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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF03047 - ComC)
FAM  PF03047
PID  ComC
DES  COMC family
IPR  IPR004288
ANO  12
ALN  55
AID  0.477509
APH  ((((((CSP4_STRMT/1-40:0.29368,(CSP3_STRMT/1-40:0.09908,(CSP1_STRMT/1-41:0.14485,Q9WW44_STRPN/1-41:0.12732):0.16188):0.03019):0.07443,CSP2_STRMT/1-40:0.15964):0.24347,(O33617_STRCR/1-42:0.66585,(P72443_STRGN/1-50:0.07708,P72445_STRGN/1-50:0.21116):0.49358):0.22182):0.17960,CSP2_STROR/1-41:0.13129):0.18179,CSP_STROR/1-41:0.15155):1.02432,O33596_STRAP/1-48:0.17762,O33615_STRCV/1-48:0.08203);
ATP  ((((((CSP4_STRMT/1-40,(CSP3_STRMT/1-40,(CSP1_STRMT/1-41,Q9WW44_STRPN/1-41))),CSP2_STRMT/1-40),(O33617_STRCR/1-42,(P72443_STRGN/1-50,P72445_STRGN/1-50))),CSP2_STROR/1-41),CSP_STROR/1-41),O33596_STRAP/1-48,O33615_STRCV/1-48);
ATL  4.9444
DNO  12
DLN  165
DID  0.617384
DPH  (((O33617_STRCR/1-42:0.46236,(P72443_STRGN/1-50:0.00410,P72445_STRGN/1-50:0.16320):0.23536):0.11097,(O33596_STRAP/1-48:0.12509,O33615_STRCV/1-48:0.08359):0.40605):0.13908,((CSP2_STRMT/1-40:0.08410,(CSP4_STRMT/1-40:0.11031,CSP3_STRMT/1-40:0.04920):0.00000):0.04801,(Q9WW44_STRPN/1-41:0.07129,CSP1_STRMT/1-41:0.08577):0.06569):0.18930,(CSP2_STROR/1-41:0.07270,CSP_STROR/1-41:0.17985):0.11499);
DTP  (((O33617_STRCR/1-42,(P72443_STRGN/1-50,P72445_STRGN/1-50)),(O33596_STRAP/1-48,O33615_STRCV/1-48)),((CSP2_STRMT/1-40,(CSP4_STRMT/1-40,CSP3_STRMT/1-40)),(Q9WW44_STRPN/1-41,CSP1_STRMT/1-41)),(CSP2_STROR/1-41,CSP_STROR/1-41));
DTL  2.80102
RID  0.477509
RPH  ((((((CSP4_STRMT/1-40:0.29368,(CSP3_STRMT/1-40:0.09908,(CSP1_STRMT/1-41:0.14485,Q9WW44_STRPN/1-41:0.12732):0.16188):0.03019):0.07443,CSP2_STRMT/1-40:0.15964):0.24347,(O33617_STRCR/1-42:0.66585,(P72443_STRGN/1-50:0.07708,P72445_STRGN/1-50:0.21116):0.49358):0.22182):0.17960,CSP2_STROR/1-41:0.13129):0.18179,CSP_STROR/1-41:0.15155):1.02432,O33596_STRAP/1-48:0.17762,O33615_STRCV/1-48:0.08203);
RTP  ((((((CSP4_STRMT/1-40,(CSP3_STRMT/1-40,(CSP1_STRMT/1-41,Q9WW44_STRPN/1-41))),CSP2_STRMT/1-40),(O33617_STRCR/1-42,(P72443_STRGN/1-50,P72445_STRGN/1-50))),CSP2_STROR/1-41),CSP_STROR/1-41),O33596_STRAP/1-48,O33615_STRCV/1-48);
RTL  4.9444
LNK  CSP1_STRMT/1-41:O33672:AJ000871
LNK  CSP2_STRMT/1-40:O33666:AJ000865
LNK  CSP2_STROR/1-41:O33690:AJ000874
LNK  CSP3_STRMT/1-40:O33668:AJ000866
LNK  CSP4_STRMT/1-40:O33675:AJ000875
LNK  CSP_STROR/1-41:O33689:AJ000873
LNK  O33596_STRAP/1-48:O33596:AJ000864
LNK  O33615_STRCV/1-48:O33615:AJ000867
LNK  O33617_STRCR/1-42:O33617:AJ000876
LNK  P72443_STRGN/1-50:P72443:X98110
LNK  P72445_STRGN/1-50:P72445:X98109
LNK  Q9WW44_STRPN/1-41:Q9WW44:AJ240790
AMK  xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  O33615_STRCV/1-48
ASQ  MKKIFSKKeITKVEVESFKELTDEQLNKIVGGDSRIRMGFD-..-FSKLFGK---
DSQ  ATGAAAAAAATTTTTAGCAAAAAGgaaATAACTAAAGTGGAAGTTGAATCATTTAAAGAACTTACTGATGAACAGTTAAATAAAATTGTTGGTGGAGATAGTCGAATAAGAATGGGATTTGAT---......---TTTTCTAAACTTTTTGGTAAA---------
TRN  10010101110011000
NAM  O33596_STRAP/1-48
ASQ  MKKLFAKKeVVKKEVVEFKELNDEQLDKIIGGDSRIRMGFD-..-FSKLFGK---
DSQ  ATGAAAAAGTTGTTTGCTAAAAAAgagGTAGTAAAAAAGGAAGTTGTAGAATTTAAAGAACTGAATGATGAGCAGTTAGATAAAATCATTGGTGGGGATAGTCGAATCAGAATGGGATTTGAT---......---TTTTCAAAACTTTTTGGTAAA---------
TRN  10010101100011000
NAM  P72445_STRGN/1-50
ASQ  MKKKNKQN.LLPKELQQFEILTERKLEQVTGGDVRSNK---IrlWWENIFF-NKK
DSQ  ATGAAAAAGAAAAACAAACAAAAT...CTATTGCCAAAAGAGTTACAACAATTTGAAATTTTGACAGAAAGAAAATTAGAGCAAGTTACTGGTGGAGATGTTCGCTCAAACAAA---------ATTagattaTGGTGGGAAAATATATTCTTT---AATAAAAAA
TRN  10010101110011000
NAM  P72443_STRGN/1-50
ASQ  MKKKNKQN.LLPKELQQFEILTERKLEQVTGGDIRHRI---NnsIWRDIFL-KRK
DSQ  ATGAAAAAGAAAAACAAACAAAAT...CTATTGCCAAAAGAGTTACAACAATTTGAAATTTTGACAGAAAGAAAATTAGAGCAAGTTACTGGTGGAGATATTCGACATAGGATT---------AATaattcaATTTGGAGAGATATTTTTTTA---AAAAGAAAA
TRN  10010101110011000
NAM  O33617_STRCR/1-42
ASQ  MKNTQKN-.--FKTIAQFPVLNEKELKEVLGGDLRNIF----..-LKIKF--KKK
DSQ  ATGAAAAATACTCAGAAAAAC---...------TTTAAAACAATCGCTCAATTCCCAGTCTTGAATGAAAAAGAACTTAAAGAAGTTCTTGGAGGAGATTTAAGAAATATCTTC------------......---TTAAAAATTAAATTT------AAGAAAAAA
TRN  10010101110011010
NAM  CSP_STROR/1-41
ASQ  MKNTEK--.-----LEQFKEVTEAELQEIRGGDKRLPY----..FFKHLFSNRTK
DSQ  ATGAAAAATACAGAAAAG------...---------------TTGGAACAATTTAAAGAAGTAACAGAGGCAGAATTGCAGGAGATTCGAGGTGGAGATAAAAGACTACCTTAC------------......TTTTTTAAACATCTTTTTTCAAATAGGACAAAG
TRN  10010101110011001
NAM  CSP2_STROR/1-41
ASQ  MKNTVK--.-----LEQFKEVTEAELQEIRGGDWRISE----..TIRNLIFPRRK
DSQ  ATGAAAAATACAGTAAAG------...---------------TTGGAACAATTTAAAGAAGTAACAGAGGCAGAATTGCAGGAGATTCGAGGTGGAGATTGGAGAATTTCAGAA------------......ACAATTCGTAATCTTATTTTTCCAAGAAGAAAG
TRN  10010101110011001
NAM  CSP4_STRMT/1-40
ASQ  MKNTVN--.-----LDKFVELKEKDLQNIQGGEIRQTH---N..IFFNFF--KRR
DSQ  ATGAAAAACACAGTTAAT------...---------------TTAGATAAGTTTGTAGAATTGAAGGAAAAAGACTTGCAAAATATTCAAGGTGGGGAGATAAGGCAAACACAT---------AAT......ATTTTCTTTAATTTCTTT------AAAAGAAGA
TRN  10010101110011010
NAM  CSP3_STRMT/1-40
ASQ  MKNTVK--.-----LEQFVALKEKDLQKIQGGEMRKSN---N..NFFHFL--RRI
DSQ  ATGAAAAACACAGTTAAA------...---------------TTGGAACAGTTTGTAGCCTTGAAGGAAAAAGACTTGCAAAAAATTCAAGGTGGGGAGATGAGGAAATCAAAT---------AAT......AATTTCTTTCATTTCTTA------AGAAGAATA
TRN  10010101110011000
NAM  Q9WW44_STRPN/1-41
ASQ  MKNTVK--.-----LEQFVALKEKDLQNIKGGEMRISR----..IILDFLFLRKK
DSQ  ATGAAAAACACAGTTAAA------...---------------TTGGAACAGTTTGTAGCTTTGAAGGAAAAAGACTTACAAAATATTAAAGGTGGGGAGATGAGGATTTCAAGA------------......ATCATCCTTGATTTTCTTTTCCTACGAAAAAAG
TRN  10010101110011000
NAM  CSP1_STRMT/1-41
ASQ  MKNTVK--.-----LEQFVALKEKDLQKIKGGESRLPK----..IRFDFIFPRKK
DSQ  ATGAAAAACACAGTTAAA------...---------------TTGGAACAGTTTGTAGCCTTGAAGGAAAAAGACTTGCAAAAGATTAAAGGTGGGGAAAGTAGACTGCCAAAA------------......ATCCGATTTGATTTTATTTTCCCACGAAAAAAG
TRN  10010101100011011
NAM  CSP2_STRMT/1-40
ASQ  MKNTVK--.-----LEQFVALKEKELQKIKGGEMRKPD---G..ALFNLF--RRR
DSQ  ATGAAAAACACAGTTAAA------...---------------TTGGAACAGTTTGTAGCCTTGAAGGAAAAAGAATTGCAAAAGATTAAAGGTGGGGAGATGAGGAAACCAGAT---------GGT......GCTTTATTTAATTTATTT------AGAAGAAGA
TRN  10110101110011010
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