.41429,(Q41370_SPIOL/220-284:0.24785,Q53597_STRAT/154-219:0.65502):0.11619):0.10397):0.17831):0.34792,O25812_HELPY/143-212:0.45860):0.45869,RRP46_YEAST/162-234:1.11636):0.24073):0.16168,(EXOS4_CAEEL/150-215:0.65841,(RRP41_SCHPO/154-218:0.43940,RRP41_YEAST/156-220:0.66273):0.21574):0.64553):0.10977,(PNP_BACSU/459-529:0.00000,(P72659_SYNY3/470-540:0.39217,(O32966_MYCLE/501-579:0.46936,(PNP_ECOLI/459-529:0.19617,(O24288_PEA/589-665:0.30321,O25812_HELPY/457-527:0.35428):0.15396):0.08696):0.07335):0.12545):0.89326):0.14496,(ECX1_METTH/157-222:0.52121,ECX1_ARCFU/157-225:0.38191):0.18575):0.55062,RNPH_MYCTU/160-227:0.45449):0.02173,RNPH_BACSU/157-225:0.32590):0.09439,RNPH_CAUCR/157-224:0.47189):0.14220,RNPH_PSEAE/158-225:0.24380,RNPH_ECOLI/157-224:0.25629);
RTP  ((((((((((((Q20128_CAEEL/189-257,MTR3_YEAST/199-250),(RRP43_SCHPO/203-269,RRP45_YEAST/191-271)),((RRP42_YEAST/183-254,ECX2_ARCFU/182-248),(ECX2_METTH/191-257,EXOS7_HUMAN/196-262))),RRP43_YEAST/322-384),(((PNP_BACSU/146-210,(P72659_SYNY3/145-209,(PNP_ECOLI/147-211,(Q41370_SPIOL/220-284,Q53597_STRAT/154-219)))),O25812_HELPY/143-212),RRP46_YEAST/162-234)),(EXOS4_CAEEL/150-215,(RRP41_SCHPO/154-218,RRP41_YEAST/156-220))),(PNP_BACSU/459-529,(P72659_SYNY3/470-540,(O32966_MYCLE/501-579,(PNP_ECOLI/459-529,(O24288_PEA/589-665,O25812_HELPY/457-527)))))),(ECX1_METTH/157-222,ECX1_ARCFU/157-225)),RNPH_MYCTU/160-227),RNPH_BACSU/157-225),RNPH_CAUCR/157-224),RNPH_PSEAE/158-225,RNPH_ECOLI/157-224);
RTL  27.063
LNK  ECX1_ARCFU/157-225:O29757:AE001070
LNK  ECX1_METTH/157-222:O26779:AE000848
LNK  ECX2_ARCFU/182-248:O29756:AE001070
LNK  ECX2_METTH/191-257:O26778:AE000848
LNK  EXOS4_CAEEL/150-215:Q17533:Z73422
LNK  EXOS7_HUMAN/196-262:Q15024:BC012831
LNK  MTR3_YEAST/199-250:P48240:X85807
LNK  O24288_PEA/589-665:O24288:AF010578
LNK  O25812_HELPY/143-212:O25812:AE000627
LNK  O25812_HELPY/457-527:O25812:AE000627
LNK  O32966_MYCLE/501-579:O32966:Z98741
LNK  P72659_SYNY3/145-209:P72659:BA000022
LNK  P72659_SYNY3/470-540:P72659:BA000022
LNK  PNP_BACSU/146-210:P50849:U29668
LNK  PNP_BACSU/459-529:P50849:U29668
LNK  PNP_ECOLI/147-211:P05055:J02638
LNK  PNP_ECOLI/459-529:P05055:J02638
LNK  Q20128_CAEEL/189-257:Q20128:U00033
LNK  Q41370_SPIOL/220-284:Q41370:U52048
LNK  Q53597_STRAT/154-219:Q53597:U19858
LNK  RNPH_BACSU/157-225:P28619:M85163
LNK  RNPH_CAUCR/157-224:P48196:AE005689
LNK  RNPH_ECOLI/157-224:P03842:X00781
LNK  RNPH_MYCTU/160-227:Q10628:BX842576
LNK  RNPH_PSEAE/158-225:P50597:AE004946
LNK  RRP41_SCHPO/154-218:O42872:D89141
LNK  RRP41_YEAST/156-220:P46948:X82775
LNK  RRP42_YEAST/183-254:Q12277:X95644
LNK  RRP43_SCHPO/203-269:Q10205:AL031322
LNK  RRP43_YEAST/322-384:P25359:X59720
LNK  RRP45_YEAST/191-271:Q05636:U51030
LNK  RRP46_YEAST/162-234:P53256:Z72880
AMK  xxxxxxxxxxxxxxxxx...x.....xxxxx.xxxxxxxxxx.xxxxxxxxxxxx..xxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxx...............xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  MTR3_YEAST/199-250
ASQ  TVVSFIKNG--------...-.....EEIVGfWKDDGDDEDL.------------..---.------LECLDRCK--.EQYNRYRDLMISCLMNQET-
DSQ  ACTGTCGTATCATTCATCAAAAATGGA------------------------.........---...............GAGGAAATTGTAGGTtttTGGAAGGATGATGGTGACGATGAAGATCTT...------------------------------------......---------...------------------TTGGAATGCCTTGATCGTTGCAAG------...GAGCAATATAACCGTTATAGAGATTTAATGATAAGCTGTTTAATGAACCAGGAAACT---
TRN  10010101110011000
NAM  RRP46_YEAST/162-234
ASQ  SMCASIPIAIIKDTS--...-.....--DII.-VDPTAEQLKiSLSVHTLALEFV..NGG.-KVVKNVLLLDSNG--.---DFNEDQLFSLLELGEQK
DSQ  AGTATGTGCGCAAGCATCCCTATTGCAATAATCAAAGACACTAGT------.........---...............------GATATCATT...---GTCGATCCCACTGCCGAGCAATTGAAGattTCGCTCTCTGTCCACACTTTAGCTCTGGAGTTCGTC......AATGGCGGT...---AAAGTCGTGAAAAACGTTTTATTGTTAGACAGCAATGGT------...---------GATTTTAATGAAGATCAATTGTTCAGTTTACTGGAGCTGGGTGAGCAAAAG
TRN  10010101100011010
NAM  RRP42_YEAST/183-254
ASQ  NPPLVFILAVVGN----...-.....--NML.-LDPAANESE.-VANNGLIISWS..-NGkITSPIRSVALNDS---.NVKSFKPHLLKQGLAMVEKY
DSQ  AATCCGCCTTTAGTGTTTATATTGGCCGTTGTAGGCAAC------------.........---...............------AATATGCTA...---TTGGACCCTGCAGCCAACGAAAGCGAA...---GTGGCCAATAATGGCCTAATCATTTCCTGGTCT......---AATGGTaagATTACATCACCTATCAGATCAGTAGCATTGAATGATTCA---------...AACGTTAAAAGCTTTAAACCTCATTTGTTGAAGCAAGGTCTTGCAATGGTGGAGAAATAC
TRN  10010101110011000
NAM  ECX2_ARCFU/182-248
ASQ  DLPVSVTSLIVGN----...-.....--KYL.-VDPSREEMS.-VGDTTLTITTD..KD-.----DNVVAMQK--SG.-GYLLDEKLFDELLDVSINC
DSQ  GACCTTCCGGTGTCTGTGACGTCGCTGATTGTGGGTAAC------------.........---...............------AAGTATCTC...---GTCGACCCCAGCAGGGAGGAAATGAGC...---GTTGGAGATACGACTCTTACAATCACAACCGAC......AAGGAT---...------------GATAACGTCGTTGCGATGCAGAAA------AGCGGT...---GGTTACCTGCTAGATGAAAAGCTTTTCGATGAGCTTCTGGATGTGAGCATAAACTGC
TRN  10010101100011011
NAM  EXOS7_HUMAN/196-262
ASQ  NVPCIVTLCKIG-----...-.....-YRHV.-VDATLQEEA.-CSLASLLVSVT..SKG.-----VVTCMRK--VG.-KGSLDPESIFEMMETGKRV
DSQ  AATGTCCCCTGCATTGTCACTCTGTGCAAGATTGGC---------------.........---...............---TATCGGCATGTG...---GTGGATGCTACTCTTCAGGAGGAGGCC...---TGCTCGCTGGCCAGCTTGCTGGTGTCGGTGACC......AGCAAGGGA...---------------GTTGTGACGTGCATGAGGAAA------GTGGGG...---AAGGGCAGCCTGGACCCAGAGAGCATCTTCGAGATGATGGAGACTGGCAAGCGTGTG
TRN  10010101100011011
NAM  ECX2_METTH/191-257
ASQ  RKALMCTFAKIGN----...-.....--EIV.-LDPSLEEED.-ILTARISIGVT..EEG.-----SICAMQKG--G.-EGPLTRDDVLKAVSIAVEK
DSQ  AGGAAGGCCCTCATGTGCACCTTCGCCAAGATAGGAAAC------------.........---...............------GAGATCGTG...---CTCGACCCCTCCCTCGAGGAGGAGGAC...---ATACTCACAGCAAGGATATCCATAGGTGTTACT......GAGGAGGGC...---------------TCCATATGCGCCATGCAGAAGGGT------GGT...---GAGGGGCCACTCACAAGGGATGATGTCCTTAAGGCAGTCTCAATTGCAGTGGAGAAG
TRN  10010101110011001
NAM  RRP45_YEAST/191-271
ASQ  HIPICVTFSFFNPQD-TeenIkgetnSEISI.-IDATLKEE-.LLRDGVLTVTLN..---.----KNREVVQVSKAG.-GLPMDALTLMKCCHEAYSI
DSQ  CATATTCCAATATGTGTAACTTTTTCTTTCTTCAATCCTCAAGAC---ACCgaggaaaacATAaaaggtgagactaacTCAGAAATTTCCATC...---ATTGATGCAACATTGAAAGAGGAA---...CTACTGCGAGATGGTGTATTGACGGTTACGCTAAAC......---------...------------AAAAACCGTGAAGTGGTACAAGTTTCCAAAGCGGGT...---GGTTTACCAATGGATGCGTTGACGCTAATGAAATGTTGTCACGAGGCTTACAGCATT
TRN  10010101100011000
NAM  RRP43_SCHPO/203-269
ASQ  TEVRSFSWSVFDD----...-.....--KLL.-ADPTDEEED.-LSTEFLTIMLN..---.----SSKNIVKIIKLG.-GTHIQPLLLKKCIEVARSK
DSQ  ACTGAAGTTCGTTCTTTCTCATGGTCAGTATTTGACGAC------------.........---...............------AAGTTGTTA...---GCCGACCCTACAGACGAGGAGGAGGAC...---CTTTCAACTGAATTTTTGACAATTATGCTTAAT......---------...------------AGCTCCAAAAATATTGTTAAGATAATAAAGCTTGGA...---GGCACTCACATTCAACCCCTTTTATTAAAAAAGTGTATTGAGGTTGCAAGGTCTAAG
TRN  10010101110011000
NAM  Q20128_CAEEL/189-257
ASQ  HMPICTTIGLLDKGQ--...-.....--IVV.-IDPTDKETA.-CLDGSIVVACN..---.--KRREVCALHQST--.-NLILSTKQIERCVKLAMAR
DSQ  CATATGCCAATTTGTACAACCATCGGATTATTGGATAAAGGACAA------.........---...............------ATTGTAGTC...---ATCGATCCAACAGATAAAGAAACTGCA...---TGTCTTGATGGATCAATTGTAGTTGCCTGCAAT......---------...------AAGCGTCGCGAAGTTTGTGCCCTCCATCAGAGCACA------...---AATCTCATTTTATCAACAAAGCAGATCGAGCGTTGCGTAAAGTTGGCAATGGCTCGT
TRN  11011101111011000
NAM  RRP43_YEAST/322-384
ASQ  DMDKLNTVLIAD-----...-.....-----.-LDTEAEETS.IHSTISILAAPS..GN-.---YKQLTLVGGGA--.---KITPEMIKRSLLLSRVR
DSQ  GATATGGATAAATTGAACACTGTGCTAATAGCAGAC---------------.........---...............---------------...---CTAGATACTGAAGCGGAAGAAACAAGT...ATACACAGTACGATCTCCATCCTCGCTGCTCCTTCA......GGTAAC---...---------TATAAGCAATTAACATTAGTGGGAGGAGGCGCT------...---------AAAATAACGCCAGAAATGATAAAAAGATCATTGTTGTTATCTAGGGTTAGA
TRN  10010101110011000
NAM  RNPH_MYCTU/160-227
ASQ  CAIAAVSVGVVDGR---...-.....---IR.-VDLPYEEDS.-RAEVDMNVVAT..DTG.-----TLVEIQGTGEG.--ATFARSTLDKLLDMALGA
DSQ  TGTGCCATCGCCGCGGTCAGCGTCGGTGTTGTCGACGGCAGG---------.........---...............---------ATCCGG...---GTGGATCTGCCCTACGAGGAAGATTCG...---CGCGCCGAGGTCGACATGAACGTCGTCGCTACC......GACACCGGA...---------------ACCCTGGTAGAGATTCAGGGCACCGGCGAAGGC...------GCGACGTTCGCACGTTCGACACTGGATAAGCTGCTGGACATGGCACTGGGCGCC
TRN  10010101100011011
NAM  RNPH_BACSU/157-225
ASQ  DFLAAISVGIDKEQG--...-.....---IL.-LDLNYEEDS.-SAEVDMNVIMT..GSG.-----RFVELQGTG--.EEATFSREDLNGLLGLAEKG
DSQ  GATTTTCTTGCTGCAATCTCTGTTGGAATTGATAAGGAACAGGGA------.........---...............---------ATTTTG...---TTAGATTTAAATTATGAAGAAGATTCC...---TCTGCTGAAGTTGACATGAATGTCATCATGACA......GGCAGCGGC...---------------CGTTTTGTGGAATTGCAGGGAACCGGG------...GAAGAGGCAACTTTTTCTAGAGAGGATCTGAACGGTCTTCTGGGTCTTGCGGAAAAAGGA
TRN  10010101100011010
NAM  RNPH_ECOLI/157-224
ASQ  GMVAAVSVGIVNGE---...-.....---AV.-CDLEYVEDS.-AAETDMNVVMT..EDG.-----RIIEVQGTA--.EGEPFTHEELLILLALARGG
DSQ  GGGATGGTAGCCGCAGTTTCTGTCGGAATTGTGAACGGCGAA---------.........---...............---------GCGGTT...---TGCGATCTGGAATACGTTGAAGACTCT...---GCCGCAGAGACCGACATGAACGTAGTGATGACC......GAAGACGGG...---------------CGCATCATTGAAGTGCAGGGGACGGCA------...GAAGGCGAGCCGTTCACCCATGAAGAGCTACTCATCTTGTTGGCTCTGGCCCGAGGGGGA
TRN  11011111101111111
NAM  RNPH_PSEAE/158-225
ASQ  QMVAAVSVGIYQGV---...-.....---PV.-LDLDYLEDS.-AAETDLNVVMT..DAG.-----GFIEVQGTAEG.--APFRPAELNAMLELAQQG
DSQ  CAAATGGTCGCCGCCGTTTCCGTGGGCATCTACCAGGGCGTG---------.........---...............---------CCGGTC...---CTCGACCTGGACTACCTGGAGGATTCC...---GCCGCGGAAACCGACCTGAACGTAGTGATGACC......GATGCCGGC...---------------GGCTTCATCGAGGTGCAGGGAACCGCCGAAGGC...------GCGCCGTTCCGTCCCGCCGAGCTGAACGCCATGCTCGAACTGGCCCAGCAGGGC
TRN  11011111101111111
NAM  RNPH_CAUCR/157-224
ASQ  GQVAAVSCGVFNGV---...-.....---PV.-LDLDYEEDS.-NAEADSNFVLT..GVG.-----DIVEIQATG--.EKRGFTRAEFESLYGLAEKG
DSQ  GGCCAGGTGGCCGCCGTCTCGTGCGGCGTGTTCAACGGCGTG---------.........---...............---------CCGGTG...---CTGGACCTCGACTACGAGGAAGACAGC...---AACGCCGAGGCCGACAGCAACTTCGTCCTGACG......GGCGTGGGC...---------------GACATCGTCGAGATCCAGGCCACGGGC------...GAAAAGCGCGGCTTCACCCGCGCCGAGTTCGAAAGTCTCTACGGGCTGGCCGAGAAGGGG
TRN  11011111101111111
NAM  ECX1_ARCFU/157-225
ASQ  GMITSVAVGKADGQ---...-.....---LV.-LDPMKEEDN.-FGEADMPFAFL.iRNG.--KIESIALLQMDGR-.----MTRDEVKQAIELAKKG
DSQ  GGAATGATCACGTCCGTTGCGGTGGGGAAGGCTGACGGACAG---------.........---...............---------CTCGTC...---CTCGACCCAATGAAAGAGGAGGACAAT...---TTTGGTGAGGCCGACATGCCCTTCGCATTCCTC...atcAGAAACGGA...------AAGATTGAGTCCATTGCACTTCTCCAGATGGACGGCAGA---...------------ATGACGAGGGATGAGGTAAAGCAGGCGATTGAGCTTGCGAAGAAGGGA
TRN  10010101110011011
NAM  ECX1_METTH/157-222
ASQ  DMVVACAAGKVGDQ---...-.....---VV.-LDLSEEEDK.-EGQADVPVAIL..---.-PRTREITLLQSDG--.---NLTPEEFERALDLAVEG
DSQ  GACATGGTTGTTGCCTGTGCAGCAGGTAAGGTCGGTGATCAG---------.........---...............---------GTGGTC...---CTTGACCTCTCTGAGGAGGAGGACAAG...---GAGGGCCAGGCAGACGTACCGGTGGCGATACTC......---------...---CCGAGGACACGTGAAATCACACTGCTCCAGAGTGATGGA------...---------AACCTCACACCCGAGGAATTTGAAAGGGCACTTGACCTTGCAGTGGAGGGA
TRN  10010101100011011
NAM  O25812_HELPY/457-527
ASQ  DLVAGVAMGMVSEGQ--...-.....DHAIL.-SDISGLEDA.-EGDMDFKIAGN..LE-.-----GITAMQMDT--.KMSGIKLEILYQALLQAKEA
DSQ  GATTTAGTCGCTGGGGTGGCTATGGGCATGGTGAGCGAAGGGCAA------.........---...............GATCACGCTATTTTA...---AGCGATATTAGCGGCTTAGAAGACGCA...---GAAGGCGATATGGATTTTAAGATTGCTGGGAAT......TTAGAA---...---------------GGCATTACGGCCATGCAAATGGATACC------...AAAATGAGCGGTATCAAGCTAGAAATTTTATACCAAGCCTTACTCCAAGCCAAAGAAGCA
TRN  11011101111011010
NAM  O24288_PEA/589-665
ASQ  CSIAGIAMGLVLDTK--...EfggdgTPLIL.-SDITGSEDA.-SGDMDFKVAGN..ED-.-----GITAFQMDI--.KVAGITLPIMREALLQARDG
DSQ  TGCTCAATTGCTGGAATTGCTATGGGTTTGGTTCTTGATACCAAG------.........GAAtttggtggagatggaACTCCGCTTATTCTG...---TCTGACATAACTGGATCTGAAGATGCA...---TCTGGAGATATGGATTTTAAGGTTGCTGGGAAT......GAAGAT---...---------------GGCATAACTGCATTTCAGATGGACATT------...AAGGTTGCTGGAATTACTTTGCCCATAATGAGAGAAGCACTGCTACAGGCAAGAGACGGC
TRN  10010101100011001
NAM  PNP_BACSU/459-529
ASQ  APVAGIAMGLVKSGE--...-.....HYTVL.-TDIQGMEDA.-LGDMDFKVAGT..EK-.-----GVTALQMDI--.KIEGLSREILEEALQQAKKG
DSQ  GCGCCAGTTGCTGGTATTGCGATGGGTCTTGTCAAATCAGGCGAA------.........---...............CATTACACTGTCTTG...---ACTGACATCCAAGGCATGGAAGACGCG...---CTCGGAGATATGGACTTTAAAGTAGCGGGAACT......GAAAAA---...---------------GGCGTAACGGCCCTGCAAATGGACATT------...AAAATTGAAGGCCTTTCCAGAGAGATTCTTGAAGAAGCGCTTCAGCAGGCGAAAAAGGGC
TRN  10010101100011001
NAM  PNP_ECOLI/459-529
ASQ  AAVAGIAMGLVKEGD--...-.....NYVVL.-SDILGDEDH.-LGDMDFKVAGS..RD-.-----GISALQMDI--.KIEGITKEIMQVALNQAKGA
DSQ  GCTGCCGTTGCGGGTATCGCAATGGGTCTGGTGAAAGAAGGCGAC------.........---...............AACTACGTTGTACTG...---TCTGACATTTTGGGCGACGAAGATCAC...---CTGGGCGATATGGACTTCAAAGTTGCAGGTTCC......CGCGAC---...---------------GGTATCTCTGCACTGCAGATGGATATC------...AAAATTGAAGGTATCACCAAAGAGATCATGCAGGTTGCGCTGAACCAGGCTAAAGGTGCG
TRN  11011101101011011
NAM  P72659_SYNY3/470-540
ASQ  KPVSGAAMGLIKEGDE-...-.....-IRIL.-TDIQGIEDF.-LGDMDFKVAGT..DS-.-----GITALQMDM--.KIDGLSMEVVSKAIMQALPA
DSQ  AAACCCGTTAGTGGCGCCGCCATGGGTTTAATCAAGGAAGGGGATGAA---.........---...............---ATTCGCATTCTC...---ACCGACATTCAGGGCATTGAAGATTTC...---CTTGGCGACATGGATTTCAAAGTAGCTGGTACC......GATTCC---...---------------GGTATTACCGCCCTGCAAATGGATATG------...AAAATTGATGGTCTGAGCATGGAAGTGGTGTCCAAAGCCATTATGCAAGCTCTCCCCGCC
TRN  11011101101011010
NAM  O32966_MYCLE/501-579
ASQ  APVAGIAMGLVSDDV--...EfdggtERRFVtLTDILGAEDA.-FGDMDFKCAGT..KD-.-----FVTALQLDT--.KLDGIPSQVLAGALAQAKDA
DSQ  GCGCCGGTGGCTGGCATTGCTATGGGGCTGGTCTCCGACGATGTT------.........GAGtttgacggagggactGAGCGTCGTTTTGTCaccTTGACCGACATCCTGGGCGCCGAAGACGCC...---TTCGGCGACATGGATTTTAAATGCGCCGGTACC......AAGGAC---...---------------TTTGTCACCGCGCTGCAGCTCGATACC------...AAACTTGACGGTATTCCCTCCCAGGTGCTCGCGGGTGCGCTTGCGCAGGCCAAAGACGCC
TRN  11011101101011011
NAM  O25812_HELPY/143-212
ASQ  KSVSACRIARMDN----...-.....--EFI.-INPSASLLN.-QSSLDLFVSGT..---.K---ESLNMIEMRSLGqKLNALEEPLMLEALELAQKS
DSQ  AAAAGCGTGAGCGCTTGCAGGATCGCTAGGATGGATAAC------------.........---...............------GAATTTATC...---ATTAACCCTAGCGCAAGCCTTTTGAAT...---CAATCCAGTTTGGATTTGTTCGTGTCTGGAACG......---------...AAA---------GAGAGTTTGAACATGATAGAAATGCGCTCTTTGGGGcaaAAATTGAACGCTTTAGAAGAGCCTTTAATGTTAGAAGCTTTAGAATTGGCTCAAAAAAGT
TRN  10010101110011010
NAM  Q53597_STRAT/154-219
ASQ  GPYGGVRVALIRGQ---...-.....-WVAF.---PTHTELE.-DAVFDMVVAGRvlEDG.---DVAIMMVEAEA--.------TEKTVQLVKDGAEA
DSQ  GGCCCGTACGGCGGCGTCCGCGTCGCGCTGATCCGCGGCCAG---------.........---...............---TGGGTGGCCTTC...---------CCGACGCACACCGAGCTCGAG...---GACGCCGTCTTCGACATGGTCGTCGCGGGCCGCgtcctgGAGGACGGC...---------GACGTCGCGATCATGATGGTCGAGGCCGAGGCC------...------------------ACCGAGAAGACCGTCCAGCTCGTCAAGGACGGCGCCGAGGCC
TRN  11011111101111111
NAM  P72659_SYNY3/145-209
ASQ  GPMAAVRVGLVGDD---...-.....---FI.-INPTYREVH.-NGDLDLVVAGT..---.PA---GIVMVEAGA--.--NQLPEQDIIEAIDFGYEA
DSQ  GGTCCCATGGCCGCTGTGCGGGTAGGTTTAGTAGGGGATGAT---------.........---...............---------TTCATT...---ATTAATCCCACCTATCGGGAAGTCCAT...---AACGGAGATTTGGACCTGGTGGTGGCCGGTACC......---------...CCCGCC---------GGTATTGTCATGGTGGAAGCTGGGGCG------...------AACCAGTTGCCGGAACAGGACATCATCGAAGCAATTGATTTTGGCTATGAAGCA
TRN  11011111101111110
NAM  Q41370_SPIOL/220-284
ASQ  KPVAGVRVGLVGGK---...-.....---YI.-VNPTTNEME.-NSELDLVVAGT..---.DS---AILMIEG----.YCNFLPEEKLLEAVEVGQDA
DSQ  AAGCCAGTTGCTGGAGTCCGTGTTGGTCTTGTTGGGGGAAAG---------.........---...............---------TATATT...---GTAAACCCTACAACTAATGAGATGGAA...---AATTCTGAGTTGGATTTAGTAGTAGCAGGCACA......---------...GATAGC---------GCTATCCTGATGATAGAGGGC------------...TATTGCAATTTTCTCCCAGAAGAAAAGCTGCTGGAAGCTGTAGAAGTTGGACAGGATGCA
TRN  10010111100111010
NAM  PNP_BACSU/146-210
ASQ  GPIAGVTVGRIDDQ---...-.....---FI.-INPTVDQLE.-KSDINLVVAGT..---.KD---AINMVEAGA--.--DEVPEEIMLEAIMFGHEE
DSQ  GGACCGATTGCAGGGGTTACTGTCGGACGCATTGATGATCAA---------.........---...............---------TTTATC...---ATTAACCCGACAGTCGATCAGCTTGAA...---AAAAGCGATATCAATCTTGTCGTTGCCGGCACG......---------...AAAGAT---------GCGATTAACATGGTAGAAGCGGGAGCG------...------GACGAAGTTCCTGAGGAAATCATGCTTGAGGCCATTATGTTCGGCCATGAAGAG
TRN  11011101111011011
NAM  PNP_ECOLI/147-211
ASQ  GPIGAARVGYINDQ---...-.....---YV.-LNPTQDELK.-ESKLDLVVAGT..---.EA---AVLMVESEA--.--QLLSEDQMLGAVVFGHEQ
DSQ  GGCCCGATTGGTGCTGCCCGCGTAGGTTACATCAATGACCAG---------.........---...............---------TACGTA...---CTGAACCCGACTCAGGACGAGCTGAAA...---GAGAGCAAACTGGATCTGGTTGTTGCCGGTACT......---------...GAAGCC---------GCTGTACTGATGGTTGAATCTGAAGCT------...------CAACTGCTGAGCGAAGACCAGATGCTGGGCGCAGTAGTGTTCGGTCATGAACAA
TRN  11011101101011011
NAM  RRP41_YEAST/156-220
ASQ  DYISGISVGLYDT----...-.....--TPL.-LDTNSLEEN.AMSTVTLGVVG-..---.KSEKLSLLLVE-----.--DKIPLDRLENVLAIGIAG
DSQ  GATTACATAAGTGGTATATCCGTCGGGCTGTACGATACT------------.........---...............------ACCCCATTA...---TTAGATACCAATTCATTAGAAGAAAAT...GCTATGAGTACAGTGACACTAGGTGTGGTAGGG---......---------...AAGTCAGAAAAACTTTCTCTTTTATTGGTGGAA---------------...------GACAAAATTCCGTTAGATAGGTTAGAGAACGTTCTTGCCATCGGCATCGCAGGT
TRN  10010101100011000
NAM  RRP41_SCHPO/154-218
ASQ  DFVCCSTAGIVESD---...-.....---ML.-LDLNSLEES.ALSWLTVAVLGN..---.---IKKVVYMQLET--.---SMHLDYLESVMNMAIAG
DSQ  GATTTCGTTTGCTGTAGTACAGCTGGGATTGTTGAGTCTGAT---------.........---...............---------ATGCTG...---TTGGATTTAAACTCACTAGAGGAGTCA...GCTCTTTCATGGTTGACGGTTGCTGTTTTGGGGAAC......---------...---------ATAAAAAAGGTCGTATATATGCAGCTGGAAACT------...---------AGTATGCATTTGGATTATTTGGAGTCAGTAATGAATATGGCGATCGCTGGA
TRN  10010101100011000
NAM  EXOS4_CAEEL/150-215
ASQ  GIASAATCGVVDGK---...-.....---PI.-VDLTSREETdLLPRVTLATICG..---.---RDEVILVELQ---.--NRLHIDHLSTVMDAAKAT
DSQ  GGCATCGCATCTGCAGCGACGTGTGGTGTTGTCGATGGAAAA---------.........---...............---------CCAATT...---GTTGATCTTACTTCTAGAGAAGAAACTgatCTCCTTCCCAGAGTTACTCTCGCCACAATCTGCGGT......---------...---------CGTGACGAAGTGATTCTCGTGGAACTTCAA---------...------AATCGTCTTCACATTGATCATCTTTCCACAGTCATGGATGCAGCGAAAGCCACG
TRN  10010101110011011
//