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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF03229 - Alpha_GJ)
FAM  PF03229
PID  Alpha_GJ
DES  Alphavirus glycoprotein J
IPR  IPR004913
ANO  5
ALN  130
AID  0.685897
APH  (((VGLJ_CHV1/1-117:0.05520,Q9YTS0_CHV1/1-110:0.35613):0.06063,Q9YIW0_CHV1/1-121:0.09745):0.34443,O90631_CHV16/1-116:0.05737,Q69368_9ALPH/1-106:0.16148);
ATP  (((VGLJ_CHV1/1-117,Q9YTS0_CHV1/1-110),Q9YIW0_CHV1/1-121),O90631_CHV16/1-116,Q69368_9ALPH/1-106);
ATL  1.14601
DNO  5
DLN  390
DID  0.783085
DPH  (((VGLJ_CHV1/1-117:0.04617,Q9YIW0_CHV1/1-121:0.07253):0.04789,Q9YTS0_CHV1/1-110:0.15703):0.20200,O90631_CHV16/1-116:0.02262,Q69368_9ALPH/1-106:0.07599);
DTP  (((VGLJ_CHV1/1-117,Q9YIW0_CHV1/1-121),Q9YTS0_CHV1/1-110),O90631_CHV16/1-116,Q69368_9ALPH/1-106);
DTL  0.62423
RID  0.685897
RPH  (((VGLJ_CHV1/1-117:0.05520,Q9YTS0_CHV1/1-110:0.35613):0.06063,Q9YIW0_CHV1/1-121:0.09745):0.34443,O90631_CHV16/1-116:0.05737,Q69368_9ALPH/1-106:0.16148);
RTP  (((VGLJ_CHV1/1-117,Q9YTS0_CHV1/1-110),Q9YIW0_CHV1/1-121),O90631_CHV16/1-116,Q69368_9ALPH/1-106);
RTL  1.14601
LNK  O90631_CHV16/1-116:O90631:AF082809
LNK  Q69368_9ALPH/1-106:Q69368:AF449714
LNK  Q9YIW0_CHV1/1-121:Q9YIW0:AF083210
LNK  Q9YTS0_CHV1/1-110:Q9YTS0:AF082807
LNK  VGLJ_CHV1/1-117:P36344:S48101
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  Q69368_9ALPH/1-106
ASQ  MRSLPLVVGAWAAALVTNLLPGAALAG---DAAG-........ANATSTAAGSTIP..----ATAGAPPDHP-----TPWAFLQTDRALPLVIGGLCALTLAAMGAGAVLHRCCRR-CARRRQNVSSVSA
DSQ  ATGCGCTCTCTCCCGCTCGTCGTCGGCGCCTGGGCGGCCGCGCTGGTGACCAACCTCCTCCCCGGCGCCGCGCTCGCCGGC---------GACGCCGCCGGC---........................GCCAACGCGACATCCACCGCCGCGGGATCGACGATCCCC......------------GCGACCGCGGGCGCCCCGCCCGACCACCCC---------------ACGCCCTGGGCGTTTCTCCAGACGGACCGCGCCCTGCCCCTGGTGATCGGGGGCCTCTGCGCGCTGACCCTGGCCGCCATGGGCGCGGGGGCCGTCCTCCACCGGTGCTGCCGACGC---TGCGCGCGCCGCCGCCAGAACGTCTCCAGCGTGTCCGCG
TRN  11011111101111111
NAM  O90631_CHV16/1-116
ASQ  MRSLLFVVGAWVAALVTNLTPDAALASGTTTAADNtsatassgDNATSINAGSTI-..-----TAAAPPGHS-----TPWPSLPTDLALPLVIGGLCALTLAAMGAGALLHRCCRR-CARRRQNVSSVSA
DSQ  ATGCGCTCCCTCCTGTTCGTCGTCGGCGCCTGGGTGGCCGCGCTGGTGACCAACCTCACCCCCGACGCCGCGCTCGCCAGCGGCACCACCACCGCCGCCGACAACaccagcgcgaccgcctcctccggcGACAACGCGACATCGATCAACGCGGGATCGACGATT---......---------------ACCGCGGCCGCCCCGCCCGGGCACTCC---------------ACGCCCTGGCCGTCTCTCCCGACGGACCTCGCCCTGCCCCTGGTGATCGGGGGCCTCTGCGCGCTGACCCTGGCCGCCATGGGCGCGGGCGCCCTCCTCCACCGGTGCTGCCGACGC---TGCGCGCGGCGCCGCCAGAACGTCTCCAGCGTGTCCGCG
TRN  11011111101111111
NAM  Q9YIW0_CHV1/1-121
ASQ  MRSLLFVVGAWVAAAVTYLSPNAALATDTTPTVAA........ANSTTAN-STAATvaGTAAPTTGAPATNSTVVPETPGPFPPVDFALPAVIGGLCALTLAAMGAGALLHRCCRRAAARRRQRAAYVYA
DSQ  ATGCGGTCTCTTCTGTTCGTCGTCGGCGCGTGGGTGGCCGCGGCGGTGACCTACCTCAGCCCCAACGCCGCGCTCGCCACGGACACCACCCCCACCGTCGCCGCC........................GCCAACTCCACCACCGCCAAC---TCCACCGCCGCGACCgtagccGGCACGGCCGCCCCCACCACGGGGGCCCCCGCCACCAACTCGACGGTCGTGCCCGAGACTCCAGGCCCGTTTCCTCCCGTGGACTTCGCCCTCCCCGCGGTGATCGGGGGCCTCTGCGCGCTGACCCTGGCCGCCATGGGCGCCGGCGCCCTCCTGCACCGGTGCTGTAGACGCGCCGCCGCGCGGCGGCGCCAACGCGCCGCCTACGTCTACGCG
TRN  10010101100011011
NAM  VGLJ_CHV1/1-117
ASQ  MRSLLFVVGAWVAAAVTHLTPNAALATGTTPTVG-........ANSTADP-GTGAN..GTTVPAAGTPAN-STTAAETPAPFPPVDFALPVVIGGLCALTLAAMGAGALLHRCCRRAAARRRQRAAYVYA
DSQ  ATGCGGTCCCTTCTGTTCGTCGTCGGCGCGTGGGTGGCCGCTGCGGTGACCCACCTCACCCCCAACGCCGCGCTCGCCACGGGCACCACCCCCACCGTCGGC---........................GCCAACTCCACCGCCGACCCC---GGAACAGGCGCCAAC......GGCACGACCGTCCCTGCCGCGGGGACGCCGGCCAAC---TCGACGACCGCGGCCGAAACTCCCGCCCCGTTTCCTCCCGTGGACTTCGCCCTCCCCGTGGTGATCGGGGGCCTCTGCGCGCTGACCCTGGCCGCCATGGGCGCCGGCGCTCTCCTGCACCGGTGCTGCAGACGCGCCGCCGCGCGGCGGCGCCAGCGCGCCGCCTACGTATACGCG
TRN  10010101100011011
NAM  Q9YTS0_CHV1/1-110
ASQ  MRSLPFVVCAWVTAVVADLAAKAALATDPT-TVGA........ANVTAVPTSHGAN..--ATSADSTPAG------GTPGPYPSADFGLPLVIGGLCALTLAAMGAGALLQRCCRR-AARHRHRASYAYA
DSQ  ATGAGGTCCCTCCCGTTCGTCGTGTGCGCGTGGGTGACCGCGGTGGTGGCCGACCTCGCCGCGAAGGCCGCGCTCGCCACGGACCCCACC---ACCGTCGGTGCC........................GCCAACGTCACCGCCGTCCCCACATCCCACGGCGCCAAC......------GCGACGTCCGCCGACTCGACGCCGGCGGGC------------------GGGACGCCCGGCCCGTACCCCTCCGCGGACTTCGGCCTCCCCCTGGTCATCGGAGGCCTCTGCGCGCTGACCCTCGCCGCCATGGGCGCGGGCGCCCTCCTGCAGCGGTGCTGCCGACGC---GCCGCGCGGCACCGCCACCGCGCCTCCTACGCCTACGCG
TRN  10010101100011011
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