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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF02487 - CLN3)
FAM  PF02487
PID  CLN3
DES  CLN3 protein
IPR  IPR003492
ANO  5
ALN  439
AID  0.42984
APH  (Q9BJW5_CAEEL/12-414:0.29324,(P91012_CAEEL/14-434:0.47020,(CLN3_CANFA/37-438:0.46861,BTN1_YEAST/8-397:0.88508):0.18724):0.24166,Q93440_CAEEL/9-420:0.22196);
ATP  (Q9BJW5_CAEEL/12-414,(P91012_CAEEL/14-434,(CLN3_CANFA/37-438,BTN1_YEAST/8-397)),Q93440_CAEEL/9-420);
ATL  2.76799
DNO  5
DLN  1317
DID  0.497402
DPH  ((Q9BJW5_CAEEL/12-414:0.26981,Q93440_CAEEL/9-420:0.23566):0.13986,P91012_CAEEL/14-434:0.35777,(BTN1_YEAST/8-397:0.58417,CLN3_CANFA/37-438:0.41291):0.17753);
DTP  ((Q9BJW5_CAEEL/12-414,Q93440_CAEEL/9-420),P91012_CAEEL/14-434,(BTN1_YEAST/8-397,CLN3_CANFA/37-438));
DTL  2.17771
RID  0.42984
RPH  (Q9BJW5_CAEEL/12-414:0.29324,(P91012_CAEEL/14-434:0.47020,(CLN3_CANFA/37-438:0.46861,BTN1_YEAST/8-397:0.88508):0.18724):0.24166,Q93440_CAEEL/9-420:0.22196);
RTP  (Q9BJW5_CAEEL/12-414,(P91012_CAEEL/14-434,(CLN3_CANFA/37-438,BTN1_YEAST/8-397)),Q93440_CAEEL/9-420);
RTL  2.76799
LNK  BTN1_YEAST/8-397:P47040:Z49334
LNK  CLN3_CANFA/37-438:Q29611:L76281
LNK  P91012_CAEEL/14-434:P91012:AF326786
LNK  Q93440_CAEEL/9-420:Q93440:AF326788
LNK  Q9BJW5_CAEEL/12-414:Q9BJW5:AF326787
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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NAM  Q93440_CAEEL/9-420
ASQ  DILAFWLLGLCNNYGYVIMLSAAEDILDDQKGT----NSSSTNSSTCETHLDSRHCQSISTGAVLLADNLPALVVQTTFPFFMHRFPFGFRAFLVFLLQASSYFVVAYSKNIAMSLAGVCMASLGQGIGEITFLAMAAHYIPETIASWSSGTGGAGLIGSFSYAFITQ---AGLSPSNTLLVQLFIPVVFAGAYFFLLTIPPTVY-SPTIHPSTWIIPKNYDKD----VFEAAEARGDV------LNTKKVPQRELGPLERIKLIGPLLY-LMVPLATVYTAEYMINQGLTELIIFNCSQG--------LSLPLSSQYRWYQVLYQLGVFISRSSVKFFEMPLWLIWCLPILQCVNMIFFFFEAVYWFTPTIIIIFVLIVFEGLLGGSAYVNTYNKIHKKVNPDVREYSLSAASMGNSLGTNIAAFLSIPLYNWVCTMK
DSQ  GATATTTTAGCATTTTGGCTACTTGGGTTATGTAACAATTATGGGTATGTCATTATGTTATCAGCTGCCGAAGATATTCTAGATGATCAAAAAGGAACA------------AATAGTTCGAGTACCAACAGTAGCACCTGTGAGACACATTTGGATAGTAGGCATTGTCAATCAATTTCAACGGGAGCTGTTCTCCTAGCTGATAACCTTCCAGCACTTGTAGTTCAAACTACGTTTCCTTTTTTTATGCATAGATTTCCCTTCGGATTTCGAGCGTTTTTGGTTTTTCTATTGCAAGCCTCTTCGTATTTTGTTGTCGCATATTCAAAAAATATTGCAATGTCATTGGCAGGAGTTTGTATGGCATCACTTGGACAAGGAATTGGAGAAATCACTTTCTTGGCAATGGCAGCACATTATATTCCAGAAACAATAGCATCGTGGTCATCTGGAACTGGAGGAGCTGGACTCATTGGCTCATTTTCTTATGCTTTTATCACTCAA---------GCTGGTCTTTCACCATCTAATACTCTACTCGTTCAACTTTTCATTCCCGTTGTGTTTGCGGGTGCCTATTTTTTCTTACTCACAATTCCACCGACAGTTTAT---TCACCGACAATTCATCCGAGTACGTGGATTATTCCGAAAAATTACGACAAGGAC------------GTATTTGAGGCTGCTGAAGCCCGGGGAGATGTT------------------CTAAATACCAAAAAAGTTCCACAACGGGAGCTTGGACCGCTCGAACGAATTAAACTAATTGGTCCACTGTTGTAT---CTGATGGTTCCACTTGCAACTGTATACACTGCTGAATATATGATTAATCAAGGATTGACTGAACTTATAATATTCAATTGTTCTCAGGGA------------------------CTATCACTTCCTCTTTCCAGTCAATATCGCTGGTATCAAGTACTTTATCAACTCGGAGTATTTATCTCAAGATCATCAGTAAAATTCTTCGAAATGCCATTGTGGTTGATTTGGTGTCTTCCAATTCTTCAATGTGTCAATATGATTTTCTTTTTCTTCGAGGCTGTTTATTGGTTCACTCCTACGATTATTATAATTTTTGTTCTCATTGTTTTCGAAGGTCTTTTGGGAGGATCTGCTTATGTGAACACTTACAATAAAATTCACAAAAAGGTCAATCCTGACGTCCGAGAGTACTCTCTGTCAGCTGCTTCCATGGGAAACTCGCTGGGAACAAATATTGCTGCATTTTTATCAATACCACTATATAATTGGGTTTGCACTATGAAA
TRN  10010101100011000
NAM  Q9BJW5_CAEEL/12-414
ASQ  IAVAFFLIGLCNNYGYVIMLSAAEDILSEQHG-----KVKSNATDLCLPAITKRECKPP-VAEVLLSDNLPSLIVKLTFPFFMDRFPFGFRVAIVCLLQATSYFVVAFSVSIPMSLAGVVFVSLGGGLGEITFLGLSAHYQRIAIAGWSSGTGMAGLLGSFSYAFLTEPHMANLTPKVALLIQLFIPVLFAFAYFILLKKPESVY-SPTLDPKSWIVPKGYDD------FIVSEHR--------------VPQRELGPSDRLKLILPMLH-LMIPLAIVYVGEYMINQGMTQQIVFDCAHG--------FNLSLHSQYRWYQVLYQFGVFVSRSSIRLVELPMWMLYLLPFLQLTNMLFFFFDALYWFVPQIAIIFALIIFEGLFGGSSYVNTFHKIHNKVEPDVREYCLSAASMGDSIGVNFAAGVSIPLHYWMCDQP
DSQ  ATAGCCGTCGCATTTTTTCTGATTGGCTTATGTAACAATTACGGGTATGTCATTATGCTCAGCGCTGCTGAAGATATTCTGAGTGAGCAACACGGT---------------AAAGTAAAGTCAAACGCAACGGATTTATGTCTGCCGGCAATAACAAAACGAGAATGCAAGCCACCA---GTGGCAGAAGTACTACTCTCGGACAATCTACCAAGTCTCATTGTCAAACTGACTTTCCCATTTTTCATGGACAGATTTCCTTTTGGGTTCCGAGTGGCAATTGTTTGCCTACTGCAGGCCACCTCATACTTCGTCGTCGCGTTTTCCGTTTCCATTCCAATGTCGTTAGCAGGCGTGGTTTTTGTTAGTTTGGGTGGAGGATTGGGAGAGATCACATTCTTGGGATTGTCTGCACATTATCAAAGAATCGCAATTGCTGGATGGTCATCTGGAACTGGAATGGCTGGACTGCTGGGATCATTCTCCTACGCATTCTTAACAGAACCACATATGGCTAACTTGACACCAAAAGTTGCACTTTTGATTCAACTTTTCATCCCGGTACTTTTCGCTTTTGCATACTTCATACTACTGAAAAAACCAGAGTCCGTGTAT---TCTCCTACTCTTGATCCAAAATCATGGATTGTTCCGAAAGGATATGATGAT------------------TTTATTGTCAGCGAACACAGA------------------------------------------GTCCCACAGAGAGAACTCGGTCCTTCGGATAGATTAAAACTAATCCTTCCTATGCTTCAT---CTAATGATTCCTCTGGCAATCGTTTACGTAGGAGAATATATGATTAATCAAGGAATGACTCAACAAATTGTTTTCGATTGTGCTCATGGT------------------------TTCAATCTATCACTTCATAGTCAATATCGATGGTATCAAGTTTTATACCAGTTCGGAGTTTTTGTATCGAGATCTTCAATTAGACTAGTTGAGCTCCCAATGTGGATGCTTTATCTGTTACCCTTTCTTCAGTTAACAAATATGTTATTCTTTTTCTTCGATGCATTATATTGGTTTGTACCTCAAATTGCCATAATCTTCGCGTTGATCATTTTCGAAGGATTGTTTGGAGGTTCTTCGTATGTCAACACATTCCATAAAATTCATAATAAGGTTGAACCCGATGTTCGAGAATACTGTCTTTCCGCTGCTTCAATGGGTGACAGTATCGGAGTAAACTTCGCAGCAGGAGTATCAATCCCACTTCATTACTGGATGTGCGATCAACCT
TRN  10010101100011000
NAM  P91012_CAEEL/14-434
ASQ  NSVAFWLLGLCNNFAYVVMLSAAKDILEKDAK---------HIEKPCREHVTTRECQMMSTGSVLLADIIPALLIKITAPMFIHRVPFGIRHSIVVLLQASSFLIVGISDSTALALFGVVLASFGSGLGEISYLALSSNYPSTVVASWSSGTGGAGLIGASAYALLTDSKLLAISPKHTMFIMLTLPALFSVSYWSILKIPHSVQRAHFLQPSTWLVTGDFIPADDMRREEVEEEEGLLGIREDRENSVDVTSRRRQTSTTLERVLPLLK-FMIPLISVYLAEYYINQGLLELLEFDCSHG--------FSMSSESQYRWFQVTYQLGVFISRSSSNYVTIPTQYLKSLAVLQIFNAGFFTITAIYSFLPHILIAFLVILFEGLLGGASYVNTFRAVHKEIPADSREFSMGVVSISDTIGIVFAGFLAMPVHNRICSMP
DSQ  AATTCGGTGGCATTTTGGCTTCTCGGATTATGCAATAACTTCGCCTACGTAGTAATGCTCAGTGCTGCCAAAGATATTCTCGAAAAAGATGCAAAA---------------------------CATATCGAAAAACCGTGTCGAGAACATGTAACAACACGAGAATGTCAAATGATGTCAACTGGATCTGTTCTTCTTGCTGACATAATTCCAGCACTTTTGATCAAAATCACAGCTCCCATGTTCATTCATCGGGTACCGTTTGGAATTCGTCACTCAATCGTCGTATTACTTCAAGCATCAAGTTTTCTGATTGTTGGAATTAGTGATTCAACAGCTTTGGCACTTTTCGGAGTTGTGCTGGCAAGTTTCGGTAGTGGTCTCGGAGAGATTTCATATCTGGCATTGAGTTCAAATTACCCATCAACTGTCGTCGCGTCGTGGTCTTCTGGAACTGGCGGAGCAGGTCTTATCGGAGCATCTGCATATGCTTTGCTCACCGATTCGAAACTTCTCGCAATTTCACCAAAACACACAATGTTCATAATGCTCACACTTCCGGCACTCTTTTCGGTTTCTTATTGGTCGATTCTCAAAATTCCACACAGTGTCCAACGAGCACACTTTCTTCAACCATCCACGTGGCTAGTCACCGGAGATTTCATTCCGGCAGATGATATGAGAAGAGAAGAAGTTGAGGAAGAAGAAGGACTTTTAGGAATACGGGAAGATCGGGAAAATAGCGTTGATGTGACTTCAAGAAGACGTCAAACTTCTACTACATTGGAACGAGTGCTCCCGTTGCTCAAA---TTTATGATTCCATTGATATCAGTTTATCTAGCAGAGTACTATATTAATCAGGGATTGTTGGAATTGCTGGAATTCGACTGTAGCCATGGT------------------------TTTTCAATGAGCTCAGAGAGCCAATATAGATGGTTTCAAGTTACCTATCAACTTGGAGTATTTATATCTAGATCTTCATCAAACTACGTCACAATTCCAACACAATATCTTAAAAGTCTAGCTGTTCTTCAGATTTTCAATGCTGGATTCTTCACTATAACTGCAATCTACTCATTTCTTCCTCATATTTTGATCGCATTTCTTGTAATTCTTTTTGAAGGATTACTTGGAGGAGCCAGTTATGTTAACACGTTCCGTGCTGTTCATAAAGAGATTCCCGCCGATTCCCGAGAATTTTCGATGGGCGTTGTCTCGATTTCAGACACGATTGGAATCGTTTTTGCTGGTTTTCTTGCCATGCCGGTTCATAATCGTATTTGTTCAATGCCA
TRN  10010101100011000
NAM  CLN3_CANFA/37-438
ASQ  NVMGFWLLGLCNNFSYVVMLSAAHDILSHQRASGNQSHVDPDPPPTAHNSSSRFDCNSVSTAAVLLADILPTLIIKLLAPLGLHLLPYSPRVLVSGICAAGSFILVAFSHSVGTSLCGVVLASISSGVGEVTFLSLTAFYPRAVISWWSSGTGGAGLMGALSYLGLTQ---AGLSPQHTLLSMLGIPALMLASYFFLLTSPEPQDPGGEEEAETSARQPLIDS-------ETPESKPD-------------SSSNLSLQERWTVFKGLLW-YIVPLVLVYFAEYFINQGLFELLFFRNT-----------SLNHAQQYRWYQMLYQAGVFVSRSSLHCCRIR--FTWVLALLQCLNLAFLLVDVWFSFLPSIYLVFLIILYEGLLGGAAYVNTFHNIALETSDQHREFAMAAACISDTLGISLSGLLALPLHDFLCHLS
DSQ  AACGTGATGGGTTTCTGGCTCCTGGGCCTTTGCAACAACTTCTCTTATGTGGTGATGCTCAGCGCTGCCCATGACATCCTTAGCCACCAGAGGGCATCTGGGAACCAGAGCCATGTGGACCCAGACCCTCCGCCTACTGCCCACAATAGCTCATCTCGATTTGACTGCAACTCTGTCTCCACGGCTGCAGTGCTCCTGGCAGACATCCTCCCCACCCTCATCATCAAACTGCTAGCTCCCCTTGGTCTGCATCTGCTGCCCTACAGCCCCCGAGTTCTTGTCAGTGGGATTTGTGCCGCTGGAAGCTTCATCCTGGTTGCCTTTTCTCATTCAGTGGGGACCAGCCTGTGTGGTGTGGTCTTGGCTAGCATCTCGTCAGGTGTGGGAGAGGTCACCTTCCTCTCACTCACTGCCTTCTACCCCAGGGCTGTGATCTCCTGGTGGTCCTCAGGAACTGGGGGAGCAGGACTGATGGGAGCATTGTCCTATCTGGGCCTCACCCAG---------GCTGGCCTCTCCCCTCAGCACACCCTACTGTCCATGCTGGGTATCCCCGCCCTGATGCTGGCCAGCTATTTCTTTTTGCTCACATCTCCTGAGCCCCAGGACCCCGGAGGGGAAGAAGAGGCAGAGACATCAGCGCGGCAGCCCCTGATAGACAGT---------------------GAAACCCCAGAGTCGAAGCCAGAC---------------------------------------TCCAGCTCAAACCTCTCCCTTCAGGAAAGGTGGACTGTGTTCAAGGGCTTGCTATGG---TACATTGTCCCCTTGGTCCTAGTTTACTTTGCGGAGTATTTCATCAATCAGGGGCTGTTCGAGCTCCTGTTCTTCCGGAACACA---------------------------------TCCCTGAATCATGCTCAGCAGTATCGCTGGTACCAGATGCTCTACCAGGCTGGCGTCTTTGTTTCCCGTTCTTCTCTCCATTGCTGTCGCATCCGT------TTCACATGGGTCCTGGCCCTGCTGCAGTGCCTCAACCTGGCCTTCCTGCTGGTGGACGTGTGGTTCAGCTTCCTGCCCAGCATCTACCTCGTCTTCCTGATCATTCTGTATGAGGGGCTCCTCGGAGGTGCTGCCTATGTGAACACCTTCCACAACATTGCCCTGGAGACAAGTGACCAGCACCGGGAATTTGCCATGGCAGCTGCCTGTATCTCCGACACTTTGGGAATCTCCCTGTCAGGGCTCCTGGCCCTGCCTCTGCACGACTTCCTTTGTCACCTGTCT
TRN  10010101100011001
NAM  BTN1_YEAST/8-397
ASQ  IYCYFWLFGLINNVLYVVILSAAVDIVG---------------P--TLP-------KSL----VLLADIFPSLAIKLCSPFFIDRIKYSYRIWSLITMSCLGMFLVSF-KNLFVCLLGISFASISSGFGEVTFLQLTHYYKQISLNGWSSGTGGAGIIGGASYMFLTS--IFKVPVKLTLLVFSLLP--FAFLFYFKLESNDTNLTYQSLQQIDEAEDDQLVP------FPVAFTHTN--------ASQSLYSTRQHILQTVKRLRRLVFPYMVPLTTVYLFEYLINQAVAPTLLFPINGDERSKSMPFFFHKYRDIYVTYGTLYQLGVFISRSFGHLMRMR--SLYILAFLQGVNLCITVLQSWFYVTHSPWAVMILIFYEGFLGGASYVNTFLNILEQEDPDETEFAMGAVSIADSFGVFLAALLGLGLEPKLCRHQ
DSQ  ATATATTGCTACTTTTGGCTCTTTGGTTTGATCAATAATGTACTTTATGTGGTAATACTTTCAGCAGCTGTTGATATCGTGGGT---------------------------------------------CCT------ACCTTGCCT---------------------AAATCTCTA------------GTATTGCTAGCAGATATATTCCCATCACTCGCCATTAAATTGTGTTCCCCATTCTTTATTGATAGAATCAAGTACAGCTATAGAATATGGTCTTTGATCACGATGAGTTGCTTAGGAATGTTCTTAGTTTCTTTT---AAAAACTTGTTTGTTTGTCTTTTAGGAATATCTTTCGCATCTATATCTTCCGGATTTGGAGAAGTGACATTCCTACAGCTAACACACTATTACAAACAAATTTCTTTGAATGGATGGTCGTCAGGTACTGGTGGTGCAGGAATCATTGGCGGAGCATCTTATATGTTCTTAACTTCA------ATCTTTAAAGTTCCAGTGAAGCTAACTTTACTAGTATTTAGTCTCCTTCCA------TTTGCATTTTTGTTTTATTTTAAATTAGAATCCAATGATACCAACCTGACTTACCAAAGTCTTCAACAAATTGACGAAGCAGAGGATGACCAGTTGGTGCCC------------------TTTCCTGTCGCCTTTACACATACCAAC------------------------GCTTCGCAATCCCTGTATTCTACAAGACAGCACATTTTGCAAACGGTCAAGAGACTTCGAAGATTGGTTTTTCCATACATGGTTCCATTGACCACCGTCTACTTATTCGAATATTTAATAAACCAAGCGGTAGCTCCGACCCTATTATTTCCGATTAATGGTGATGAAAGAAGTAAATCGATGCCATTTTTCTTCCATAAATACAGAGATATATACGTAACCTATGGAACGCTCTACCAATTAGGTGTCTTTATATCAAGATCCTTTGGACATCTTATGAGAATGAGG------AGTTTATACATCTTAGCGTTTTTACAAGGTGTGAATTTGTGCATAACGGTACTGCAATCATGGTTTTATGTCACACATTCGCCCTGGGCGGTGATGATATTAATATTCTATGAGGGTTTTCTTGGTGGTGCGTCATATGTTAACACATTCTTAAATATTCTCGAACAAGAGGATCCTGATGAAACAGAGTTCGCCATGGGTGCTGTGTCCATCGCTGATTCCTTTGGCGTTTTTTTGGCTGCGTTACTTGGTTTGGGGCTAGAACCCAAACTTTGTAGGCATCAA
TRN  10010101100011000
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