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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF02177 - A4_EXTRA)
FAM  PF02177
PID  A4_EXTRA
DES  Amyloid A4 extracellular domain
IPR  IPR008154
ANO  5
ALN  182
AID  0.448278
APH  (APLP2_RAT/42-204:0.21521,A4_HUMAN/24-188:0.18685,((A4_DROME/26-198:0.42893,A4_CAEEL/28-196:0.56163):0.49243,APLP1_HUMAN/46-211:0.48682):0.13656);
ATP  (APLP2_RAT/42-204,A4_HUMAN/24-188,((A4_DROME/26-198,A4_CAEEL/28-196),APLP1_HUMAN/46-211));
ATL  2.50843
DNO  5
DLN  546
DID  0.525079
DPH  ((APLP1_HUMAN/46-211:0.39931,(A4_CAEEL/28-196:0.39005,A4_DROME/26-198:0.34184):0.30464):0.07600,A4_HUMAN/24-188:0.20625,APLP2_RAT/42-204:0.18673);
DTP  ((APLP1_HUMAN/46-211,(A4_CAEEL/28-196,A4_DROME/26-198)),A4_HUMAN/24-188,APLP2_RAT/42-204);
DTL  1.90482
RID  0.448278
RPH  (APLP2_RAT/42-204:0.21521,A4_HUMAN/24-188:0.18685,((A4_DROME/26-198:0.42893,A4_CAEEL/28-196:0.56163):0.49243,APLP1_HUMAN/46-211:0.48682):0.13656);
RTP  (APLP2_RAT/42-204,A4_HUMAN/24-188,((A4_DROME/26-198,A4_CAEEL/28-196),APLP1_HUMAN/46-211));
RTL  2.50843
LNK  A4_CAEEL/28-196:Q10651:U56966
LNK  A4_DROME/26-198:P14599:AE003418
LNK  A4_HUMAN/24-188:P05067:Y00264
LNK  APLP1_HUMAN/46-211:P51693:AD000864
LNK  APLP2_RAT/42-204:P15943:X77934
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  APLP2_RAT/42-204
ASQ  GTGFAVAEPQIAMFCG----KLNMHVNIQTGKWEPDPTGTK---SCLGTKEEVLQYCQEIYPELQITNVMEANQPVNIDSWCRRD---KKQCRSH---IVIPFKCLVGEFVSDVLLVPENCQFFHQERMEVCEKHQRWHTVVKEACLTE------GMTLYSYGMLLPCGVDQFHGTEYVCCP
DSQ  GGAACAGGCTTTGCGGTTGCTGAACCTCAGATTGCGATGTTCTGTGGG------------AAGCTGAACATGCATGTGAACATTCAGACTGGGAAGTGGGAGCCTGACCCAACCGGCACCAAG---------AGCTGCCTGGGAACAAAGGAGGAAGTTCTTCAGTACTGCCAGGAGATATATCCAGAGCTGCAGATCACAAATGTGATGGAAGCAAACCAGCCAGTCAATATTGATAGTTGGTGCCGAAGGGAC---------AAAAAACAGTGCAGGAGTCAC---------ATTGTTATACCATTCAAGTGTCTTGTGGGTGAATTTGTAAGTGATGTTCTGCTAGTTCCAGAAAACTGCCAGTTTTTCCACCAAGAGCGGATGGAGGTGTGTGAGAAGCATCAGCGGTGGCACACAGTCGTCAAGGAGGCATGTCTGACTGAG------------------GGGATGACCTTATATAGCTATGGCATGCTGCTGCCCTGTGGGGTAGACCAGTTCCATGGCACTGAGTATGTGTGCTGCCCT
TRN  10010101100011010
NAM  A4_HUMAN/24-188
ASQ  GNAGLLAEPQIAMFCG----RLNMHMNVQNGKWDSDPSGTK---TCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRG---RKQCKTHP-HFVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEK------STNLHDYGMLLPCGIDKFRGVEFVCCP
DSQ  GGTAATGCTGGCCTGCTGGCTGAACCCCAGATTGCCATGTTCTGTGGC------------AGACTGAACATGCACATGAATGTCCAGAATGGGAAGTGGGATTCAGATCCATCAGGGACCAAA---------ACCTGCATTGATACCAAGGAAGGCATCCTGCAGTATTGCCAAGAAGTCTACCCTGAACTGCAGATCACCAATGTGGTAGAAGCCAACCAACCAGTGACCATCCAGAACTGGTGCAAGCGGGGC---------CGCAAGCAGTGCAAGACCCATCCC---CACTTTGTGATTCCCTACCGCTGCTTAGTTGGTGAGTTTGTAAGTGATGCCCTTCTCGTTCCTGACAAGTGCAAATTCTTACACCAGGAGAGGATGGATGTTTGCGAAACTCATCTTCACTGGCACACCGTCGCCAAAGAGACATGCAGTGAGAAG------------------AGTACCAACTTGCATGACTACGGCATGTTGCTGCCCTGCGGAATTGACAAGTTCCGAGGGGTAGAGTTTGTGTGTTGCCCA
TRN  10010101100011000
NAM  APLP1_HUMAN/46-211
ASQ  GAAEAPGSAQVAGLCG----RLTLHRDLRTGRWEPDPQRSR---RCLRDPQRVLEYCRQMYPELQIARVEQATQAIPMERWCGGS---RSGSCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRHQEAQEACSSQ------GLILHGSGMLLPCGSDRFRGVEYVCCP
DSQ  GGCGCGGCCGAGGCCCCGGGGTCGGCCCAGGTGGCTGGACTATGCGGG------------CGCCTAACCCTTCACCGGGACCTGCGCACCGGCCGCTGGGAACCAGACCCACAGCGCTCTCGA---------CGCTGTCTCCGGGACCCGCAGCGCGTGCTGGAGTACTGCAGACAGATGTACCCGGAGCTGCAGATTGCACGTGTGGAGCAGGCTACGCAGGCCATCCCCATGGAGCGCTGGTGCGGGGGTTCC---------CGGAGCGGCAGCTGCGCCCACCCCCACCACCAGGTTGTGCCCTTCCGCTGCCTGCCTGGTGAATTTGTGAGTGAGGCCCTGCTGGTGCCTGAAGGCTGCCGGTTCTTGCACCAGGAGCGCATGGACCAATGTGAGAGTTCAACCCGGAGGCATCAGGAGGCACAGGAGGCCTGCAGCTCCCAG------------------GGCCTCATCCTGCACGGCTCGGGCATGCTCTTACCCTGTGGCTCGGATCGGTTCCGTGGTGTGGAGTATGTGTGCTGTCCC
TRN  10010101100011000
NAM  A4_CAEEL/28-196
ASQ  SKRHEKFIPMVAFSCG----YRNQYMTEE-GSWKTDDERYA---TCFSGKLDILKYCRKAYPSMNITNIVEYSHEVSISDWCREE---GSPCKWT--HSVRPYHCIDGEFHSEALQVPHDCQFSHVNSRDQCNDYQHWKDEAGKQCKTKKSKGNKDMIVRSFAVLEPCALDMFTGVEFVCCP
DSQ  AGCAAGCGACATGAGAAGTTCATTCCAATGGTCGCATTTTCATGTGGA------------TACCGCAACCAGTATATGACCGAAGAG---GGATCATGGAAGACTGATGATGAACGATATGCC---------ACCTGCTTCTCTGGCAAACTTGACATCCTCAAGTACTGCCGCAAGGCTTATCCATCCATGAACATCACCAACATCGTCGAATACTCGCACGAAGTGAGCATCTCCGACTGGTGCCGCGAGGAA---------GGATCGCCATGCAAGTGGACT------CACAGTGTCAGACCGTACCATTGCATTGACGGAGAATTCCACTCGGAAGCTCTTCAAGTCCCGCACGACTGTCAATTCTCGCACGTCAACTCGCGCGACCAATGCAACGACTACCAGCACTGGAAGGATGAAGCTGGAAAGCAGTGCAAGACCAAGAAGTCCAAGGGCAACAAGGATATGATTGTCAGATCATTTGCCGTTCTTGAGCCATGCGCACTCGACATGTTCACCGGTGTTGAATTCGTCTGCTGTCCA
TRN  10010101110011001
NAM  A4_DROME/26-198
ASQ  QAASPRWEPQIAVLCEAGQIYQPQYLSEE-GRWVTDLSKKTTGPTCLRDKMDLLDYCKKAYPNRDITNIVESSHYQKIGGWCRQGALNAAKCKGSH-RWIKPFRCL-GPFQSDALLVPEGCLFDHIHNASRCWPFVRWNQTGAAACQER------GMQMRSFAMLLPCGISVFSGVEFVCCP
DSQ  CAGGCCGCATCGCCGCGATGGGAGCCCCAGATTGCCGTTCTCTGTGAGGCCGGACAAATCTACCAGCCGCAGTATCTTTCCGAGGAG---GGACGCTGGGTGACGGACCTTAGCAAGAAGACAACCGGTCCCACATGTTTGCGTGATAAAATGGATTTGCTTGATTACTGCAAGAAGGCCTATCCCAACCGAGACATAACCAACATTGTGGAGTCGTCCCACTACCAGAAGATCGGCGGCTGGTGTCGCCAGGGGGCATTGAATGCGGCTAAGTGCAAGGGATCCCAC---CGATGGATCAAGCCATTCCGCTGTCTC---GGACCATTCCAATCTGACGCCCTGCTAGTTCCCGAGGGCTGTCTGTTCGACCACATCCACAACGCCTCCCGATGCTGGCCATTTGTGAGGTGGAACCAAACCGGAGCAGCCGCTTGCCAGGAGCGC------------------GGAATGCAGATGCGCAGCTTCGCCATGCTTCTGCCCTGCGGAATCTCGGTCTTCTCCGGAGTGGAGTTCGTCTGCTGTCCC
TRN  10010101100011011
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