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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF01752 - Peptidase_M9)
FAM  PF01752
PID  Peptidase_M9
DES  Collagenase
IPR  IPR002169
ANO  7
ALN  318
AID  0.343271
APH  (((COLA_CLOPE/296-601:0.24940,Q46085_CLOHI/250-556:0.37669):3.52236,O86030_VIBCH/1-290:0.04764):0.07217,O67990_VIBMI/268-558:0.10926,((COLA_VIBAL/313-600:0.47512,O54108_STRCO/356-651:0.56732):0.58865,COLA_VIBPA/270-558:0.07433):0.08328);
ATP  (((COLA_CLOPE/296-601,Q46085_CLOHI/250-556),O86030_VIBCH/1-290),O67990_VIBMI/268-558,((COLA_VIBAL/313-600,O54108_STRCO/356-651),COLA_VIBPA/270-558));
ATL  6.16622
DNO  7
DLN  954
DID  0.434604
DPH  ((O67990_VIBMI/268-558:0.12134,(COLA_VIBPA/270-558:0.14527,(O54108_STRCO/356-651:0.50106,COLA_VIBAL/313-600:0.41127):0.34469):0.06923):0.12142,(Q46085_CLOHI/250-556:0.22777,COLA_CLOPE/296-601:0.25485):1.77900,O86030_VIBCH/1-290:0.05199);
DTP  ((O67990_VIBMI/268-558,(COLA_VIBPA/270-558,(O54108_STRCO/356-651,COLA_VIBAL/313-600))),(Q46085_CLOHI/250-556,COLA_CLOPE/296-601),O86030_VIBCH/1-290);
DTL  4.02789
RID  0.343271
RPH  (((COLA_CLOPE/296-601:0.24940,Q46085_CLOHI/250-556:0.37669):3.52236,O86030_VIBCH/1-290:0.04764):0.07217,O67990_VIBMI/268-558:0.10926,((COLA_VIBAL/313-600:0.47512,O54108_STRCO/356-651:0.56732):0.58865,COLA_VIBPA/270-558:0.07433):0.08328);
RTP  (((COLA_CLOPE/296-601,Q46085_CLOHI/250-556),O86030_VIBCH/1-290),O67990_VIBMI/268-558,((COLA_VIBAL/313-600,O54108_STRCO/356-651),COLA_VIBPA/270-558));
RTL  6.16622
LNK  COLA_CLOPE/296-601:P43153:D13791
LNK  COLA_VIBAL/313-600:P43154:X62635
LNK  COLA_VIBPA/270-558:Q56696:AP005085
LNK  O54108_STRCO/356-651:O54108:AL939125
LNK  O67990_VIBMI/268-558:O67990:AF004832
LNK  O86030_VIBCH/1-290:O86030:AF080248
LNK  Q46085_CLOHI/250-556:Q46085:D29981
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  O86030_VIBCH/1-290
ASQ  MRQVIARYPLG----SKHDKLWLAAVEMLHYYAPEVLQQLGIDLDAAKRDLAARILPNRFECQGPAIIRSQDLSDAQAAQACDVLDKKEQDFHQVANTGLAPVADDYNTRVEVVVFANNSSYVNY-LFL-------FGNTTDNGGQYLEGNPADQNNQARFVAYRYANDA-DLSILNLEHEYTHYLDARFNQYGSFSDNLAHGHIVWWLEGFAEYMHYKQG---YQAAVKLISQG-KLSLSDVFATT---Y------SNDTNRIYRWGYLAVRFMLE-KHPQDVESLLALSRTG-QFDQWAQSVKLLGERYNTEFSAW
DSQ  ATGCGACAAGTGATTGCTCGCTATCCTTTAGGG------------AGTAAACACGACAAATTGTGGTTAGCTGCCGTTGAGATGTTGCATTATTACGCACCTGAGGTGCTGCAACAGCTCGGTATCGATCTTGATGCAGCGAAGCGCGATTTAGCCGCGCGCATTTTGCCAAACCGCTTTGAATGCCAAGGCCCTGCCATTATTCGCTCGCAAGATCTTTCCGATGCGCAAGCCGCGCAAGCCTGTGACGTATTGGATAAAAAAGAGCAAGATTTTCACCAAGTGGCAAATACGGGATTGGCACCGGTCGCTGATGATTACAACACTCGCGTTGAGGTGGTGGTGTTTGCCAATAACAGCAGCTATGTCAATTAT---CTGTTTTTA---------------------TTTGGCAATACCACCGACAATGGCGGGCAGTATTTAGAAGGCAACCCTGCGGATCAAAACAATCAAGCCCGTTTTGTCGCCTATCGTTATGCCAATGATGCG---GATTTGTCGATTCTCAATTTAGAGCATGAGTACACTCATTATCTGGACGCGCGCTTCAACCAGTATGGTTCGTTCAGTGATAACTTAGCCCATGGTCATATTGTGTGGTGGTTAGAAGGTTTCGCGGAATATATGCATTATAAGCAGGGC---------TACCAAGCGGCGGTTAAGCTGATTTCTCAAGGT---AAATTGAGCCTTTCTGATGTGTTTGCTACCACC---------TAC------------------TCGAATGATACGAACCGCATTTATCGCTGGGGCTACTTAGCGGTACGCTTTATGTTGGAA---AAGCATCCACAAGACGTGGAAAGCTTGCTGGCACTCTCTCGTACTGGG---CAGTTTGATCAGTGGGCACAGAGTGTCAAATTACTGGGTGAACGCTATAACACCGAGTTTTCGGCGTGG
TRN  11011101101011010
NAM  O67990_VIBMI/268-558
ASQ  MEQTLVRYPLG----SQHDKIWLAAVDMMRYYAPEALQAQGIDFEVAKQELAARILPNRYECQGPAIIRSQDLSDRQAARACDVLNAKEEDFHQVVNSGYVPVADDNTERVEVAVFANNDSYVNYSAFL-------FNNTTDNGGQYLEGNPAEANNQARFVAYRYANGD-DLSILNLEHEYTHYLDARFNQYGTFSDNLAHGHIVWWLEGFAEYMHYKQG---YQAAIELIPQG-KMSLSDVMATT---Y------SHDSNRIYRWGYLAVRFMME-KHPQDVESLLVLSRPG-QFAQWAQTVKNLGEQYNAEFAVW
DSQ  ATGGAACAAACCCTTGTCCGTTACCCTTTAGGC------------AGTCAGCACGACAAAATTTGGCTCGCCGCAGTTGATATGATGCGCTACTACGCGCCAGAGGCTTTGCAAGCACAAGGAATTGACTTTGAGGTAGCAAAACAAGAATTAGCAGCACGCATTTTGCCGAATCGCTATGAGTGCCAAGGTCCGGCAATCATCCGCTCACAAGATCTCTCCGATCGACAAGCGGCTCGAGCTTGTGATGTCCTCAATGCAAAAGAAGAGGATTTCCACCAAGTGGTGAACAGCGGTTACGTGCCGGTCGCCGATGACAACACTGAGCGCGTTGAGGTTGCGGTGTTTGCCAACAACGACAGCTACGTCAATTACTCTGCTTTCTTG---------------------TTTAACAACACCACGGATAATGGTGGGCAATATTTGGAAGGCAACCCTGCTGAAGCCAATAACCAAGCTCGTTTTGTCGCTTATCGTTATGCCAATGGTGAT---GATCTTTCAATTCTGAACTTAGAGCATGAGTACACACACTATTTAGATGCACGTTTCAACCAATACGGTACTTTTAGCGACAACTTGGCTCATGGGCATATTGTTTGGTGGCTAGAAGGGTTTGCCGAGTACATGCATTACAAGCAAGGC---------TATCAAGCCGCGATTGAGCTTATTCCACAAGGC---AAAATGAGCCTTTCTGACGTGATGGCCACCACC---------TAC------------------TCGCACGATTCCAACCGTATTTATCGTTGGGGCTACTTAGCGGTGCGCTTTATGATGGAA---AAACACCCTCAAGACGTCGAAAGCTTGTTGGTACTGTCTCGACCAGGG---CAATTTGCACAATGGGCGCAAACAGTGAAAAACTTAGGTGAACAATACAACGCCGAGTTTGCAGTCTGG
TRN  11011101101011000
NAM  COLA_VIBPA/270-558
ASQ  MQQVMQRYPLG----SEHDKLWLAAVEMMSYYAPEGLNGLN--LEQAKQDLAARVMPNRFECQGPAIIRSEDLTDAQAAKACEVLAAKEADFHQVANTGNQPVADDLNDRVEVAVFASNDSYVDYSSFL-------FGNTTDNGGQYLEGTPSRADNTARFVAYRYANGE-DLSILNLEHEYTHYLDARFNQYGSFSDNLAHGHIVWWLEGFAEYMHYKQG---YKAAIDLIPSG-KLSLSTVFDTT---Y------SHDSNRIYRWGYLAVRFMLE-NHPQDVESLLALSRSG-QFAQWAQQVTVLGQQYDAEFERW
DSQ  ATGCAACAAGTGATGCAGCGTTACCCATTGGGT------------AGTGAGCACGACAAACTGTGGCTTGCCGCCGTTGAGATGATGAGTTACTACGCGCCTGAGGGTTTGAATGGTCTAAAC------CTAGAACAAGCGAAGCAAGATCTAGCAGCACGCGTGATGCCAAATCGTTTCGAATGTCAGGGACCTGCCATCATTCGATCTGAAGATCTCACCGATGCTCAAGCTGCGAAAGCGTGTGAAGTGCTTGCTGCGAAAGAAGCAGACTTCCATCAAGTTGCGAATACTGGCAATCAACCAGTGGCGGATGACTTGAACGATCGTGTTGAAGTCGCGGTGTTTGCAAGCAACGACAGTTACGTTGATTACTCTTCATTCCTG---------------------TTTGGCAATACAACGGATAACGGTGGTCAGTACTTAGAGGGGACTCCGTCAAGAGCCGATAATACGGCGCGTTTTGTGGCTTATCGCTACGCGAATGGCGAA---GATCTATCTATCTTGAACCTTGAGCACGAGTACACTCACTACTTGGATGCACGTTTCAACCAATACGGTTCATTCAGCGACAACTTAGCTCATGGTCATATCGTTTGGTGGCTGGAAGGCTTTGCGGAATACATGCATTACAAACAAGGT---------TACAAGGCCGCGATCGATCTGATCCCAAGTGGC---AAACTGAGTCTTTCAACCGTGTTTGACACCACA---------TAC------------------TCGCACGATAGCAACCGCATTTACCGTTGGGGTTACCTGGCAGTTCGCTTCATGCTAGAA---AACCACCCTCAAGATGTAGAGAGCTTATTGGCGTTGTCTCGTTCAGGT---CAGTTTGCACAATGGGCGCAGCAGGTTACTGTGCTTGGTCAACAATATGATGCGGAATTTGAGCGTTGG
TRN  10010101100011000
NAM  O54108_STRCO/356-651
ASQ  VSPLAGGLLNSSSIKGRTAPLWVGVAEMTDYYDKANCSYYG--TCDLQAQLARSVLTVTYPCSSSITIKAQQMTSGELSSSCSSLRNQDAYFHNVVRD-NGPVANDNNSTIEVVVFDSSTDYQTY-AGA------MYGIDTNNGGMYLEGNPSAAGNQPRFIAYEAEWLRPDFQIWNLNHEYTHYLDGRFDMYGDFNANIT-TPTIWWVEGFAEYVSYSYRGVPYTEATTEAGRR-TYALSTLFDTT---Y------SHDTTRIYRWGYLAVRYMLE-NHRADMDTVLSHYRAGNWNAARSYLTGTIGTRYDNDWYTW
DSQ  GTCAGCCCTCTGGCCGGCGGCCTGCTCAACTCCAGCTCCATCAAGGGCCGGACGGCCCCGCTGTGGGTCGGTGTCGCCGAGATGACCGACTACTACGACAAGGCCAACTGCTCCTACTACGGC------ACCTGCGACCTCCAGGCACAACTGGCCCGCTCCGTCCTGACGGTGACCTACCCATGCAGCTCCAGCATCACCATCAAGGCGCAGCAGATGACCTCGGGCGAGCTGTCCTCCAGCTGCAGCAGCCTGCGCAACCAGGACGCCTACTTCCACAACGTGGTCCGTGAC---AACGGCCCCGTCGCGAACGACAACAACAGCACCATCGAGGTCGTGGTCTTCGACTCCAGCACCGACTACCAGACCTAC---GCCGGCGCG------------------ATGTACGGGATCGACACCAACAACGGCGGCATGTACCTGGAGGGGAATCCGTCGGCGGCCGGCAACCAGCCGCGCTTCATCGCCTACGAGGCCGAGTGGCTGCGTCCGGACTTCCAGATCTGGAACCTCAACCACGAGTACACCCACTACCTCGACGGCCGCTTCGACATGTACGGCGACTTCAACGCCAACATCACC---ACCCCGACCATCTGGTGGGTCGAAGGCTTCGCCGAGTACGTCTCCTACTCCTACCGCGGCGTCCCCTACACCGAGGCCACGACCGAGGCGGGGCGTCGC---ACGTACGCGCTGAGCACCCTGTTCGACACCACG---------TAC------------------AGCCACGACACCACGCGCATCTACCGCTGGGGCTACCTCGCCGTGCGGTACATGCTCGAA---AACCACCGCGCCGACATGGACACCGTCCTCAGCCACTACCGCGCGGGAAACTGGAACGCCGCCCGCAGCTACCTGACCGGCACCATCGGCACCCGCTACGACAACGACTGGTACACCTGG
TRN  11011111101111111
NAM  COLA_VIBAL/313-600
ASQ  LSRIFEQYEMY----GRGDAVWLAAADTASYYA--DCSEFG--ICNFETELKGLVLSQTYTCSPTIRILSQNMTQEQHAAACSKMGYEEGYFHQSLETGEQPVKDDHNTQLQVNIFDSSTDYGKY-AGP------IFDISTDNGGMYLEGDPSQPGNIPNFIAYEASYANADHFVWNLEHEYVHYLDGRFDLYGGFSHPTE--KIVWWSEGIAEYVAQEND---NQAALETILDGSTYTLSEIFETTYDGF--------DVDRIYRWGYLAVRFMFE-NHKDDVNQMLVETRQGNWINYKATITQWAN-LYQSEFEQW
DSQ  CTGAGTCGAATCTTTGAACAGTATGAAATGTAT------------GGTCGGGGTGACGCGGTTTGGCTTGCGGCGGCGGACACCGCCTCATATTACGCA------GATTGTAGTGAGTTCGGA------ATTTGTAATTTCGAAACTGAGCTAAAAGGCTTGGTGCTATCGCAAACTTATACTTGTAGCCCGACAATCCGAATTTTGTCTCAGAATATGACGCAAGAGCAACACGCGGCCGCATGTTCTAAAATGGGTTACGAAGAGGGTTACTTTCATCAGTCATTAGAAACTGGTGAACAGCCAGTAAAAGATGACCACAATACTCAGCTCCAAGTCAATATATTCGATTCAAGTACCGATTATGGTAAGTAC---GCAGGGCCA------------------ATTTTCGATATTAGTACTGACAATGGCGGTATGTACTTGGAGGGCGACCCTTCCCAGCCGGGGAATATTCCCAACTTTATTGCTTATGAAGCCTCTTATGCGAACGCAGATCACTTTGTCTGGAACTTAGAGCACGAATACGTGCATTACTTAGATGGTCGATTTGATCTCTATGGAGGGTTTAGTCATCCAACTGAA------AAAATAGTGTGGTGGAGTGAAGGCATTGCAGAGTATGTCGCTCAAGAAAATGAC---------AACCAAGCAGCACTTGAGACGATTCTAGACGGTTCGACATATACCTTAAGTGAGATTTTCGAGACTACTTATGATGGGTTT------------------------GATGTCGATCGAATTTATCGTTGGGGGTACTTAGCTGTACGTTTTATGTTTGAA---AATCATAAAGATGACGTAAACCAAATGCTGGTGGAAACACGCCAAGGGAATTGGATCAATTACAAGGCCACGATCACCCAATGGGCGAAT---TTGTATCAAAGTGAGTTTGAGCAGTGG
TRN  10010101100011000
NAM  Q46085_CLOHI/250-556
ASQ  INELKKLALYG---KINDNNSWIIDN-GIYHIAPLGKLHSNNKIGIETLTEVMKVYPYLSMQHLQSADQIKRHYDSKDAEGNKIPLDKFKKEGKEKYCPKTYTFDDGKVIIKAGARVEEEKVKRL-YWASKEVNSQFFRVYGIDKPLEEGNPDDILTMVIYNSPEEYKLN-SVLYGYDTNNGGMYIEP-EGTFFTYEREAQESTYTLEELFRHEYTHYLQG---RYAVPGQWGRT-KLYDNDRLTWYEEGGAELFAGSTRTSGILPRKSIVSNIHNTTRNNRYKLSDTVHSKYGASFEFYNYACMFMDYMYNKDMGIL
DSQ  ATAAATGAACTTAAAAAGTTAGCTCTTTATGGA---------AAAATAAATGATAATAACTCTTGGATAATAGATAAC---GGTATATATCATATAGCACCTTTAGGGAAGTTACATAGCAATAATAAAATAGGAATAGAAACTTTAACAGAGGTTATGAAAGTTTATCCTTATTTAAGTATGCAACATTTACAATCAGCAGATCAAATTAAGCGTCATTATGATTCAAAAGATGCTGAAGGAAACAAAATACCTTTAGATAAGTTTAAAAAGGAAGGAAAAGAAAAATACTGTCCAAAAACTTATACATTTGATGATGGAAAAGTAATAATAAAAGCTGGTGCTAGAGTAGAAGAAGAAAAAGTTAAAAGACTA---TACTGGGCATCAAAGGAAGTTAACTCTCAATTCTTTAGAGTATACGGAATAGACAAACCATTAGAAGAAGGTAATCCAGATGATATATTAACAATGGTTATCTACAACAGTCCCGAAGAATATAAACTCAAT---AGTGTTCTATACGGATATGATACTAATAATGGTGGTATGTATATAGAGCCA---GAAGGAACTTTCTTCACCTATGAAAGAGAAGCTCAAGAAAGCACATACACATTAGAAGAATTATTTAGACATGAATATACACATTATTTGCAAGGA---------AGATATGCAGTTCCAGGACAATGGGGAAGAACA---AAACTTTATGACAATGATAGATTAACTTGGTATGAAGAAGGTGGAGCAGAATTATTTGCAGGTTCTACTAGAACTTCTGGAATATTACCAAGAAAGAGTATAGTATCAAATATTCATAATACAACAAGAAATAATAGATATAAGCTTTCAGACACTGTACATTCTAAATATGGTGCTAGTTTTGAATTCTATAATTATGCATGTATGTTTATGGATTATATGTATAATAAAGATATGGGTATATTA
TRN  10010101110011000
NAM  COLA_CLOPE/296-601
ASQ  MERLESLCTIGD--KLNNDNAWLVNN-ALYYTGRMGKFREDPSISQRALERAMKEYPYLSYQYIEAANDLDLNFGGKNSSGNDIDFNKIKADAREKYLPKTYTFDDGKFVVKAGDKVTEEKIKRL-YWASKEVKAQFMRVVQNDKALEEGNPDDILTVVIYNSPEEYKLN-RIINGFSTDNGGIYIEN-IGTFFTYERTPEESIYTLEELFRHEFTHYLQG---RYVVPGMWGQG-EFYQEGVLTWYEEGTAEFFAGSTRTDGIKPRKSVTQGLAYD-RNNRMSLYGVLHAKYG-SWDFYNYGFALSNYMYNNNMGMF
DSQ  ATGGAAAGATTAGAAAGTTTATGTACAATAGGTGAT------AAGTTAAATAATGATAATGCTTGGCTTGTAAATAAT---GCCTTATATTACACAGGTAGAATGGGTAAGTTTAGAGAAGACCCATCAATATCTCAAAGAGCTTTAGAAAGAGCTATGAAGGAGTATCCTTATTTATCATATCAATATATTGAAGCTGCCAATGATTTAGATTTAAATTTTGGTGGCAAAAATTCATCAGGAAATGATATAGATTTCAATAAGATAAAAGCAGATGCAAGGGAAAAATATCTTCCAAAAACATATACTTTTGATGATGGTAAATTTGTAGTAAAAGCTGGTGATAAAGTAACAGAAGAGAAGATAAAAAGATTA---TATTGGGCTTCAAAGGAAGTTAAGGCTCAATTCATGAGAGTAGTTCAAAATGATAAGGCTTTAGAAGAGGGAAATCCAGATGATATTTTAACTGTTGTTATTTATAACTCACCAGAAGAGTATAAGTTAAAT---CGTATAATAAATGGATTTAGTACTGATAATGGTGGTATATATATTGAAAAC---ATAGGAACTTTCTTTACTTATGAAAGAACACCAGAGGAAAGTATATATACATTAGAAGAATTATTCCGTCATGAATTTACTCACTATCTTCAAGGT---------AGATATGTAGTTCCTGGAATGTGGGGGCAAGGA---GAATTCTATCAAGAGGGAGTTTTAACTTGGTATGAAGAAGGAACAGCAGAGTTCTTTGCAGGTTCAACTAGAACTGATGGAATAAAACCAAGAAAATCAGTTACACAAGGGTTAGCTTACGAT---AGAAATAATAGAATGTCTTTATATGGTGTATTACATGCTAAATATGGC---TCATGGGATTTCTATAATTATGGATTTGCTCTATCAAACTACATGTACAACAATAACATGGGAATGTTT
TRN  10010101110011000
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