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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF02933 - CDC48_2)
FAM  PF02933
PID  CDC48_2
DES  Cell division protein 48 (CDC48), domain 2
IPR  IPR004201
ANO  18
ALN  111
AID  0.233026
APH  (((Q9V2X2_PYRKO/100-199:0.85015,(((SEC18_CANAL/142-230:0.65005,SEC18_YEAST/120-206:0.39411):0.18740,(O88960_RAT/32-119:0.11260,((Q9U4Y6_MANSE/98-185:0.24372,NSF_CAEEL/161-249:0.82951):0.18419,(NSF1_DROME/98-185:0.01184,NSF2_DROME/104-190:0.24247):0.26474):0.49406):0.91064):3.10778,O27676_METTH/96-191:0.00000):0.63387):0.31383,Y1156_METJA/91-168:0.39163):0.08211,((Q9Y910_AERPE/64-140:0.88267,((CDCH_HALSA/91-179:0.65466,O28182_ARCFU/94-186:0.59904):0.37345,VAT_THEAC/94-181:0.60715):0.09455):0.11588,(Q9YC86_AERPE/95-172:0.17260,SAV_SULAC/125-203:0.45619):0.28961):0.00000,(Y1297_ARCFU/96-172:0.51952,Q9V1N2_PYRAB/94-171:0.28429):0.17938);
ATP  (((Q9V2X2_PYRKO/100-199,(((SEC18_CANAL/142-230,SEC18_YEAST/120-206),(O88960_RAT/32-119,((Q9U4Y6_MANSE/98-185,NSF_CAEEL/161-249),(NSF1_DROME/98-185,NSF2_DROME/104-190)))),O27676_METTH/96-191)),Y1156_METJA/91-168),((Q9Y910_AERPE/64-140,((CDCH_HALSA/91-179,O28182_ARCFU/94-186),VAT_THEAC/94-181)),(Q9YC86_AERPE/95-172,SAV_SULAC/125-203)),(Y1297_ARCFU/96-172,Q9V1N2_PYRAB/94-171));
ATL  15.1337
DNO  18
DLN  333
DID  0.381396
DPH  (((((((((VAT_THEAC/94-181:0.45377,(((SAV_SULAC/125-203:0.36731,Y1156_METJA/91-168:0.34404):0.25491,Q9YC86_AERPE/95-172:0.21426):0.09869,(Y1297_ARCFU/96-172:0.37314,Q9V1N2_PYRAB/94-171:0.25274):0.09027):0.12265):0.07823,(CDCH_HALSA/91-179:0.41430,O28182_ARCFU/94-186:0.40430):0.09434):0.00313,Q9Y910_AERPE/64-140:0.51367):0.23295,(O27676_METTH/96-191:0.48556,Q9V2X2_PYRKO/100-199:0.31073):0.03285):27.81850,(SEC18_CANAL/142-230:0.57209,SEC18_YEAST/120-206:0.26347):0.00609):0.69595,O88960_RAT/32-119:0.17183):0.24529,NSF_CAEEL/161-249:0.64510):0.12698,Q9U4Y6_MANSE/98-185:0.36808):0.13996,NSF1_DROME/98-185:0.16544,NSF2_DROME/104-190:0.11784);
DTP  (((((((((VAT_THEAC/94-181,(((SAV_SULAC/125-203,Y1156_METJA/91-168),Q9YC86_AERPE/95-172),(Y1297_ARCFU/96-172,Q9V1N2_PYRAB/94-171))),(CDCH_HALSA/91-179,O28182_ARCFU/94-186)),Q9Y910_AERPE/64-140),(O27676_METTH/96-191,Q9V2X2_PYRKO/100-199)),(SEC18_CANAL/142-230,SEC18_YEAST/120-206)),O88960_RAT/32-119),NSF_CAEEL/161-249),Q9U4Y6_MANSE/98-185),NSF1_DROME/98-185,NSF2_DROME/104-190);
DTL  9.80284
RID  0.233026
RPH  (((Q9V2X2_PYRKO/100-199:0.85015,(((SEC18_CANAL/142-230:0.65005,SEC18_YEAST/120-206:0.39411):0.18740,(O88960_RAT/32-119:0.11260,((Q9U4Y6_MANSE/98-185:0.24372,NSF_CAEEL/161-249:0.82951):0.18419,(NSF1_DROME/98-185:0.01184,NSF2_DROME/104-190:0.24247):0.26474):0.49406):0.91064):3.10778,O27676_METTH/96-191:0.00000):0.63387):0.31383,Y1156_METJA/91-168:0.39163):0.08211,((Q9Y910_AERPE/64-140:0.88267,((CDCH_HALSA/91-179:0.65466,O28182_ARCFU/94-186:0.59904):0.37345,VAT_THEAC/94-181:0.60715):0.09455):0.11588,(Q9YC86_AERPE/95-172:0.17260,SAV_SULAC/125-203:0.45619):0.28961):0.00000,(Y1297_ARCFU/96-172:0.51952,Q9V1N2_PYRAB/94-171:0.28429):0.17938);
RTP  (((Q9V2X2_PYRKO/100-199,(((SEC18_CANAL/142-230,SEC18_YEAST/120-206),(O88960_RAT/32-119,((Q9U4Y6_MANSE/98-185,NSF_CAEEL/161-249),(NSF1_DROME/98-185,NSF2_DROME/104-190)))),O27676_METTH/96-191)),Y1156_METJA/91-168),((Q9Y910_AERPE/64-140,((CDCH_HALSA/91-179,O28182_ARCFU/94-186),VAT_THEAC/94-181)),(Q9YC86_AERPE/95-172,SAV_SULAC/125-203)),(Y1297_ARCFU/96-172,Q9V1N2_PYRAB/94-171));
RTL  15.1337
LNK  CDCH_HALSA/91-179:P46464:X79560
LNK  NSF1_DROME/98-185:P46461:U09373
LNK  NSF2_DROME/104-190:P54351:U30502
LNK  NSF_CAEEL/161-249:Q94392:Z79698
LNK  O27676_METTH/96-191:O27676:AE000923
LNK  O28182_ARCFU/94-186:O28182:AE000959
LNK  O88960_RAT/32-119:O88960:AF089839
LNK  Q9U4Y6_MANSE/98-185:Q9U4Y6:AF118384
LNK  Q9V1N2_PYRAB/94-171:Q9V1N2:AJ248284
LNK  Q9V2X2_PYRKO/100-199:Q9V2X2:AB018433
LNK  Q9Y910_AERPE/64-140:Q9Y910:BA000002
LNK  Q9YC86_AERPE/95-172:Q9YC86:BA000002
LNK  SAV_SULAC/125-203:Q07590:L17042
LNK  SEC18_CANAL/142-230:P34732:X66467
LNK  SEC18_YEAST/120-206:P18759:M20662
LNK  VAT_THEAC/94-181:O05209:U78072
LNK  Y1156_METJA/91-168:Q58556:U67557
LNK  Y1297_ARCFU/96-172:O28972:AE001014
AMK  xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  Y1156_METJA/91-168
ASQ  EAKKVVLAPT.---QPIRFGPGFEDFVKRKILGQVLSKGSKV----------------------TIGVLG....TALTFVVVSTTPAGP-VRVTDFTHV-ELKEEPVSE-I
DSQ  GAAGCTAAAAAGGTTGTTTTAGCACCAACT...---------CAACCAATTAGATTCGGCCCAGGATTTGAGGACTTTGTTAAAAGGAAGATATTGGGACAAGTGTTAAGTAAAGGTTCAAAAGTT------------------------------------------------------------------ACTATTGGAGTTTTAGGA............ACTGCTTTAACATTTGTTGTTGTTAGTACAACACCAGCTGGACCT---GTTAGAGTAACTGACTTCACACACGTT---GAGTTAAAAGAAGAGCCAGTCAGTGAA---ATC
TRN  10010101110011000
NAM  SAV_SULAC/125-203
ASQ  PASKVVLAPT.---QPIRFDNSFVEYVKDTLMDKPLAKGETL----------------------PIPIYT....GTLELTVVNTQPSNY-VYVTGSTNI-EIREEPVKESS
DSQ  CCAGCAAGTAAAGTAGTGTTAGCACCTACA...---------CAACCAATTAGATTTGACAATAGTTTTGTAGAATATGTAAAAGATACACTAATGGACAAACCATTAGCTAAAGGAGAGACACTT------------------------------------------------------------------CCAATACCAATCTATACG............GGAACCTTAGAACTGACAGTTGTGAATACACAACCCTCAAATTAC---GTTTATGTTACAGGTAGTACAAATATT---GAAATAAGAGAAGAACCAGTAAAAGAGAGCTCA
TRN  10010101100011000
NAM  Q9YC86_AERPE/95-172
ASQ  PASKVVLAPT.---EPIRFGRDFVEYVKEFLLRKPISRGETI----------------------IVPVL-....EGLPLVVVSTQPAHF-VYVTEATEV-EIREKPVREEI
DSQ  CCAGCATCGAAGGTTGTTCTCGCGCCTACA...---------GAGCCTATTAGGTTTGGGAGAGACTTTGTGGAGTACGTTAAGGAGTTTCTCCTGAGGAAGCCTATTAGCAGGGGGGAGACCATA------------------------------------------------------------------ATCGTACCTGTTCTC---............GAAGGCCTTCCCCTGGTCGTCGTCTCCACCCAGCCAGCCCACTTC---GTCTATGTGACGGAGGCTACCGAGGTT---GAGATCAGGGAGAAGCCTGTTAGGGAAGAGATA
TRN  10010101100011011
NAM  Q9V1N2_PYRAB/94-171
ASQ  EAKKVTLAPT.---EPIRFGRDFVEWLHERLVGRPVVRGDYI----------------------KVGVLG....QELTFVVTATQPSGV-VQITEFTDF-NISEKPVKE-V
DSQ  GAAGCTAAGAAGGTCACGCTAGCCCCAACA...---------GAGCCCATAAGGTTCGGAAGGGACTTCGTTGAATGGCTCCACGAGAGGCTAGTTGGAAGGCCAGTAGTTAGAGGAGACTACATT------------------------------------------------------------------AAGGTCGGAGTTCTTGGG............CAAGAGCTAACCTTCGTTGTCACGGCAACCCAGCCGAGTGGTGTT---GTCCAGATAACGGAATTCACTGACTTC---AACATCAGCGAGAAGCCAGTGAAGGAA---GTA
TRN  10010101110011011
NAM  Y1297_ARCFU/96-172
ASQ  PAEKVTLAPT.---EPVRLMGG-EAYLLRLLEGRPVIKGQKI----------------------RVEVFG....HTLTFVITATRPSGV-VVVTRNTAI-ELKEKPAEE-V
DSQ  CCAGCAGAGAAAGTTACACTCGCTCCAACA...---------GAGCCGGTAAGGCTGATGGGTGGC---GAGGCGTATCTGCTGAGGCTGCTTGAAGGCAGACCGGTCATCAAAGGTCAGAAAATC------------------------------------------------------------------AGGGTTGAGGTTTTCGGT............CACACTCTGACGTTCGTAATAACCGCCACCAGGCCCTCAGGAGTC---GTCGTTGTCACGAGAAACACTGCGATC---GAGCTTAAGGAGAAGCCGGCCGAGGAG---GTA
TRN  10010101100011001
NAM  VAT_THEAC/94-181
ASQ  IAKKVTLAPIiRKDQRLKFGEGIEEYVQRALIRRPMLEQDNI----------------------SVPGLTlagqTGLLFKVVKTLPSKVPVEIGEETKI-EIREEPASEVL
DSQ  ATCGCCAAGAAGGTCACGCTTGCACCGATAataAGAAAGGATCAGAGGCTGAAATTTGGTGAAGGCATTGAAGAATATGTGCAGCGCGCACTCATCAGAAGGCCAATGCTGGAGCAGGACAACATA------------------------------------------------------------------AGTGTACCCGGCCTAACTctagccggccagACAGGTCTGCTCTTCAAGGTCGTCAAGACGCTCCCCAGCAAGGTTCCGGTTGAGATAGGCGAGGAGACAAAGATC---GAGATAAGGGAGGAACCGGCCTCTGAGGTTCTC
TRN  10010101100011011
NAM  Q9V2X2_PYRKO/100-199
ASQ  EAKKVVLAPA.---QKGVFIQIPGEIVKQNLLGRPVVKGDLVVAGGQNEAVYSPFDELLRGFFEAMPIGF....GELKFVVVNTVPKGI-VQITYNTEV-EVLPQAVEV-K
DSQ  GAGGCCAAGAAGGTCGTTCTGGCCCCTGCC...---------CAGAAGGGAGTCTTCATCCAGATTCCTGGGGAGATTGTAAAGCAGAACCTCCTCGGAAGGCCCGTCGTCAAGGGCGACCTCGTAGTGGCCGGTGGACAGAACGAGGCGGTTTACTCGCCCTTTGATGAGCTGCTCAGAGGGTTCTTCGAGGCTATGCCGATCGGCTTC............GGTGAGCTGAAGTTCGTTGTGGTAAACACAGTTCCAAAAGGCATC---GTCCAGATAACCTACAACACCGAGGTC---GAGGTGCTCCCGCAGGCCGTCGAAGTC---AAG
TRN  10010101100011011
NAM  O27676_METTH/96-191
ASQ  DAQKVVLAPV.--DQEVIIRGD----IRSAFLNRVLVKGDIIVSGIRQHISGGGLFDEFFRDFMDISPL-....GEIKLAVVSTSPAGV-VRVTPSTQV-EMQQKPVDV-S
DSQ  GACGCCCAGAAGGTCGTTCTGGCCCCAGTG...------GACCAGGAGGTCATAATAAGGGGGGAC------------ATAAGATCAGCATTCCTCAACAGGGTACTTGTTAAGGGAGACATAATAGTATCAGGTATCAGACAGCATATATCCGGCGGCGGACTCTTCGACGAGTTCTTCAGGGACTTCATGGACATATCACCCCTC---............GGAGAGATCAAACTGGCCGTCGTATCAACAAGTCCCGCAGGTGTT---GTGCGTGTAACACCCTCAACACAGGTC---GAGATGCAGCAAAAACCCGTGGACGTC---AGC
TRN  10010101100011001
NAM  Q9Y910_AERPE/64-140
ASQ  TATKVKLAPV.--SYTMTVDEGFKRYVKKKLQGVPITEGDVV----------------------VVPVIG....QAVQLQVVDARPKGA-VIVSEETIV-DVLEKPV---A
DSQ  ACGGCTACAAAGGTGAAGCTAGCCCCCGTC...------AGCTACACAATGACTGTAGACGAGGGGTTCAAGAGGTATGTGAAGAAGAAGCTCCAGGGAGTGCCTATCACCGAGGGCGACGTGGTT------------------------------------------------------------------GTTGTCCCCGTTATAGGC............CAGGCTGTCCAGCTGCAGGTGGTTGACGCTAGGCCGAAGGGTGCG---GTCATAGTTTCTGAGGAGACGATAGTT---GATGTTCTTGAGAAGCCGGTA---------GCG
TRN  10010101100011011
NAM  O28182_ARCFU/94-186
ASQ  PAKTVILAPL.KKMDLRIYGVDIGEYLKHQFLKRPVVEGDLVPLVGSPALSGFGRYNQQN----------....QAVVFVAVKTEPKGP-VVIDETTKV-VYRDRPAKG-F
DSQ  CCCGCAAAAACCGTAATCCTCGCCCCCCTC...AAGAAGATGGATTTGAGGATTTACGGAGTCGATATTGGGGAGTATCTCAAGCACCAGTTTCTGAAAAGACCGGTTGTTGAAGGAGATTTAGTCCCTCTCGTTGGCTCTCCGGCCCTTTCGGGATTTGGAAGGTACAACCAGCAGAAC------------------------------............CAAGCTGTGGTTTTCGTTGCAGTCAAGACCGAGCCCAAGGGCCCT---GTGGTCATCGACGAGACAACCAAGGTC---GTTTACAGGGACAGACCGGCAAAGGGC---TTC
TRN  10010101100011010
NAM  CDCH_HALSA/91-179
ASQ  KADTLVLAPP.-EEASVQFGSDAAGMVKRQILKRPVVARDIVPVMSSTNHP-------------FMRSPG....QAIPLIAVETEPEGV-CLVTEDTDV-ELREEPISG-F
DSQ  AAAGCGGACACGCTCGTCCTCGCACCCCCC...---GAGGAAGCGAGCGTGCAGTTCGGCAGTGACGCCGCCGGCATGGTCAAACGCCAGATCCTCAAGCGGCCGGTCGTCGCCCGCGACATCGTTCCCGTGATGTCCTCGACGAACCACCCG---------------------------------------TTCATGCGATCCCCAGGC............CAGGCGATCCCATTGATCGCCGTCGAAACGGAGCCTGAGGGCGTC---TGCCTGGTGACCGAGGACACCGACGTC---GAGCTGCGCGAGGAGCCGATCAGCGGC---TTC
TRN  11011101101011011
NAM  SEC18_YEAST/120-206
ASQ  DISFRARGKA.--VSTVFDQDELAKQFVRCYESQIFSPTQYLIMEFQGH------FFDLKI---------....RNVQAIDLGDIEPTS--AVATGIETKGILTKQTQINF
DSQ  GATATCTCATTCAGAGCTAGAGGTAAGGCG...------GTAAGCACGGTATTCGATCAAGATGAGTTAGCCAAACAATTTGTTCGTTGCTACGAATCTCAAATATTTTCTCCCACCCAGTACCTTATCATGGAGTTCCAAGGCCAT------------------TTCTTTGACTTAAAAATT---------------------------............AGAAATGTCCAAGCAATCGATTTGGGTGATATTGAACCAACCTCC------GCTGTTGCAACTGGGATAGAGACAAAGGGAATTTTGACAAAACAAACACAAATTAATTTT
TRN  10010101110011000
NAM  SEC18_CANAL/142-230
ASQ  SIDFRAKARA.--NSNPINHDELVALFLKNYENQILQPTQVIYMEYTGI------YFQIRV---------....NNVQIIDVNTKDQLPSFKDSDDINTKGILIKSTDVGF
DSQ  CTGATTGATTTTAGAGCTAAAGCTAGAGCT...------AATCTGAATCCAATTAATCATGATGAATTGGTGGCTTTATTTTTGAAAAATTATGAAAATCAAATTTTACAACCTACTCAAGTCATTTATATGGAATATACAGGGATT------------------TATTTTCAAATTAGAGTA---------------------------............AACAATGTTCAAATTATTGATGTTAATACTAAAGATCAATTACCAAGTTTCAAAGATTCCGACGATATAAATACCAAAGGGATCTTGATCAAATCTACTGATGTTGGGTTT
TRN  00000000010000000
NAM  Q9U4Y6_MANSE/98-185
ASQ  EADFMMKKTT.--SLEPYDSEQMARDFLIQFSNQVFTVGQQLAFSFQEKK-----VLSLIV---------....KNLEAVDVQALAAGV-NAVPRRVRM-GRLLPDASVQF
DSQ  GAGGCAGATTTCATGATGAAGAAAACGACA...------TCATTGGAGCCGTACGACTCCGAACAAATGGCACGCGATTTCCTCATTCAGTTTTCGAATCAGGTGTTCACCGTTGGACAGCAATTAGCCTTCTCGTTCCAAGAAAAAAAA---------------GTGTTGTCGTTGATTGTC---------------------------............AAGAATTTGGAAGCTGTGGACGTGCAAGCACTAGCAGCGGGTGTG---AACGCGGTGCCGCGTCGCGTGCGCATG---GGCCGGCTCCTACCGGACGCGTCGGTGCAGTTC
TRN  11011101111011000
NAM  NSF2_DROME/104-190
ASQ  ETDFLQKKTT.--TQEPYDSDEMAKEFLMQFAGMPLTVGQTLVFQFKDKK-----FLGLAV---------....KTLEAVDPRTVGDSL--PKTRNVRF-GRILGNTVVQF
DSQ  GAGACGGACTTCCTGCAGAAGAAGACCACC...------ACGCAGGAGCCCTACGACTCCGACGAGATGGCCAAGGAGTTCCTCATGCAGTTCGCCGGAATGCCGCTGACCGTCGGCCAAACGCTCGTCTTTCAGTTCAAAGACAAGAAA---------------TTCCTGGGCCTCGCTGTA---------------------------............AAAACGCTGGAGGCAGTGGATCCCCGAACAGTGGGCGATTCCCTA------CCGAAGACTCGGAACGTACGATTC---GGCCGCATCCTCGGTAACACGGTGGTGCAGTTC
TRN  11011101101011011
NAM  NSF1_DROME/98-185
ASQ  ETDFLQKKTV.--SQEPYDSDQMAKEFIMQFAGMALTVGQSLVFNFKDKK-----LLGLAV---------....KSLEAIDPKSLGEGK-DTAMRNVRF-GRILGNTVVQF
DSQ  GAGACGGACTTTCTGCAGAAGAAGACTGTC...------TCCCAGGAACCCTATGACTCCGATCAAATGGCCAAGGAGTTCATCATGCAATTCGCCGGAATGGCACTCACCGTTGGCCAATCACTGGTCTTCAATTTCAAGGACAAGAAA---------------CTTCTCGGCCTGGCCGTC---------------------------............AAATCCCTAGAGGCCATCGATCCCAAGAGCTTGGGCGAGGGCAAG---GACACCGCGATGCGTAATGTCCGCTTC---GGCCGCATCCTTGGCAACACCGTGGTGCAGTTC
TRN  11011101101011001
NAM  O88960_RAT/32-119
ASQ  EIDFLQKKNI.--DSNPYDTDKMAAEFIQQFNNQAFSVGQQLVFSFNDK------LFGLLV---------....KDIEAMDPSILKGEPASGKRQKIEV-GLVVGNSQVAF
DSQ  GAGATCGACTTCCTGCAGAAAAAGAACATC...------GACTCCAACCCTTACGACACCGACAAGATGGCTGCCGAGTTCATCCAGCAGTTCAACAACCAGGCCTTCTCAGTGGGACAGCAGCTTGTCTTTAGCTTCAATGATAAG------------------CTCTTTGGATTGCTGGTG---------------------------............AAGGACATCGAAGCCATGGATCCCAGCATCCTGAAGGGAGAGCCTGCGTCAGGTAAAAGGCAGAAGATTGAAGTA---GGACTGGTCGTTGGAAACAGTCAAGTTGCATTT
TRN  10010101100011001
NAM  NSF_CAEEL/161-249
ASQ  TADFNAKKNV.--TSEPLNADLMAREFSIQFGGQAFSKGMQMAFRFEDKEKNKTHTLSLVV---------....KSIEGFDIGKAAAAASGASNTDSSA------TKPKQI
DSQ  ACAGCTGATTTCAATGCCAAAAAGAATGTC...------ACATCTGAACCACTCAACGCCGATTTGATGGCCAGAGAATTCTCGATTCAGTTTGGAGGACAAGCTTTTTCAAAAGGTATGCAAATGGCTTTCCGATTTGAAGATAAAGAGAAGAACAAGACTCACACTCTATCACTTGTTGTC---------------------------............AAATCAATCGAAGGATTTGATATTGGAAAAGCTGCAGCTGCGGCAAGTGGTGCATCCAATACGGACAGTAGTGCC------------------ACCAAACCAAAGCAAATT
TRN  10010101110011001
//