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PANDIT Protein and Associated NucleotideDomains with Inferred Trees

FAM  PF03017
PID  Transposase_23
DES  TNP1/EN/SPM transposase
IPR  IPR004264
ANO  14
ALN  77
AID  0.388547
APH  ((((((Q9SYE6_ARATH/107-179:0.32367,Q9XEB3_ARATH/262-334:0.26075):0.09997,Q9SI94_ARATH/268-340:0.31712):0.32417,(Q9SIC0_ARATH/292-362:0.59520,(Q9ZUQ3_ARATH/697-769:0.23605,O82334_ARATH/687-759:0.25441):0.14045):0.00000):0.29910,Q9SK21_ARATH/369-439:0.45561):0.13773,(((Q9SIL1_ARATH/688-760:0.14545,O82334_ARATH/463-535:0.21485):0.13443,(Q9SK21_ARATH/270-342:0.21015,Q9ZUQ3_ARATH/516-588:0.26033):0.16882):0.44304,Q9SI94_ARATH/157-231:0.51612):0.14608):0.63596,Q9ZUK5_ARATH/279-351:0.41063,Q9SI94_ARATH/59-131:0.20801);
ATP  ((((((Q9SYE6_ARATH/107-179,Q9XEB3_ARATH/262-334),Q9SI94_ARATH/268-340),(Q9SIC0_ARATH/292-362,(Q9ZUQ3_ARATH/697-769,O82334_ARATH/687-759))),Q9SK21_ARATH/369-439),(((Q9SIL1_ARATH/688-760,O82334_ARATH/463-535),(Q9SK21_ARATH/270-342,Q9ZUQ3_ARATH/516-588)),Q9SI94_ARATH/157-231)),Q9ZUK5_ARATH/279-351,Q9SI94_ARATH/59-131);
ATL  6.99233
DNO  14
DLN  231
DID  0.504239
DPH  ((Q9XEB3_ARATH/262-334:0.19443,((Q9SIC0_ARATH/292-362:0.37265,(Q9ZUQ3_ARATH/697-769:0.20465,O82334_ARATH/687-759:0.15610):0.16160):0.08414,((Q9SK21_ARATH/369-439:0.27589,(Q9ZUK5_ARATH/279-351:0.28293,Q9SI94_ARATH/59-131:0.13770):0.36236):0.12589,(Q9SI94_ARATH/157-231:0.39912,((Q9SIL1_ARATH/688-760:0.08610,O82334_ARATH/463-535:0.14414):0.06615,(Q9SK21_ARATH/270-342:0.11580,Q9ZUQ3_ARATH/516-588:0.14039):0.09251):0.22076):0.07859):0.20026):0.20236):0.04897,Q9SYE6_ARATH/107-179:0.27130,Q9SI94_ARATH/268-340:0.20691);
DTP  ((Q9XEB3_ARATH/262-334,((Q9SIC0_ARATH/292-362,(Q9ZUQ3_ARATH/697-769,O82334_ARATH/687-759)),((Q9SK21_ARATH/369-439,(Q9ZUK5_ARATH/279-351,Q9SI94_ARATH/59-131)),(Q9SI94_ARATH/157-231,((Q9SIL1_ARATH/688-760,O82334_ARATH/463-535),(Q9SK21_ARATH/270-342,Q9ZUQ3_ARATH/516-588)))))),Q9SYE6_ARATH/107-179,Q9SI94_ARATH/268-340);
DTL  4.6317
RID  0.388547
RPH  ((((((Q9SYE6_ARATH/107-179:0.32367,Q9XEB3_ARATH/262-334:0.26075):0.09997,Q9SI94_ARATH/268-340:0.31712):0.32417,(Q9SIC0_ARATH/292-362:0.59520,(Q9ZUQ3_ARATH/697-769:0.23605,O82334_ARATH/687-759:0.25441):0.14045):0.00000):0.29910,Q9SK21_ARATH/369-439:0.45561):0.13773,(((Q9SIL1_ARATH/688-760:0.14545,O82334_ARATH/463-535:0.21485):0.13443,(Q9SK21_ARATH/270-342:0.21015,Q9ZUQ3_ARATH/516-588:0.26033):0.16882):0.44304,Q9SI94_ARATH/157-231:0.51612):0.14608):0.63596,Q9ZUK5_ARATH/279-351:0.41063,Q9SI94_ARATH/59-131:0.20801);
RTP  ((((((Q9SYE6_ARATH/107-179,Q9XEB3_ARATH/262-334),Q9SI94_ARATH/268-340),(Q9SIC0_ARATH/292-362,(Q9ZUQ3_ARATH/697-769,O82334_ARATH/687-759))),Q9SK21_ARATH/369-439),(((Q9SIL1_ARATH/688-760,O82334_ARATH/463-535),(Q9SK21_ARATH/270-342,Q9ZUQ3_ARATH/516-588)),Q9SI94_ARATH/157-231)),Q9ZUK5_ARATH/279-351,Q9SI94_ARATH/59-131);
RTL  6.99233
LNK  O82334_ARATH/463-535:O82334:AC005957
LNK  O82334_ARATH/687-759:O82334:AC005957
LNK  Q9SI94_ARATH/157-231:Q9SI94:AC007187
LNK  Q9SI94_ARATH/268-340:Q9SI94:AC007187
LNK  Q9SI94_ARATH/59-131:Q9SI94:AC007187
LNK  Q9SIC0_ARATH/292-362:Q9SIC0:AC007170
LNK  Q9SIL1_ARATH/688-760:Q9SIL1:AC007112
LNK  Q9SK21_ARATH/270-342:Q9SK21:AC006586
LNK  Q9SK21_ARATH/369-439:Q9SK21:AC006586
LNK  Q9SYE6_ARATH/107-179:Q9SYE6:AC006267
LNK  Q9XEB3_ARATH/262-334:Q9XEB3:AF074021
LNK  Q9ZUK5_ARATH/279-351:Q9ZUK5:AC005957
LNK  Q9ZUQ3_ARATH/516-588:Q9ZUQ3:AC005897
LNK  Q9ZUQ3_ARATH/697-769:Q9ZUQ3:AC005897
AMK  xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  Q9ZUQ3_ARATH/516-588
ASQ  RRTNPKCLLV-NWSGP.-EDIIGEGRILSSDPDDVV-NDCRLGPVDLKVLVEAANTPDAFLWRPAPNMYTITEAVGQ
DSQ  AGAAGAACAAACCCAAAATGTCTGTTGGTT---AATTGGTCTGGTCCT...---GAGGATATCATTGGTGAGGGGCGAATTCTTTCTTCTGATCCTGATGACGTGGTT---AATGACTGTCGTCTAGGCCCTGTGGACTTGAAGGTGTTGGTTGAAGCTGCTAATACACCAGATGCATTTCTATGGCGACCTGCACCTAACATGTATACTATCACGGAAGCTGTTGGACAG
TRN  10010101100011011
NAM  Q9SK21_ARATH/270-342
ASQ  RKSHRKCVFV-DWSET.-DENVGEGRILSSDPDDIV-NDCRLGPTDLKVLVETAYQPDAFLWRPAHKIFNMKEAVGH
DSQ  AGAAAATCACATCGTAAGTGTGTGTTTGTT---GATTGGTCTGAGACT...---GATGAAAATGTTGGTGAGGGTCGTATTCTTTCTTCAGATCCTGATGATATAGTG---AATGATTGTCGTCTAGGCCCTACGGACCTGAAAGTGTTAGTTGAAACTGCATATCAACCAGATGCATTTCTATGGAGACCTGCACACAAGATCTTTAATATGAAAGAAGCTGTTGGACAT
TRN  10010101100011000
NAM  O82334_ARATH/463-535
ASQ  QGSQPKCILM-DWAGT.-DATVVEGCIISSDPDEIV-NGSRLGPTDVKVLIDTAIVPEAYLWRPAINMEIMEKAVGQ
DSQ  CAAGGATCACAACCTAAGTGTATCTTGATG---GATTGGGCTGGTACT...---GATGCAACCGTTGTTGAGGGTTGTATTATATCTTCTGATCCGGATGAGATAGTC---AATGGAAGTCGCTTAGGTCCTACAGATGTTAAAGTATTGATTGACACTGCGATTGTACCAGAAGCATACCTTTGGAGACCCGCAATTAACATGGAAATTATGGAGAAAGCTGTTGGTCAG
TRN  10010101110011000
NAM  Q9SIL1_ARATH/688-760
ASQ  KRTQPKCFLL-DWAGS.-YAKVAEGCIISSDPGELV-NDCRLGPTDVKVLIDTVIEPEAFLWRPAANMFTIEKAVGH
DSQ  AAAAGAACACAACCAAAATGTTTCTTACTT---GATTGGGCTGGTTCT...---TATGCAAAAGTTGCTGAGGGATGTATTATTTCTTCTGATCCGGGTGAATTAGTG---AATGACTGTCGCTTAGGCCCTACGGATGTTAAAGTCTTGATTGACACTGTTATTGAACCAGAAGCATTCCTTTGGAGACCTGCGGCTAATATGTTCACCATTGAGAAAGCTGTTGGACAT
TRN  10010101110011010
NAM  Q9SI94_ARATH/157-231
ASQ  SSAPPDRILIFDWNVE.-DLIVAEGHLISSDPKELLANNIPLGPNAALVKVDKIFHKDAYLWRPTSEMILMGDALHE
DSQ  TCATCGGCACCACCTGATAGAATCCTCATCTTTGATTGGAATGTGGAG...---GATCTAATAGTTGCTGAGGGCCATTTGATTTCATCTGATCCAAAAGAACTGCTTGCCAACAATATTCCTCTAGGTCCCAATGCTGCACTCGTTAAAGTTGACAAGATTTTTCATAAAGATGCTTATTTGTGGAGACCTACTAGTGAAATGATATTGATGGGTGATGCACTTCATGAG
TRN  10010101100011001
NAM  O82334_ARATH/687-759
ASQ  LKANQKCKLM-DISGK.-KRVVGAGRVHSIDPDQKV-HHVRLGENAARVWVDVVNVDDTAVWRPSDEIEYMRDSLGS
DSQ  TTGAAGGCTAATCAGAAGTGCAAGTTAATG---GATATAAGTGGAAAG...---AAGCGGGTGGTTGGTGCAGGACGAGTGCATTCAATAGACCCAGATCAAAAGGTA---CACCATGTTCGTTTGGGAGAGAATGCAGCTAGAGTTTGGGTAGATGTAGTGAATGTAGATGATACAGCAGTCTGGAGGCCATCAGATGAAATCGAGTATATGAGAGATTCACTTGGTTCA
TRN  10010101110011000
NAM  Q9ZUQ3_ARATH/697-769
ASQ  SKENMKCKLM-DITGK.-KRVVAEGRWATNDPKQKV-HFVPLGDNVVKVWVDIVKVSDVKVWRPSDEVEIMEDALGT
DSQ  TCTAAGGAAAATATGAAGTGCAAGTTGATG---GATATTACCGGAAAG...---AAACGAGTTGTGGCGGAAGGACGTTGGGCAACAAACGATCCAAAACAGAAGGTT---CACTTTGTTCCATTGGGTGATAATGTAGTTAAAGTGTGGGTCGATATTGTGAAAGTAAGCGATGTAAAAGTGTGGAGGCCATCAGATGAAGTCGAGATCATGGAAGATGCACTTGGCACA
TRN  10010101110011001
NAM  Q9SIC0_ARATH/292-362
ASQ  RKVSE------DIRTVlWKSIEARFALDQPLYSDQCVHHVPLGPNACRVWVDVVIVKDAAVWRQSTEIEYMEDALGT
DSQ  AGGAAAGTTAGTGAA------------------GATATCAGAACTGTCttgTGGAAATCCATTGAGGCAAGGTTTGCTCTTGATCAGCCACTTTATTCTGATCAATGTGTACATCACGTTCCTTTGGGGCCTAATGCTTGTCGAGTATGGGTGGATGTTGTGATTGTTAAAGATGCTGCAGTTTGGAGGCAATCTACTGAAATTGAGTATATGGAAGATGCACTTGGAACT
TRN  10010101110011011
NAM  Q9XEB3_ARATH/262-334
ASQ  KGSKQKCFLL-DIDNS.-GKKVAVGRVSSIDPAEKV-HHVPLGSNASKVWVEVSKVDGARVWRPNSEVTFIADAVGT
DSQ  AAAGGTTCGAAACAGAAGTGCTTTCTATTA---GATATTGATAACTCT...---GGGAAGAAAGTTGCAGTAGGTCGTGTGTCTTCAATTGATCCAGCAGAGAAGGTC---CATCACGTCCCTTTAGGTTCCAACGCTAGCAAGGTCTGGGTAGAGGTTTCCAAGGTTGATGGTGCACGAGTGTGGAGGCCAAATTCCGAAGTTACATTCATAGCTGATGCAGTAGGAACC
TRN  10010101110011000
NAM  Q9SYE6_ARATH/107-179
ASQ  KSAKKKCIML-DYKNG.-RERVAEGRVCTSNPSDTV-HHMPLGPNASKVCVEVSKIGDAAVWRPNSEIQTIADAVIN
DSQ  AAATCTGCGAAGAAGAAATGCATCATGTTA---GATTACAAGAACGGG...---AGAGAAAGAGTAGCAGAAGGAAGAGTATGTACCTCTAACCCTTCAGACACAGTC---CATCATATGCCCCTAGGTCCAAATGCGAGCAAGGTATGTGTAGAAGTTTCAAAGATTGGAGATGCTGCTGTGTGGAGACCAAACTCTGAAATTCAAACAATTGCAGATGCAGTGATCAAT
TRN  10010101110011000
NAM  Q9SI94_ARATH/268-340
ASQ  SNDQRKRLLL-DCNGS.-GEIVAEGRICSTNPEDKV-HFVPLGPDASKVWVQVLKIGSAKVWRPNSEVHFVGDALGT
DSQ  TCAAATGACCAAAGAAAGCGCTTGTTGTTA---GATTGCAATGGCTCT...---GGAGAAATCGTTGCAGAAGGCAGAATATGTTCAACTAATCCGGAAGATAAGGTA---CATTTCGTCCCTTTAGGACCTGATGCTAGCAAGGTATGGGTACAAGTTTTAAAGATCGGAAGTGCGAAAGTGTGGAGACCAAATTCAGAGGTTCATTTTGTTGGTGATGCTTTGGGAACT
TRN  10010101110011000
NAM  Q9SK21_ARATH/369-439
ASQ  --KGNKCKLL-DLKNA.-EVIVAEGRWETQEPSALV-NGLPLGPKAVKVFVDSVKQPDTSLWRPTAEISYLEDCLMA
DSQ  ------AAAGGAAACAAATGTAAACTATTG---GATTTGAAGAATGCT...---GAAGTCATTGTTGCAGAGGGGCGTTGGGAGACTCAAGAACCAAGTGCATTGGTT---AATGGACTTCCTCTTGGACCAAAAGCAGTTAAAGTATTTGTGGATTCAGTAAAGCAGCCTGATACATCACTATGGAGACCTACAGCTGAAATATCATATCTTGAGGACTGTTTGATGGCT
TRN  10010101110011001
NAM  Q9SI94_ARATH/59-131
ASQ  SKVVTRCQLL-DWCSN.EDIIVGEGEFCSAERTYKI-GRIPL-KNAAVVIVNFVSKEDAPVWRPTATIFSLGNAMGT
DSQ  AGCAAAGTTGTAACTAGATGTCAACTACTG---GATTGGTGTTCAAAT...GAAGATATCATTGTCGGGGAAGGAGAGTTTTGCTCGGCTGAACGAACATACAAGATT---GGTCGCATTCCGCTT---AAAAATGCAGCCGTTGTTATTGTCAACTTTGTATCAAAAGAAGATGCACCAGTCTGGAGGCCAACAGCAACAATTTTCTCACTTGGAAATGCTATGGGCACT
TRN  10010101100011001
NAM  Q9ZUK5_ARATH/279-351
ASQ  SGLAAK-KLL-DWCSD.DDVVVGEGEFCSAKQMYKI-GRIPLGRNVAAVIAKSVLDATASLWRPTPSVFTLGEALRN
DSQ  AGTGGCTTAGCTGCCAAA---AAGCTACTT---GATTGGTGTTCAGAT...GATGATGTTGTTGTAGGTGAAGGAGAATTCTGCTCTGCTAAACAAATGTACAAGATT---GGTCGTATTCCACTTGGACGTAATGTTGCGGCTGTTATTGCGAAGTCAGTGTTAGACGCCACAGCTTCTTTGTGGAGGCCTACACCATCAGTTTTCACACTTGGTGAAGCTTTAAGGAAC
TRN  10010101110011000
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