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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF03467 - Smg4_UPF3)
FAM  PF03467
PID  Smg4_UPF3
DES  Smg-4/UPF3 family
IPR  IPR005120
ANO  6
ALN  224
AID  0.29913
APH  (Q9P3I2_NEUCR/29-192:0.78156,((YD33_SCHPO/4-163:1.07462,Q9FX10_ARATH/1-170:0.53668):0.25407,(Q20445_CAEEL/1-175:0.89775,Q9BZI8_HUMAN/36-204:0.56412):0.04019):0.18091,UPF3_YEAST/79-277:1.03344);
ATP  (Q9P3I2_NEUCR/29-192,((YD33_SCHPO/4-163,Q9FX10_ARATH/1-170),(Q20445_CAEEL/1-175,Q9BZI8_HUMAN/36-204)),UPF3_YEAST/79-277);
ATL  5.36334
DNO  6
DLN  672
DID  0.416418
DPH  ((YD33_SCHPO/4-163:0.64674,UPF3_YEAST/79-277:0.56634):0.15174,(Q9BZI8_HUMAN/36-204:0.41841,Q9P3I2_NEUCR/29-192:0.51510):0.13226,(Q9FX10_ARATH/1-170:0.54784,Q20445_CAEEL/1-175:0.50183):0.02547);
DTP  ((YD33_SCHPO/4-163,UPF3_YEAST/79-277),(Q9BZI8_HUMAN/36-204,Q9P3I2_NEUCR/29-192),(Q9FX10_ARATH/1-170,Q20445_CAEEL/1-175));
DTL  3.50573
RID  0.29913
RPH  (Q9P3I2_NEUCR/29-192:0.78156,((YD33_SCHPO/4-163:1.07462,Q9FX10_ARATH/1-170:0.53668):0.25407,(Q20445_CAEEL/1-175:0.89775,Q9BZI8_HUMAN/36-204:0.56412):0.04019):0.18091,UPF3_YEAST/79-277:1.03344);
RTP  (Q9P3I2_NEUCR/29-192,((YD33_SCHPO/4-163,Q9FX10_ARATH/1-170),(Q20445_CAEEL/1-175,Q9BZI8_HUMAN/36-204)),UPF3_YEAST/79-277);
RTL  5.36334
LNK  Q20445_CAEEL/1-175:Q20445:Z70780
LNK  Q9BZI8_HUMAN/36-204:Q9BZI8:AF318575
LNK  Q9FX10_ARATH/1-170:Q9FX10:AC015446
LNK  Q9P3I2_NEUCR/29-192:Q9P3I2:AL390091
LNK  UPF3_YEAST/79-277:P48412:L41153
LNK  YD33_SCHPO/4-163:Q10267:Z69729
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  UPF3_YEAST/79-277
ASQ  KSTENEGF-KLVIRLLPPNLTADEFFA----ILRDNNNDDGDKQDIQGKLKYSDWCFFEGHYSSKVFKNSTYSRCNFLFDNLSD--LEKCANF---IKTCKFIDNK------DNITIPDMKLSPYVKKFTQTSK---KDAALVGTIEEDEIFKTFMNSMK----QLNENDEYSFQDF-SVLKSLEKEFSKSIELENKIAERTERV-LTELVGTGDKVKNKNKKK
DSQ  AAATCAACCGAGAATGAAGGATTT---AAGCTTGTTATTAGATTGCTACCTCCAAATTTGACTGCAGATGAATTTTTTGCC------------ATCTTACGAGATAATAATAACGATGATGGTGATAAGCAAGATATCCAGGGTAAACTCAAGTACAGTGACTGGTGTTTTTTTGAAGGTCATTATTCTAGTAAAGTATTCAAAAACTCGACATATTCTCGGTGCAATTTCTTGTTCGACAACTTATCAGAC------TTGGAAAAATGCGCAAATTTC---------ATTAAAACTTGTAAATTCATTGATAATAAG------------------GATAATATTACAATTCCAGATATGAAACTGTCGCCCTACGTAAAGAAATTCACTCAAACATCAAAA---------AAGGATGCCGCGCTAGTAGGAACAATTGAAGAAGACGAAATTTTTAAAACATTTATGAATTCAATGAAA------------CAGCTGAATGAAAATGACGAGTACTCATTCCAAGATTTT---AGCGTATTGAAATCTTTAGAAAAAGAATTCTCAAAAAGCATAGAGTTAGAAAATAAAATAGCAGAAAGAACAGAAAGGGTG---TTAACAGAGCTGGTTGGAACTGGTGATAAGGTCAAGAATAAGAACAAAAAGAAG
TRN  10010101100011000
NAM  Q9P3I2_NEUCR/29-192
ASQ  TKPQSEGE-KVVVRRLPPLLTEEEFFK----ILGDE------------------WKVGHGKVDWFSYWPGKSS------QQKDDLLVLSQAVQNG-V----WEDAKESYNDPVLNLPPTVELSIH-KKIPS-DK--KRVDNRQGTIDQE---PEFMAFLE----SLANPDAHKTTDT--AGEPNAE----------ETSAKPEKVTTTPLV---EYLKEKKAQR
DSQ  ACCAAGCCTCAGTCCGAGGGCGAA---AAGGTGGTTGTCCGTCGACTTCCTCCCCTGCTAACCGAAGAAGAGTTCTTCAAA------------ATCCTCGGCGATGAA------------------------------------------------------TGGAAAGTCGGCCATGGCAAGGTTGACTGGTTTTCATACTGGCCTGGCAAGAGCTCC------------------CAGCAGAAAGATGACCTTTTAGTGCTCTCACAAGCTGTACAGAATGGC---GTT------------TGGGAGGACGCCAAGGAATCATACAACGACCCGGTCCTGAACCTGCCGCCCACAGTCGAGTTGTCGATTCAC---AAGAAGATCCCTAGC---GACAAG------AAAAGGGTGGATAACCGCCAAGGCACTATCGACCAGGAG---------CCTGAGTTTATGGCCTTTCTTGAG------------AGCCTTGCCAATCCCGATGCCCACAAGACTACAGATACC------GCCGGTGAACCGAATGCCGAG------------------------------GAAACATCAGCCAAGCCCGAAAAGGTCACCACCACGCCACTCGTC---------GAATATCTTAAGGAGAAGAAAGCACAGAGA
TRN  10010101100011000
NAM  YD33_SCHPO/4-163
ASQ  DISKKRLPCKVLVFNLPPTLPEQVFLQSINS-FLPHVE----------------WHRFSKGKATVGTRSELLSFAYLKFQS-ATAVQEFFRVYQGHT----FIDKK------NNTYRAIVTIAPY-QKIP-PSK--VKADSLEGSLEQD---PKFQEFKV----QR----ESYSQTA-SNDDVIEK----------------LQT-STPLL---QYLAEKKNAV
DSQ  GATATCTCAAAAAAACGATTACCATGCAAAGTCCTCGTTTTTAATTTACCACCAACTTTGCCTGAACAAGTGTTTCTCCAATCCATCAACTCA---TTTTTACCACACGTGGAA------------------------------------------------TGGCACCGATTCTCCAAAGGGAAAGCAACTGTTGGTACTCGATCTGAATTGCTATCCTTTGCGTATTTGAAGTTCCAATCC---GCCACGGCTGTTCAGGAATTTTTTCGCGTATACCAAGGACATACC------------TTCATAGATAAGAAG------------------AACAACACTTATAGGGCAATTGTCACAATTGCTCCATAT---CAAAAGATTCCT---CCTTCTAAA------GTAAAGGCAGATAGTTTAGAAGGCTCACTTGAACAAGAT---------CCGAAGTTTCAAGAATTCAAGGTT------------CAGCGG------------GAGAGCTATTCGCAAACTGCG---TCCAATGACGATGTTATTGAAAAA------------------------------------------------TTACAAACC---TCTACTCCATTACTA---------CAATATCTTGCTGAGAAAAAAAATGCCGTT
TRN  10010101110011000
NAM  Q20445_CAEEL/1-175
ASQ  MTDSKDGHVKVVLRRLPKYMTEHEVLEQISP-LPEEVI----------------GTYFH--PANFSFDRCAYATLTVNFSEYCDSMMEFERRFDGYI----FVDSR------GNDSAAVVEAASN-QNFAKCDRNRMKEDTRVGAILTD---KYYLDFCK----KLEEERAIPILTL---EQQIRK-----LNQPDDARTQIDKM-ETPLV---KYFFEKETGK
DSQ  ATGACCGATTCAAAAGACGGTCATGTGAAAGTCGTGTTGCGTCGTCTTCCAAAATACATGACGGAGCATGAAGTTCTTGAACAGATTAGTCCA---CTACCAGAAGAAGTCATT------------------------------------------------GGAACCTATTTTCAT------CCTGCTAACTTTTCGTTCGACCGATGTGCTTATGCAACGCTTACAGTAAATTTTTCCGAATACTGTGATTCAATGATGGAATTTGAACGGCGATTCGATGGATACATT------------TTTGTCGATTCTCGT------------------GGAAATGATTCTGCTGCAGTTGTTGAAGCTGCTTCCAAT---CAGAACTTTGCAAAATGTGATCGTAATCGAATGAAGGAAGATACACGTGTTGGAGCTATTCTCACTGAT---------AAATACTATTTGGATTTCTGTAAG------------AAGCTTGAAGAAGAAAGAGCTATTCCAATTCTGACTCTG---------GAACAACAAATTCGGAAA---------------CTTAATCAGCCTGATGATGCTAGAACTCAAATCGATAAAATG---GAAACACCACTTGTC---------AAGTATTTCTTCGAAAAAGAAACTGGAAAG
TRN  10010101100011001
NAM  Q9BZI8_HUMAN/36-204
ASQ  REEKRTALSKVVIRRLPPGLTKEQLEEQLRP-LPAHDY----------------FEFF---AADLSLYPHLYSRAYINFRNPDD-ILLFRDRFDGYI----FLDSK------GLEYPAVVEFAPF-QKIAK--KKLRKKDAKTGSIEDD---PEYKKFLETYCVEEEKTSANPETLL---GEMEAK-----------TRELIARR-TTPLL---EYIKNRKLEK
DSQ  CGCGAGGAGAAGAGGACGGCCCTGAGCAAGGTGGTCATCCGCCGCCTGCCTCCGGGCCTCACCAAGGAGCAGCTGGAGGAGCAGCTGCGCCCG---CTGCCAGCACACGACTAC------------------------------------------------TTCGAGTTCTTC---------GCCGCCGACCTGAGTCTTTATCCTCATCTCTACTCAAGAGCATACATTAATTTTAGGAATCCTGATGAC---ATCCTTCTTTTTAGAGATCGTTTTGATGGATATATC------------TTCCTTGACAGCAAA------------------GGCCTAGAATATCCTGCAGTGGTAGAGTTTGCTCCATTC---CAGAAGATAGCCAAA------AAGAAGCTGAGAAAAAAAGATGCCAAGACTGGAAGCATCGAAGATGAT---------CCAGAATATAAGAAGTTTTTAGAAACCTACTGTGTGGAGGAAGAGAAGACCAGTGCCAACCCTGAGACTCTGCTG---------GGGGAGATGGAGGCGAAG---------------------------------ACAAGAGAGCTCATTGCTAGAAGA---ACCACACCTCTTTTG---------GAATATATTAAAAATAGAAAATTAGAAAAG
TRN  10010101100011000
NAM  Q9FX10_ARATH/1-170
ASQ  MKEPLQKK-KVVVRHLPPSLSQSDLLSQIDPRFADRYN----------------WVSFR--PGKSSYKNQKYSRAYVSFKAPED-VYEFAAFFNGHV----FVNEK------GAQFKAIVEYAPS-QRVPKPSD---KKDPREGSISKD---PDYLEFLK----VI----AQPVENLPSAEIQLER-----REAEQSGASKAAPI-VTPLM---EFIRQKRATV
DSQ  ATGAAGGAACCTTTGCAGAAGAAG---AAGGTGGTTGTTCGTCACTTGCCGCCTTCTCTTTCACAGTCCGATCTCTTATCTCAAATTGATCCTCGTTTCGCTGATCGTTACAAT------------------------------------------------TGGGTTTCGTTTCGT------CCTGGGAAGTCCAGCTATAAAAATCAGAAGTATTCACGGGCCTATGTAAGTTTCAAGGCACCAGAAGAT---GTTTATGAGTTCGCTGCATTTTTCAACGGGCATGTG------------TTTGTTAATGAAAAG------------------GGTGCTCAGTTTAAGGCTATAGTTGAATATGCACCTTCT---CAGCGTGTTCCGAAACCGAGTGAT---------AAGAAAGATCCTCGTGAAGGGTCTATTAGTAAAGAT---------CCTGATTATCTTGAGTTTCTTAAG------------GTGATT------------GCACAACCTGTTGAGAATCTTCCTAGTGCTGAAATCCAGTTGGAAAGA---------------AGAGAAGCTGAGCAGTCTGGTGCTTCAAAAGCGGCTCCCATT---GTTACACCTCTTATG---------GAATTCATACGTCAAAAACGTGCCACTGTG
TRN  10010101110011000
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