pandit
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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
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FAM PF02991
PID MAP1_LC3
DES Microtubule associated protein 1A/1B, light chain 3
IPR IPR004241
ANO 10
ALN 117
AID 0.516675
APH (((Q9VEG5_DROME/15-118:0.18283,LGG1_CAEEL/13-116:0.07345):0.27465,(GBRL2_RAT/13-116:0.27066,((MP3B_RAT/14-119:0.30200,LGG2_CAEEL/25-130:0.27267):0.61439,Q9SQU5_ARATH/26-129:0.36275):0.17557):0.03824):0.18773,(O80708_ARATH/14-128:0.12971,O23496_ARATH/1-102:0.39015):0.02408,(SYRP_LACBI/13-116:0.11886,APG8_YEAST/13-116:0.13561):0.04392);
ATP (((Q9VEG5_DROME/15-118,LGG1_CAEEL/13-116),(GBRL2_RAT/13-116,((MP3B_RAT/14-119,LGG2_CAEEL/25-130),Q9SQU5_ARATH/26-129))),(O80708_ARATH/14-128,O23496_ARATH/1-102),(SYRP_LACBI/13-116,APG8_YEAST/13-116));
ATL 3.59727
DNO 9
DLN 351
DID 0.545444
DPH (Q9SQU5_ARATH/26-129:0.25075,(((LGG1_CAEEL/13-116:0.12962,Q9VEG5_DROME/15-118:0.24833):0.20611,GBRL2_RAT/13-116:0.23914):0.04740,(APG8_YEAST/13-116:0.32363,(O80708_ARATH/14-128:0.13749,O23496_ARATH/1-102:0.31865):0.05194):0.12630):0.08801,(MP3B_RAT/14-119:0.25130,LGG2_CAEEL/25-130:0.38876):0.34666);
DTP (Q9SQU5_ARATH/26-129,(((LGG1_CAEEL/13-116,Q9VEG5_DROME/15-118),GBRL2_RAT/13-116),(APG8_YEAST/13-116,(O80708_ARATH/14-128,O23496_ARATH/1-102))),(MP3B_RAT/14-119,LGG2_CAEEL/25-130));
DTL 3.15409
RID 0.495403
RPH (((((O23496_ARATH/1-102:0.39399,O80708_ARATH/14-128:0.12411):0.03519,APG8_YEAST/13-116:0.17480):0.13535,((LGG1_CAEEL/13-116:0.07561,Q9VEG5_DROME/15-118:0.17958):0.25590,GBRL2_RAT/13-116:0.29627):0.05162):0.19372,Q9SQU5_ARATH/26-129:0.32329):0.65331,MP3B_RAT/14-119:0.30450,LGG2_CAEEL/25-130:0.27221);
RTP (((((O23496_ARATH/1-102,O80708_ARATH/14-128),APG8_YEAST/13-116),((LGG1_CAEEL/13-116,Q9VEG5_DROME/15-118),GBRL2_RAT/13-116)),Q9SQU5_ARATH/26-129),MP3B_RAT/14-119,LGG2_CAEEL/25-130);
RTL 3.46299
LNK APG8_YEAST/13-116:P38182:X79489
LNK GBRL2_RAT/13-116:P60522:AB003515
LNK LGG1_CAEEL/13-116:Q09490:AF326943
LNK LGG2_CAEEL/25-130:Q23536:Z69385
LNK MP3B_RAT/14-119:Q62625:U05784
LNK O23496_ARATH/1-102:O23496:Z97341
LNK O80708_ARATH/14-128:O80708:AC004392
LNK Q9SQU5_ARATH/26-129:Q9SQU5:AC011623
LNK Q9VEG5_DROME/15-118:Q9VEG5:AE003719
LNK SYRP_LACBI/13-116:P87068:
AMK xxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM Q9SQU5_ARATH/26-129
ASQ ERLKESNNIIAKYPDRIP...........VIIEKYSNAD-LPDMEKNKYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHN-TLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG
DSQ GAGAGATTGAAGGAGTCGAACAACATCATTGCGAAATATCCAGATAGAATACCT.................................GTGATCATTGAGAAATATTCAAACGCAGAT---CTGCCAGACATGGAGAAGAACAAATACTTGGTCCCACGAGACATGACTGTTGGACATTTCATCCATATGCTAAGCAAAAGGATGCAGTTAGATCCATCCAAAGCTCTCTTTGTTTTCGTACACAAC---ACTCTTCCTCAAACCGCTAGTCGCATGGACTCTCTCTACAATACTTTCAAGGAAGAAGACGGGTTCTTGTACATGTGCTACAGCACCGAGAAAACTTTCGGC
TRN 10010101100011000
NAM O23496_ARATH/1-102
ASQ KRRAEAARIREKYPDRIP...........VIVEKAEKSD-IPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPAGKQIDLLCIQ--DSGVSLSFNTSNKSIRR
DSQ AAGAGAAGGGCAGAGGCTGCTAGGATTAGAGAGAAGTATCCTGATAGGATTCCG.................................GTGATTGTTGAGAAGGCTGAGAAGAGTGAT---ATACCAACCATCGACAAGAAAAAGTACCTAGTCCCGGCTGATCTGACTGTGGGGCAGTTTGTGTATGTCATTCGCAAAAGAATCAAATTGAGTGCAGAAAAGGCTATCTTCATATTCGTGGACAAT---GTTCTTCCTCCAGCAGGTAAACAGATAGATCTCCTCTGTATTCAA------GACTCAGGAGTTTCATTATCTTTTAACACAAGTAACAAGAGCATAAGAAGG
TRN 10010101100011000
NAM O80708_ARATH/14-128
ASQ RRQIESSRIREKYPDRIPvmfssiyvplcVIVERAERSD-VPNIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKN-TLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG
DSQ AGGAGACAAATTGAATCTTCTCGCATCAGGGAGAAGTATCCAGACAGAATTCCAgtaatgttttccagcatttatgtacctctctgtGTGATCGTAGAGAGAGCTGAAAGAAGTGAT---GTTCCCAATATCGACAAGAAGAAGTACCTTGTTCCAGCTGATCTAACTGTTGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGCTGAGTGCCGAAAAGGCTATCTTCGTCTTTGTGAAGAAC---ACATTGCCTCCAACTGCTGCAATGATGTCTGCAATCTATGATGAGAACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAGAACACCTTTGGT
TRN 10010101100011011
NAM APG8_YEAST/13-116
ASQ KRKAESERIADRFKNRIP...........VICEKAEKSD-IPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVND-TLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG
DSQ AAAAGGAAGGCGGAGTCGGAGAGGATTGCTGACAGGTTCAAGAATAGGATACCT.................................GTGATTTGCGAAAAAGCTGAAAAGTCAGAT---ATTCCAGAGATTGATAAGCGTAAATATCTAGTTCCTGCTGACCTTACCGTAGGGCAATTTGTTTATGTTATAAGAAAGAGAATTATGCTACCCCCTGAGAAGGCCATCTTCATTTTTGTCAATGAT---ACTTTGCCACCTACTGCGGCGTTGATGTCTGCCATATATCAAGAACACAAGGATAAGGACGGGTTTTTGTATGTCACTTACTCAGGAGAAAATACATTTGGC
TRN 10010101110011001
NAM SYRP_LACBI/13-116
ASQ KRKAEAERIRQKYPDRIP...........VICEKADRTD-IPTIDKKKYLVPSDLTVGQFVYVIRKRIKLAPEKAIFIFVDE-VLPPTAALMSAIYEEHKDEDNFLYVSYSGENTFG
NAM GBRL2_RAT/13-116
ASQ HRCVESAKIRAKYPDRVP...........VIVEKVSGSQ-IVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDK-TVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG
DSQ CACAGATGCGTGGAATCCGCGAAGATCAGAGCGAAATACCCCGACCGGGTTCCG.................................GTGATCGTTGAGAAAGTCTCTGGCTCTCAG---ATTGTTGACATTGACAAGAGGAAGTACTTGGTCCCATCTGACATCACTGTGGCTCAGTTCATGTGGATCATCAGGAAAAGGATCCAGCTTCCTTCTGAGAAGGCCATCTTCTTGTTTGTGGACAAG---ACAGTCCCACAGTCCAGCCTAACTATGGGACAGCTTTACGAGAAGGAAAAAGATGAAGATGGATTCTTGTATGTGGCCTACAGCGGAGAGAACACTTTTGGC
TRN 10010101110011011
NAM Q9VEG5_DROME/15-118
ASQ KRRNEGDKIRRKYPDRVP...........VIVEKAPKTR-YAELDKKKYLVPADLTVGQFYFLIRKRINLRPDDALFFFVNN-VIPPTSATMGALYQEHFDKDYFLYISYTDENVYG
DSQ AAGCGCCGCAACGAAGGCGACAAGATCCGGCGCAAGTATCCGGACCGTGTGCCC.................................GTCATCGTGGAAAAGGCGCCGAAGACGCGT---TACGCGGAGCTGGACAAGAAGAAGTACCTGGTGCCGGCGGACCTGACAGTGGGCCAGTTCTACTTTCTCATCCGCAAGCGTATCAATCTGCGTCCCGACGACGCCCTCTTCTTCTTCGTAAACAAT---GTGATCCCACCGACATCGGCCACCATGGGTGCACTGTACCAGGAGCACTTCGACAAGGACTACTTCCTCTACATTTCCTATACCGATGAGAACGTCTATGGA
TRN 11011111101111111
NAM LGG1_CAEEL/13-116
ASQ KRRAEGDKIRRKYPDRIP...........VIVEKAPKSK-LHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNN-VIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG
DSQ AAGCGTCGTGCCGAAGGAGACAAGATCCGCAGAAAGTACCCAGACCGTATTCCA.................................GTGATTGTTGAGAAAGCACCAAAGTCAAAG---CTCCATGACTTGGATAAGAAGAAGTACTTGGTCCCATCCGATCTTACTGTTGGACAGTTCTACTTCCTCATCAGAAAACGCATCCAACTTCGTCCAGAAGATGCTCTGTTCTTCTTTGTCAACAAT---GTCATTCCACAAACCATGACCACAATGGGACAACTCTACCAGGACCATCACGAGGAAGACTTGTTCCTTTACATCGCCTACAGTGACGAAAGTGTGTATGGA
TRN 10010101100011001
NAM LGG2_CAEEL/25-130
ASQ ERQKDVEEIRSQQPNKVP...........VIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG
DSQ GAGCGTCAGAAAGATGTGGAAGAAATCCGCAGCCAACAACCGAACAAGGTTCCG.................................GTAATTATCGAAAGATTTGATGGAGAACGCAGTTTACCACTTATGGATCGCTGCAAATTCCTAGTACCCGAGCATATAACCGTTGCCGAGCTCATGTCAATTGTTAGACGACGCCTCCAACTTCATCCACAACAAGCATTCTTCCTGCTCGTCAATGAACGCTCAATGGTGTCAAATTCTATGAGCATGTCCAATTTGTACAGTCAAGAGCGTGATCCAGATGGCTTTGTGTATATGGTTTACACGTCTCAACCAGCATTTGGA
TRN 10010101100011000
NAM MP3B_RAT/14-119
ASQ QRVEDVRLIREQHPTKIP...........VIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG
DSQ CAAAGAGTGGAAGATGTCCGGCTCATCCGGGAGCAGCACCCCACCAAGATCCCA.................................GTGATTATAGAGCGATACAAGGGTGAGAAGCAGCTGCCCGTCCTGGACAAGACCAAGTTCCTTGTACCTGATCACGTGAATATGAGCGAACTCATCAAGATAATTAGAAGGCGCCTGCAGCTCAATGCTAACCAAGCCTTCTTCCTCCTGGTGAATGGGCACAGCATGGTGAGTGTGTCCACACCCATCTCTGAAGTGTACGAGAGCGAGAGAGATGAAGACGGCTTCCTGTACATGGTCTATGCCTCCCAGGAGACGTTCGGG
TRN 10010101100011011
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