pan•dit

PANDIT Protein and Associated NucleotideDomains with Inferred Trees

FAM  PF02178
PID  AT_hook
DES  AT hook motif
IPR  IPR000637
ANO  43
ALN  13
AID  0.465752
APH  (((O82964_RALSO/27-39:0.29987,((PRH_PETCR/263-275:0.35378,(CPD1_DROME/121-133:0.24245,Q40725_ORYSA/332-344:0.35084):0.42359):0.00000,ZBT24_HUMAN/159-171:0.21887):0.25060):0.00000,(O15026_HUMAN/2759-2771:0.00000,(((P91155_CAEEL/110-122:0.27771,Q43877_PEA/110-122:0.44258):0.21561,(Q38778_AVESA/111-123:0.00000,((O65795_WHEAT/227-239:0.14664,Q43877_PEA/133-145:0.40538):0.00000,CPD1_DROME/49-61:0.73218):0.45458):0.54450):0.09205,(AAC2_DICDI/182-194:0.41964,(((HMGI_HUMAN/54-66:0.42307,(O23142_ARATH/137-149:0.21629,(O82596_ARATH/469-479:0.00000,BAZ2A_HUMAN/1377-1389:1.26608):0.11873):0.00000):0.81472,YFFO_ECOLI/20-32:0.31073):0.02475,(Q50887_MYXXA/233-245:0.14359,(CPD1_DROME/261-273:0.44940,(CPD1_DROME/6-18:0.10826,O45912_CAEEL/267-279:1.98645):0.25824):0.23642):0.04570):0.00000):0.59068):0.22612):0.36012):0.50761,((O88791_RAT/74-86:0.57943,Q22173_CAEEL/559-571:0.04360):0.36170,(((CPD1_DROME/93-105:0.00000,O49694_ARATH/196-208:0.86671):0.80971,O45912_CAEEL/165-177:0.19987):0.00000,((Q01086_9SACH/264-276:0.42904,(Q40725_ORYSA/253-265:0.11896,(ORC1_SCHPO/225-237:0.48573,O59212_PYRHO/84-96:0.43972):0.25494):0.02500):0.00000,(Q43386_ARATH/97-109:0.25416,(Q40725_ORYSA/96-108:0.15736,CPD1_DROME/173-185:0.72834):0.23801):0.24430):0.24341):0.14352):0.14150,(YN06_CAEEL/158-170:0.31132,(O49694_ARATH/131-143:0.28671,(Q22381_CAEEL/138-150:0.16783,(Q06339_YEAST/6-18:0.30667,((CPD1_DROME/33-45:0.29562,CPD1_DROME/280-292:0.49142):0.40584,(BAZ2A_HUMAN/1159-1171:0.70951,(O43095_TORDE/221-233:0.00000,BAZ2A_HUMAN/622-634:0.67511):0.00000):0.00000):0.34406):0.21109):0.16919):0.00000):0.00000);
ATP  (((O82964_RALSO/27-39,((PRH_PETCR/263-275,(CPD1_DROME/121-133,Q40725_ORYSA/332-344)),ZBT24_HUMAN/159-171)),(O15026_HUMAN/2759-2771,(((P91155_CAEEL/110-122,Q43877_PEA/110-122),(Q38778_AVESA/111-123,((O65795_WHEAT/227-239,Q43877_PEA/133-145),CPD1_DROME/49-61))),(AAC2_DICDI/182-194,(((HMGI_HUMAN/54-66,(O23142_ARATH/137-149,(O82596_ARATH/469-479,BAZ2A_HUMAN/1377-1389))),YFFO_ECOLI/20-32),(Q50887_MYXXA/233-245,(CPD1_DROME/261-273,(CPD1_DROME/6-18,O45912_CAEEL/267-279)))))))),((O88791_RAT/74-86,Q22173_CAEEL/559-571),(((CPD1_DROME/93-105,O49694_ARATH/196-208),O45912_CAEEL/165-177),((Q01086_9SACH/264-276,(Q40725_ORYSA/253-265,(ORC1_SCHPO/225-237,O59212_PYRHO/84-96))),(Q43386_ARATH/97-109,(Q40725_ORYSA/96-108,CPD1_DROME/173-185))))),(YN06_CAEEL/158-170,(O49694_ARATH/131-143,(Q22381_CAEEL/138-150,(Q06339_YEAST/6-18,((CPD1_DROME/33-45,CPD1_DROME/280-292),(BAZ2A_HUMAN/1159-1171,(O43095_TORDE/221-233,BAZ2A_HUMAN/622-634))))))));
ATL  25.0972
DNO  41
DLN  39
DID  0.444332
DPH  ((((((((((((O45912_CAEEL/165-177:0.04288,((((CPD1_DROME/33-45:0.16083,((O65795_WHEAT/227-239:0.28616,Q38778_AVESA/111-123:0.31738):0.13854,((Q50887_MYXXA/233-245:0.14172,CPD1_DROME/261-273:0.51921):0.07244,CPD1_DROME/6-18:0.36872):0.07689):0.12539):0.15184,(CPD1_DROME/49-61:0.48862,O45912_CAEEL/267-279:0.31290):0.23311):0.17851,YFFO_ECOLI/20-32:0.22195):0.21606,CPD1_DROME/280-292:0.17162):0.34189):0.13329,(((Q43386_ARATH/97-109:0.17496,O82964_RALSO/27-39:0.35258):0.17358,(Q40725_ORYSA/253-265:0.00000,Q40725_ORYSA/332-344:0.62317):0.23600):0.13814,(Q40725_ORYSA/96-108:0.00000,CPD1_DROME/173-185:0.68545):0.42459):0.05914):0.04725,(Q43877_PEA/110-122:0.15157,Q43877_PEA/133-145:0.40708):0.22375):0.19030,(Q22381_CAEEL/138-150:0.15271,(((O15026_HUMAN/2759-2771:0.25232,PRH_PETCR/263-275:0.24575):0.17336,(Q22173_CAEEL/559-571:0.22519,ORC1_SCHPO/225-237:0.30307):0.06943):0.15598,YN06_CAEEL/158-170:0.03781):0.23337):0.01200):0.09518,(O43095_TORDE/221-233:0.40659,BAZ2A_HUMAN/622-634:0.23729):0.14577):0.07361,(((HMGI_HUMAN/54-66:0.54035,ZBT24_HUMAN/159-171:0.17612):0.24355,Q01086_9SACH/264-276:0.29245):0.09941,AAC2_DICDI/182-194:0.21061):0.12421):0.17704,O49694_ARATH/131-143:0.00000):0.14739,(O59212_PYRHO/84-96:0.46486,(O88791_RAT/74-86:0.28126,CPD1_DROME/121-133:0.71714):0.29952):0.03151):0.15214,(CPD1_DROME/93-105:0.62760,Q06339_YEAST/6-18:0.17460):0.05678):0.23395,O82596_ARATH/469-479:0.08997):0.11642,O49694_ARATH/196-208:0.46130):0.06825,BAZ2A_HUMAN/1377-1389:0.56037,O23142_ARATH/137-149:0.03964);
DTP  ((((((((((((O45912_CAEEL/165-177,((((CPD1_DROME/33-45,((O65795_WHEAT/227-239,Q38778_AVESA/111-123),((Q50887_MYXXA/233-245,CPD1_DROME/261-273),CPD1_DROME/6-18))),(CPD1_DROME/49-61,O45912_CAEEL/267-279)),YFFO_ECOLI/20-32),CPD1_DROME/280-292)),(((Q43386_ARATH/97-109,O82964_RALSO/27-39),(Q40725_ORYSA/253-265,Q40725_ORYSA/332-344)),(Q40725_ORYSA/96-108,CPD1_DROME/173-185))),(Q43877_PEA/110-122,Q43877_PEA/133-145)),(Q22381_CAEEL/138-150,(((O15026_HUMAN/2759-2771,PRH_PETCR/263-275),(Q22173_CAEEL/559-571,ORC1_SCHPO/225-237)),YN06_CAEEL/158-170))),(O43095_TORDE/221-233,BAZ2A_HUMAN/622-634)),(((HMGI_HUMAN/54-66,ZBT24_HUMAN/159-171),Q01086_9SACH/264-276),AAC2_DICDI/182-194)),O49694_ARATH/131-143),(O59212_PYRHO/84-96,(O88791_RAT/74-86,CPD1_DROME/121-133))),(CPD1_DROME/93-105,Q06339_YEAST/6-18)),O82596_ARATH/469-479),O49694_ARATH/196-208),BAZ2A_HUMAN/1377-1389,O23142_ARATH/137-149);
DTL  29.3812
RID  0.464188
RPH  (((((((((Q40725_ORYSA/96-108:0.00000,((Q43877_PEA/133-145:0.37639,((O65795_WHEAT/227-239:0.16394,Q38778_AVESA/111-123:0.44044):0.02434,CPD1_DROME/49-61:0.70148):0.00000):0.77204,CPD1_DROME/173-185:0.89494):0.00000):0.57127,Q43877_PEA/110-122:0.63151):0.09402,O45912_CAEEL/165-177:0.07191):0.16265,((((BAZ2A_HUMAN/622-634:0.31972,(O43095_TORDE/221-233:0.18593,Q06339_YEAST/6-18:0.41085):0.11286):0.13799,(O49694_ARATH/131-143:0.31486,((O82596_ARATH/469-479:0.42806,(O23142_ARATH/137-149:0.58692,((Q50887_MYXXA/233-245:0.18786,((CPD1_DROME/6-18:0.35276,((CPD1_DROME/280-292:0.61991,CPD1_DROME/33-45:0.36953):0.22735,O45912_CAEEL/267-279:1.16599):0.16082):0.18903,YFFO_ECOLI/20-32:0.28190):0.11285):0.00000,(CPD1_DROME/261-273:0.72173,BAZ2A_HUMAN/1377-1389:1.12244):0.00000):0.12504):0.00000):0.22841,AAC2_DICDI/182-194:0.13207):0.45044):0.16637):0.00000,Q22381_CAEEL/138-150:0.21340):0.19835,YN06_CAEEL/158-170:0.17951):0.39382):0.19684,((O88791_RAT/74-86:0.34243,ORC1_SCHPO/225-237:0.43363):0.00000,O59212_PYRHO/84-96:0.52945):0.10257):0.08088,Q22173_CAEEL/559-571:0.44035):0.00000,(Q43386_ARATH/97-109:0.21145,((((CPD1_DROME/93-105:0.47657,O49694_ARATH/196-208:0.34833):0.49726,HMGI_HUMAN/54-66:0.23236):0.42364,Q01086_9SACH/264-276:0.30937):0.00000,(((PRH_PETCR/263-275:0.48523,ZBT24_HUMAN/159-171:0.13839):0.18538,O15026_HUMAN/2759-2771:0.41541):0.22024,O82964_RALSO/27-39:0.18859):0.27166):0.10411):0.00000):0.12553,Q40725_ORYSA/253-265:0.23913):0.31755,CPD1_DROME/121-133:0.53681,Q40725_ORYSA/332-344:0.17896);
RTP  (((((((((Q40725_ORYSA/96-108,((Q43877_PEA/133-145,((O65795_WHEAT/227-239,Q38778_AVESA/111-123),CPD1_DROME/49-61)),CPD1_DROME/173-185)),Q43877_PEA/110-122),O45912_CAEEL/165-177),((((BAZ2A_HUMAN/622-634,(O43095_TORDE/221-233,Q06339_YEAST/6-18)),(O49694_ARATH/131-143,((O82596_ARATH/469-479,(O23142_ARATH/137-149,((Q50887_MYXXA/233-245,((CPD1_DROME/6-18,((CPD1_DROME/280-292,CPD1_DROME/33-45),O45912_CAEEL/267-279)),YFFO_ECOLI/20-32)),(CPD1_DROME/261-273,BAZ2A_HUMAN/1377-1389)))),AAC2_DICDI/182-194))),Q22381_CAEEL/138-150),YN06_CAEEL/158-170)),((O88791_RAT/74-86,ORC1_SCHPO/225-237),O59212_PYRHO/84-96)),Q22173_CAEEL/559-571),(Q43386_ARATH/97-109,((((CPD1_DROME/93-105,O49694_ARATH/196-208),HMGI_HUMAN/54-66),Q01086_9SACH/264-276),(((PRH_PETCR/263-275,ZBT24_HUMAN/159-171),O15026_HUMAN/2759-2771),O82964_RALSO/27-39)))),Q40725_ORYSA/253-265),CPD1_DROME/121-133,Q40725_ORYSA/332-344);
RTL  24.4251
LNK  AAC2_DICDI/182-194:P14196:X16522
LNK  BAZ2A_HUMAN/1159-1171:Q9UIF9:
LNK  BAZ2A_HUMAN/1377-1389:Q9UIF9:AB032254
LNK  BAZ2A_HUMAN/622-634:Q9UIF9:AB032254
LNK  CPD1_DROME/121-133:P22058:J04725
LNK  CPD1_DROME/173-185:P22058:J04725
LNK  CPD1_DROME/261-273:P22058:J04725
LNK  CPD1_DROME/280-292:P22058:J04725
LNK  CPD1_DROME/33-45:P22058:J04725
LNK  CPD1_DROME/49-61:P22058:J04725
LNK  CPD1_DROME/6-18:P22058:J04725
LNK  CPD1_DROME/93-105:P22058:J04725
LNK  HMGI_HUMAN/54-66:P17096:X14957
LNK  O15026_HUMAN/2759-2771:O15026:AB002307
LNK  O23142_ARATH/137-149:O23142:AJ222585
LNK  O43095_TORDE/221-233:O43095:Y11042
LNK  O45912_CAEEL/165-177:O45912:AF056579
LNK  O45912_CAEEL/267-279:O45912:AF056579
LNK  O49694_ARATH/131-143:O49694:AL021889
LNK  O49694_ARATH/196-208:O49694:AL021889
LNK  O59212_PYRHO/84-96:O59212:BA000001
LNK  O65795_WHEAT/227-239:O65795:D87065
LNK  O82596_ARATH/469-479:O82596:AF096370
LNK  O82964_RALSO/27-39:O82964:AB015669
LNK  O88791_RAT/74-86:O88791:U89695
LNK  ORC1_SCHPO/225-237:P54789:U40378
LNK  P91155_CAEEL/110-122:P91155:
LNK  PRH_PETCR/263-275:P48786:L21975
LNK  Q01086_9SACH/264-276:Q01086:X56553
LNK  Q06339_YEAST/6-18:Q06339:U28372
LNK  Q22173_CAEEL/559-571:Q22173:U41274
LNK  Q22381_CAEEL/138-150:Q22381:Z72515
LNK  Q38778_AVESA/111-123:Q38778:L24391
LNK  Q40725_ORYSA/253-265:Q40725:X88798
LNK  Q40725_ORYSA/332-344:Q40725:X88798
LNK  Q40725_ORYSA/96-108:Q40725:X88798
LNK  Q43386_ARATH/97-109:Q43386:X99116
LNK  Q43877_PEA/110-122:Q43877:X89568
LNK  Q43877_PEA/133-145:Q43877:X89568
LNK  Q50887_MYXXA/233-245:Q50887:Z56280
LNK  YFFO_ECOLI/20-32:P76546:U00096
LNK  YN06_CAEEL/158-170:Q03615:Z19158
LNK  ZBT24_HUMAN/159-171:O43167:AB007901
AMK  xxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  O45912_CAEEL/267-279
ASQ  VLKRGRSVKQPKD
DSQ  GTCCTGAAGCGAGGACGTTCAGTGAAGCAGCCCAAAGAC
TRN  11011101101011001
NAM  CPD1_DROME/173-185
ASQ  GRGLGRPKKRAVE
DSQ  GGACGCGGCCTGGGAAGACCCAAGAAGCGGGCTGTCGAG
TRN  10010101100011011
NAM  Q40725_ORYSA/96-108
ASQ  GRGRGRPPKKASS
DSQ  GGACGGGGACGAGGACGACCGCCCAAGAAAGCTTCCTCC
TRN  11111101111011011
NAM  CPD1_DROME/49-61
ASQ  GGQRGRPPKASKI
DSQ  GGTGGACAGCGGGGTCGCCCACCGAAGGCGTCAAAAATC
TRN  11111101111011001
NAM  Q43877_PEA/133-145
ASQ  GRPRGRPKKIART
DSQ  GGTAGGCCAAGGGGTAGGCCGAAGAAGATTGCTAGGACT
TRN  10110101110011011
NAM  Q38778_AVESA/111-123
ASQ  GRPRGRPAKAKDP
DSQ  GGGCGCCCCCGCGGACGCCCGGCCAAGGCCAAGGACCCC
TRN  11111111111111111
NAM  O65795_WHEAT/227-239
ASQ  AKPRGRPAKAAKT
DSQ  GCCAAGCCGAGGGGCCGCCCCGCCAAGGCCGCCAAGACC
TRN  10110101110011011
NAM  Q40725_ORYSA/332-344
ASQ  KRGAGRPRKKRPL
DSQ  AAGAGAGGCGCTGGGAGGCCAAGAAAGAAGAGGCCACTG
TRN  10010101100011011
NAM  CPD1_DROME/121-133
ASQ  KRKAGRPKKHQPS
DSQ  AAGCGCAAGGCCGGCAGGCCCAAGAAGCACCAGCCCAGC
TRN  10110101110011011
NAM  Q40725_ORYSA/253-265
ASQ  KRGVGRPRKNATP
DSQ  AAGCGGGGTGTTGGACGCCCAAGGAAGAACGCCACTCCT
TRN  10110101110011011
NAM  ORC1_SCHPO/225-237
ASQ  SRGRGRPRKYPLP
DSQ  TCTAGAGGTCGTGGTCGCCCTCGTAAATATCCTTTACCA
TRN  10110101110011010
NAM  Q01086_9SACH/264-276
ASQ  KRGRGRPRRSVTD
DSQ  AAAAGAGGCCGAGGGAGACCAAGAAGAAGTGTTACAGAC
TRN  10110101110011011
NAM  Q43877_PEA/110-122
ASQ  PRPRGRPPKDPNA
DSQ  CCGAGGCCAAGGGGTCGTCCGCCTAAGGATCCTAATGCA
TRN  10110101110011011
NAM  Q22173_CAEEL/559-571
ASQ  KKTRGRPRKDRSQ
DSQ  AAAAAAACTCGAGGACGGCCTCGCAAAGATCGATCACAA
TRN  11111101111011001
NAM  YN06_CAEEL/158-170
ASQ  KRRRGRPRKDEEA
DSQ  AAAAGACGACGAGGTCGTCCACGTAAAGATGAAGAAGCA
TRN  10110101110011011
NAM  O88791_RAT/74-86
ASQ  KRPRGRPRKWPQQ
DSQ  AAACGGCCAAGAGGCAGACCCAGGAAATGGCCACAACAA
TRN  10110101110011011
NAM  P91155_CAEEL/110-122
ASQ  PRARGRPRKATNL
NAM  O82964_RALSO/27-39
ASQ  KRGRGRPRKAHAM
DSQ  AAGCGCGGCCGTGGTCGTCCACGCAAGGCGCACGCCATG
TRN  11111111111111111
NAM  PRH_PETCR/263-275
ASQ  KRSRGRPRKVQNS
DSQ  AAAAGATCTCGTGGTCGGCCCAGAAAAGTACAAAATTCT
TRN  10110101110011011
NAM  Q43386_ARATH/97-109
ASQ  KRGRGRPPKQKTQ
DSQ  AAGCGTGGTCGTGGCCGTCCTCCGAAGCAGAAGACTCAG
TRN  11111111111111111
NAM  AAC2_DICDI/182-194
ASQ  KRKRGRPPKMDEE
DSQ  AAGAGAAAGAGAGGTAGACCACCAAAGATGGATGAAGAA
TRN  10110101110011011
NAM  ZBT24_HUMAN/159-171
ASQ  KRKRGRPKKVNTL
DSQ  AAGCGGAAACGGGGAAGACCAAAAAAAGTCAATACATTG
TRN  10110101110011011
NAM  O15026_HUMAN/2759-2771
ASQ  KRRRGRPPKARDL
DSQ  AAAAGAAGGCGAGGACGACCCCCTAAAGCACGAGATTTG
TRN  10110101110011011
NAM  BAZ2A_HUMAN/622-634
ASQ  TGKRGRPRNTEKA
DSQ  ACTGGCAAACGGGGTCGACCTCGAAACACTGAGAAGGCT
TRN  11111101111011011
NAM  BAZ2A_HUMAN/1159-1171
ASQ  ARARGRPRKTKPG
NAM  Q22381_CAEEL/138-150
ASQ  QKRRGRPRKTDAA
DSQ  CAGAAACGGAGAGGTCGTCCTCGAAAAACTGATGCTGCT
TRN  10110101110011011
NAM  O43095_TORDE/221-233
ASQ  TRKRGRPRKTIAS
DSQ  ACTCGAAAGAGAGGTCGGCCTAGGAAGACTATCGCCTCG
TRN  10110101110011011
NAM  O49694_ARATH/196-208
ASQ  KRNRGRPPGSGGT
DSQ  AAACGGAACAGAGGACGTCCTCCTGGCTCCGGAGGAACA
TRN  10110101110011011
NAM  HMGI_HUMAN/54-66
ASQ  KRPRGRPKGSKNK
DSQ  AAGAGACCTCGGGGCCGACCAAAGGGAAGCAAAAACAAG
TRN  10110101110011011
NAM  BAZ2A_HUMAN/1377-1389
ASQ  PKRRGRPPSKFFK
DSQ  CCCAAACGGAGAGGGAGACCTCCCAGTAAGTTCTTCAAA
TRN  10110101110011011
NAM  CPD1_DROME/261-273
ASQ  PKKRGRPSLAAGK
DSQ  CCGAAGAAACGTGGACGTCCCTCTCTTGCCGCTGGCAAG
TRN  11011101111011011
NAM  O23142_ARATH/137-149
ASQ  EKKRGRPPGSSSK
DSQ  GAGAAGAAGAGAGGAAGACCTCCTGGTTCTTCTAGCAAA
TRN  10110101110011011
NAM  O82596_ARATH/469-479
ASQ  KKKRGRPP--INK
DSQ  AAAAAGAAAAGAGGAAGACCCCCA------ATTAACAAA
TRN  10110101110011011
NAM  CPD1_DROME/6-18
ASQ  VKKRGRPSKASVG
DSQ  GTAAAGAAGCGCGGCCGACCGTCAAAGGCATCCGTCGGT
TRN  11111111111111101
NAM  Q06339_YEAST/6-18
ASQ  AKKRGRPRKSVVA
DSQ  GCAAAGAAAAGAGGAAGACCTAGAAAATCTGTGGTAGCA
TRN  10110101110011011
NAM  CPD1_DROME/33-45
ASQ  IKKRGRPAKNKGS
DSQ  ATCAAAAAGCGCGGTCGTCCCGCCAAGAACAAGGGCTCC
TRN  11111101111011011
NAM  Q50887_MYXXA/233-245
ASQ  PKKRGRPPKAKTE
DSQ  CCCAAGAAGCGCGGCCGTCCGCCCAAGGCCAAGACGGAG
TRN  11111111111111111
NAM  YFFO_ECOLI/20-32
ASQ  PKKRGRPAKYNEK
DSQ  CCGAAAAAGCGCGGTCGGCCAGCTAAATATAATGAAAAA
TRN  11111101111011011
NAM  O49694_ARATH/131-143
ASQ  KKKRGRPRKYAAD
DSQ  AAGAAGAAACGAGGTAGACCTAGGAAGTATGCTGCTGAT
TRN  10110101110011011
NAM  CPD1_DROME/93-105
ASQ  TKGRGRPKSSGGA
DSQ  ACGAAGGGCAGGGGACGACCCAAGAGCAGTGGTGGCGCC
TRN  10110101110011011
NAM  O59212_PYRHO/84-96
ASQ  EKGRGRPKKYSTR
DSQ  GAAAAAGGTAGGGGTAGGCCCAAAAAGTATTCTACCAGA
TRN  10110101110011011
NAM  O45912_CAEEL/165-177
ASQ  KKGRGRPAKNPSA
DSQ  AAGAAGGGACGTGGTCGCCCAGCAAAGAATCCTTCAGCT
TRN  11111111111111101
NAM  CPD1_DROME/280-292
ASQ  TKPRSRPAKNIDD
DSQ  ACAAAGCCCCGTAGTCGCCCAGCGAAAAATATTGATGAC
TRN  11111101111011011
//