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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF01455 - HupF_HypC)
FAM  PF01455
PID  HupF_HypC
DES  HupF/HypC family
IPR  IPR001109
ANO  19
ALN  94
AID  0.341619
APH  ((((((((((HYPC_ALCEU/1-73:0.25746,(HYPC_AZOCH/1-80:0.36633,HYPC_RHILV/1-71:0.26606):0.09668):0.14580,HYPC_SYNY3/1-76:0.47227):0.20425,(O27686_METTH/1-74:0.28865,Y200_METJA/1-77:0.39883):0.37613):0.07711,(O69402_DESGI/1-77:1.07541,O28902_ARCFU/1-73:0.36834):0.22821):0.12258,O25559_HELPY/1-73:0.53375):0.20315,(HYPC_ECOLI/1-81:0.37443,(HYPC_RHOCA/1-82:0.51420,(HYBG_ECOLI/1-79:0.26963,YFRC_PROVU/1-82:0.27302):0.03006):0.18580):0.14848):0.59695,(HUPF_BRAJA/1-81:0.52708,HUPF_RHILV/1-81:0.64373):0.19068):0.33661,HUPF_RHOCA/1-81:0.84969):0.25151,HOXL_AZOVI/1-82:0.54105):0.26068,HOXL_ALCEU/1-71:0.30958,P95497_9PSED/1-82:0.07862);
ATP  ((((((((((HYPC_ALCEU/1-73,(HYPC_AZOCH/1-80,HYPC_RHILV/1-71)),HYPC_SYNY3/1-76),(O27686_METTH/1-74,Y200_METJA/1-77)),(O69402_DESGI/1-77,O28902_ARCFU/1-73)),O25559_HELPY/1-73),(HYPC_ECOLI/1-81,(HYPC_RHOCA/1-82,(HYBG_ECOLI/1-79,YFRC_PROVU/1-82)))),(HUPF_BRAJA/1-81,HUPF_RHILV/1-81)),HUPF_RHOCA/1-81),HOXL_AZOVI/1-82),HOXL_ALCEU/1-71,P95497_9PSED/1-82);
ATL  11.9335
DNO  18
DLN  282
DID  0.462281
DPH  (((((((((HYPC_AZOCH/1-80:0.23238,HYPC_ALCEU/1-73:0.28755):0.12153,HYPC_RHILV/1-71:0.25070):0.17319,O28902_ARCFU/1-73:0.36816):0.06488,((O69402_DESGI/1-77:0.50971,HYPC_SYNY3/1-76:0.35203):0.06573,(O25559_HELPY/1-73:0.46983,(O27686_METTH/1-74:0.31268,Y200_METJA/1-77:0.37667):0.11099):0.07721):0.06015):0.15292,(HYBG_ECOLI/1-79:0.23285,YFRC_PROVU/1-82:0.26159):0.14103):0.05549,HYPC_ECOLI/1-81:0.27171):0.33966,(HUPF_BRAJA/1-81:0.27503,HUPF_RHILV/1-81:0.35829):0.10568):0.18109,(HUPF_RHOCA/1-81:0.37798,HOXL_AZOVI/1-82:0.28069):0.08999):0.19385,HOXL_ALCEU/1-71:0.26894,P95497_9PSED/1-82:0.14709);
DTP  (((((((((HYPC_AZOCH/1-80,HYPC_ALCEU/1-73),HYPC_RHILV/1-71),O28902_ARCFU/1-73),((O69402_DESGI/1-77,HYPC_SYNY3/1-76),(O25559_HELPY/1-73,(O27686_METTH/1-74,Y200_METJA/1-77)))),(HYBG_ECOLI/1-79,YFRC_PROVU/1-82)),HYPC_ECOLI/1-81),(HUPF_BRAJA/1-81,HUPF_RHILV/1-81)),(HUPF_RHOCA/1-81,HOXL_AZOVI/1-82)),HOXL_ALCEU/1-71,P95497_9PSED/1-82);
DTL  7.5434
RID  0.33925
RPH  ((O25559_HELPY/1-73:0.54111,(O27686_METTH/1-74:0.32801,Y200_METJA/1-77:0.36372):0.33193):0.14156,(O69402_DESGI/1-77:1.07167,O28902_ARCFU/1-73:0.37630):0.24413,((((HUPF_RHOCA/1-81:0.84727,(HOXL_AZOVI/1-82:0.52664,(HOXL_ALCEU/1-71:0.30892,P95497_9PSED/1-82:0.07942):0.27600):0.25975):0.35645,(HUPF_BRAJA/1-81:0.48656,HUPF_RHILV/1-81:0.67483):0.18285):0.58260,(HYPC_ECOLI/1-81:0.33197,(HYBG_ECOLI/1-79:0.30121,YFRC_PROVU/1-82:0.24494):0.19548):0.22090):0.26494,((HYPC_AZOCH/1-80:0.34516,(HYPC_ALCEU/1-73:0.27495,HYPC_RHILV/1-71:0.31066):0.08254):0.15058,HYPC_SYNY3/1-76:0.43973):0.25078):0.00281);
RTP  ((O25559_HELPY/1-73,(O27686_METTH/1-74,Y200_METJA/1-77)),(O69402_DESGI/1-77,O28902_ARCFU/1-73),((((HUPF_RHOCA/1-81,(HOXL_AZOVI/1-82,(HOXL_ALCEU/1-71,P95497_9PSED/1-82))),(HUPF_BRAJA/1-81,HUPF_RHILV/1-81)),(HYPC_ECOLI/1-81,(HYBG_ECOLI/1-79,YFRC_PROVU/1-82))),((HYPC_AZOCH/1-80,(HYPC_ALCEU/1-73,HYPC_RHILV/1-71)),HYPC_SYNY3/1-76)));
RTL  11.3964
LNK  HOXL_ALCEU/1-71:P31899:M96433
LNK  HOXL_AZOVI/1-82:P40592:M80522
LNK  HUPF_BRAJA/1-81:Q45252:L24446
LNK  HUPF_RHILV/1-81:P27651:X52974
LNK  HUPF_RHOCA/1-81:Q03005:Z15089
LNK  HYBG_ECOLI/1-79:P37185:U09177
LNK  HYPC_ALCEU/1-73:P31900:X70183
LNK  HYPC_AZOCH/1-80:Q43951:L00674
LNK  HYPC_ECOLI/1-81:P24191:X54543
LNK  HYPC_RHILV/1-71:P28157:X52974
LNK  HYPC_RHOCA/1-82:P40428:
LNK  HYPC_SYNY3/1-76:P74095:D90912
LNK  O25559_HELPY/1-73:O25559:AE000599
LNK  O27686_METTH/1-74:O27686:AE000924
LNK  O28902_ARCFU/1-73:O28902:AE001009
LNK  O69402_DESGI/1-77:O69402:AJ223629
LNK  P95497_9PSED/1-82:P95497:D86986
LNK  Y200_METJA/1-77:Q57653:U67476
LNK  YFRC_PROVU/1-82:P20927:X06151
AMK  xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx
NAM  YFRC_PROVU/1-82
ASQ  MCLGIPGQVVEVGKTIT...eNALVDVCGVKREVNIALVCEGEP.-DTMIGKWVLVHVGFAMSIVNEQEAQETLNALMAMGEV----.--EDDV
DSQ  ATGTGCCTTGGTATTCCAGGTCAAGTTGTTGAAGTGGGAAAAACCATCACT.........gaaAATGCATTGGTCGATGTTTGTGGTGTTAAGCGTGAAGTGAATATCGCATTAGTTTGTGAAGGCGAGCCT...---GATACGATGATTGGTAAGTGGGTATTAGTGCATGTGGGTTTTGCCATGAGTATCGTTAACGAACAAGAAGCACAAGAAACCCTTAACGCATTGATGGCGATGGGGGAAGTC------------...------GAAGACGATGTG
TRN  11011101111011010
NAM  HYBG_ECOLI/1-79
ASQ  MCIGVPGQVLAVGEDIH...qLAQVEVCGIKRDVNIALICEGNP.-ADLLGQWVLVHVGFAMSIIDEDEAKATLDALRQM-------.--DYDI
DSQ  ATGTGTATTGGCGTTCCAGGCCAGGTGCTGGCTGTCGGTGAAGATATTCAC.........cagCTTGCGCAGGTTGAAGTATGTGGTATCAAGCGCGATGTGAATATCGCCCTGATTTGTGAAGGTAACCCT...---GCCGATCTACTGGGCCAGTGGGTGCTGGTACACGTCGGATTTGCCATGAGCATCATCGACGAAGATGAAGCCAAAGCCACATTAGACGCACTGCGCCAAATG---------------------...------GATTACGACATT
TRN  11011101101011010
NAM  HYPC_ECOLI/1-81
ASQ  MCIGVPGQIRTIDGNQ-....-AKVDVCGIQRDVDLTLVGSCDEnGQPRVGQWVLVHVGFAMSVINEAEARDTLDALQNMFDV----.--EPDV
DSQ  ATGTGCATAGGCGTTCCCGGCCAGATCCGCACCATTGACGGCAACCAG---............---GCGAAAGTCGACGTCTGCGGCATTCAGCGCGATGTCGATTTAACGTTAGTCGGCAGCTGCGATGAAaacGGTCAGCCGCGCGTGGGCCAGTGGGTACTGGTACACGTTGGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTT------------...------GAGCCGGATGTC
TRN  10010101100011010
NAM  HYPC_RHOCA/1-82
ASQ  MCLGIPGQIVAITDAGR...mMALADVSGVKRAVNVACVAEGPL.-EDLLGHWALIHVGFAMSLIDEAEAARTLEALRDLGEA----.--QETL
NAM  O28902_ARCFU/1-73
ASQ  MCIAIPGRIERIDYPI-....-AIVDFKGLKKEVRIDLLE----.-NPQIGDYVLVHVGMAIQKVDEEEAKKTWELLERVA------.--DETG
DSQ  ATGTGCATAGCGATTCCGGGCAGAATTGAGAGAATTGACTACCCCATC---............---GCCATCGTGGACTTCAAGGGGTTGAAGAAGGAGGTGAGGATAGACCTCCTCGAA------------...---AATCCGCAGATTGGAGATTACGTTCTCGTCCACGTCGGGATGGCCATTCAGAAGGTCGATGAGGAGGAGGCAAAAAAGACTTGGGAGTTGCTGGAGAGAGTTGCA------------------...------GATGAAACCGGT
TRN  10010101100011011
NAM  Y200_METJA/1-77
ASQ  MCLAIPCKVVEIIEEDGe..kYAIAEYKGVKQKAKLTLLDK---.-EVKIGDYILIHTGYALEVLSEEDAKLSLEAWEEL-------.--FKAL
DSQ  ATGTGTCTGGCAATTCCATGTAAGGTTGTTGAGATTATAGAGGAAGATGGAgag......aaaTACGCAATAGCTGAATATAAAGGAGTTAAGCAAAAGGCAAAATTAACACTTTTAGATAAG---------...---GAGGTTAAAATAGGAGATTATATATTAATCCACACTGGCTATGCTTTAGAAGTTTTAAGTGAAGAAGATGCTAAATTAAGTTTAGAAGCTTGGGAAGAATTG---------------------...------TTTAAAGCATTG
TRN  10010101100011010
NAM  O27686_METTH/1-74
ASQ  MCIAAPAQIIEIDSEDN....IATVDFGGVRQQVKLDLVD----.-DVEEGKYVLVHSGYAIEVMSDEAARESLEAWDEL-------.--LKAL
DSQ  ATGTGTATTGCAGCACCTGCTCAGATTATTGAAATTGATAGTGAGGATAAC............ATTGCCACCGTTGACTTCGGTGGTGTGAGGCAACAGGTCAAACTTGACCTTGTGGAT------------...---GATGTTGAGGAGGGCAAGTATGTTCTTGTTCACTCAGGCTACGCCATTGAGGTGATGTCTGATGAGGCGGCAAGGGAGTCCCTTGAAGCCTGGGATGAACTT---------------------...------CTGAAGGCCCTC
TRN  10010101100011001
NAM  O25559_HELPY/1-73
ASQ  MCLAIPSKVIAIKDNV-....-VLLETLGVQREASLDLMG----.ESVKVGDYVLLHIGYVMSKIDEKEALESIELYQEM-------.--IARM
DSQ  ATGTGTTTAGCGATCCCCTCTAAAGTCATAGCCATTAAGGATAATGTG---............---GTGCTTTTGGAAACTTTGGGCGTTCAAAGAGAGGCGAGCTTGGATTTAATGGGC------------...GAGTCCGTTAAAGTGGGCGATTATGTGCTGTTGCACATCGGCTATGTGATGAGCAAGATTGATGAAAAAGAAGCCCTAGAATCCATTGAGCTTTATCAAGAAATG---------------------...------ATCGCCAGAATG
TRN  10010101100011010
NAM  HYPC_SYNY3/1-76
ASQ  MCLALPGQVVSLMPNSDplllTGKVSFGGIIKTISLAYVP----.-EVKVGDYVIVHVGFAISIVDEEAAQETLIDLA---------.--EMGV
DSQ  ATGTGTCTAGCCCTACCTGGCCAGGTTGTCAGTTTAATGCCCAACTCCGATcccctgttactgACGGGAAAGGTTAGCTTTGGGGGCATCATTAAAACCATTAGCCTTGCCTACGTACCC------------...---GAGGTTAAGGTGGGGGATTACGTGATTGTCCATGTGGGCTTTGCCATTAGCATTGTGGACGAAGAGGCGGCCCAGGAAACTTTGATAGACTTGGCA---------------------------...------GAAATGGGAGTT
TRN  10010101100011010
NAM  HYPC_RHILV/1-71
ASQ  MCLAIPVQVKELLPDN-....MAKVTLDGVSKIVSTALVD----.-DVKVGDYVVLHVGYALAKIDPEEAERTLALIR---------.--ERAM
DSQ  ATGTGCCTAGCCATACCTGTCCAGGTTAAGGAATTGCTGCCCGACAAC---............ATGGCGAAGGTCACGCTCGACGGCGTCTCGAAAATCGTTTCGACGGCGCTCGTCGAT------------...---GATGTGAAGGTGGGCGATTATGTCGTCCTCCATGTCGGTTATGCCCTGGCGAAGATCGATCCAGAGGAGGCGGAGAGGACGCTGGCTTTGATCCGC---------------------------...------GAACGTGCGATG
TRN  10010101100011011
NAM  HYPC_ALCEU/1-73
ASQ  MCLAIPARLVELQADQ-....QGVVDLSGVRKTISLALMA----.-DAVVGDYVIVHVGYAIGKIDPEEAERTLRLFAEL-------.--ERVQ
DSQ  ATGTGCCTAGCGATTCCCGCACGTTTGGTGGAACTGCAAGCGGACCAG---............CAGGGCGTAGTCGACCTGAGCGGTGTACGTAAGACCATATCTCTCGCGCTGATGGCC------------...---GATGCCGTAGTCGGTGACTACGTCATCGTGCATGTCGGCTACGCGATTGGCAAGATCGATCCAGAGGAAGCAGAACGCACGCTGCGTCTGTTCGCGGAATTG---------------------...------GAGCGAGTGCAG
TRN  10010111100111011
NAM  HYPC_AZOCH/1-80
ASQ  MCLAIPVRIEELLDEQ-....SAVACIGGLRKTINVALLD----.-DLKVGDYVILHVGFALQKLDEAEARRTLALLAELGQLAEAE.--QAAQ
DSQ  ATGTGCCTGGCCATTCCGGTCCGCATCGAGGAACTGCTCGACGAACAG---............AGCGCGGTCGCCTGCATCGGCGGCCTGCGCAAGACCATCAACGTCGCCCTGCTCGAC------------...---GACCTGAAAGTGGGCGACTACGTGATCCTGCACGTCGGCTTCGCCCTGCAGAAGCTCGACGAGGCCGAGGCACGGCGCACCCTGGCACTGCTCGCCGAACTCGGCCAACTGGCCGAGGCCGAG...------CAGGCCGCGCAG
TRN  11011101101011011
NAM  O69402_DESGI/1-77
ASQ  MCLAIPARIETIENGV-....-ATCRVGASDTFVKASLLLLEG-.-QAGPGDYLVVHAGFALRKMDVKEAEESLQVMRDMAA-----.--VMNG
DSQ  ATGTGCCTTGCCATTCCCGCCCGTATTGAAACCATTGAAAATGGCGTG---............---GCCACCTGCCGCGTGGGAGCCAGCGACACCTTTGTCAAAGCCTCCCTGCTGCTGCTGGAAGGC---...---CAGGCTGGCCCCGGGGACTACCTGGTGGTGCATGCCGGCTTTGCCCTGCGCAAGATGGACGTCAAGGAAGCCGAAGAATCTCTGCAAGTCATGCGGGACATGGCCGCG---------------...------GTGATGAACGGC
TRN  11011101101011011
NAM  P95497_9PSED/1-82
ASQ  MCIGIPMRVLAVEPGN-....-ALCLGRGGQRRISTILVG----.-ECRAGDWLLVFLDSARERIDAARAAEIDATLDLLQAALTDQpAAAGEA
DSQ  ATGTGTATCGGCATTCCGATGCGTGTGCTGGCGGTCGAGCCCGGTAAC---............---GCGTTATGTCTCGGGCGCGGCGGACAGCGGCGCATCTCGACCATCCTCGTCGGC------------...---GAGTGCCGCGCGGGGGACTGGTTGCTGGTATTTCTCGACTCGGCGCGCGAACGTATCGATGCCGCACGTGCGGCGGAGATAGACGCAACGCTCGATTTGCTGCAGGCCGCGCTGACCGATCAGccgGCAGCGGCGGGCGAAGCC
TRN  10010111100111010
NAM  HOXL_ALCEU/1-71
ASQ  MCIGIPMQVMAIEPGY-....-AVCAGRGERRRVSSALVG----.-DCQQGDWLLVFLDSARERIDALRAHEIDATLD-M-------.--LQAA
DSQ  ATGTGTATTGGCATTCCCATGCAGGTCATGGCGATCGAGCCTGGATAT---............---GCGGTCTGTGCGGGACGCGGCGAACGACGGAGAGTCTCGAGCGCGCTGGTTGGT------------...---GACTGCCAGCAGGGCGACTGGCTGCTGGTCTTCCTGGATTCGGCGCGTGAGCGGATCGATGCGCTCAGGGCGCATGAAATCGATGCCACGCTGGAT---ATG---------------------...------CTGCAAGCGGCC
TRN  10010101100011011
NAM  HOXL_AZOVI/1-82
ASQ  MCIGIPLRVLECAPGR-....-ALCGDENGVRWIDTRLVE----.-PPAPGDWLLVFLDAAREILDAGRAARIREALRALQAVQAGDpAALAGL
DSQ  ATGTGCATCGGTATTCCCCTGCGGGTGCTGGAATGCGCGCCGGGCCGC---............---GCCCTGTGCGGCGACGAGAACGGCGTGCGGTGGATCGACACGCGGCTGGTCGAG------------...---CCGCCGGCGCCCGGCGACTGGCTGCTGGTGTTCCTCGACGCCGCCCGCGAAATCCTCGACGCCGGGCGCGCCGCGCGGATCCGCGAGGCCCTGCGCGCGCTGCAGGCCGTACAGGCGGGCGATccgGCCGCGCTCGCCGGCCTG
TRN  11011111101111111
NAM  HUPF_RHILV/1-81
ASQ  MCIGIPMRVVVGSEFI-....-AQCERHGAISSISLMLVG----.-PQAPGTHLLTHLGSAIRVLDADEARAIDDALAGLAEAVEGR.AFDMLF
DSQ  ATGTGCATCGGCATTCCCATGCGGGTCGTCGTCGGCAGCGAGTTCATC---............---GCGCAATGCGAGCGCCATGGCGCGATCTCCTCGATTTCCCTGATGCTGGTCGGC------------...---CCGCAGGCGCCCGGAACCCATCTGCTCACCCATCTCGGCTCGGCCATCCGCGTGCTCGATGCCGACGAGGCCCGCGCAATCGACGACGCGCTCGCCGGACTTGCCGAAGCGGTGGAGGGAAGA...GCCTTCGATATGCTCTTC
TRN  10010101100011011
NAM  HUPF_BRAJA/1-81
ASQ  MCLGLPMTIVETDGVS-....-ALCAFRGEQRRVSMLLLS----.-NPPVGTHVLVYIDTAIRLLDEEEARLIGAAIDGLGAALDGE.DCDRFF
DSQ  ATGTGCCTCGGCTTGCCGATGACGATTGTCGAGACGGATGGCGTCTCG---............---GCGCTGTGCGCATTTCGCGGCGAACAGCGCCGCGTCTCCATGCTGCTGCTCTCC------------...---AACCCGCCGGTCGGCACCCACGTGCTGGTCTATATCGACACCGCGATCCGGCTTCTCGATGAGGAAGAGGCGCGCCTGATTGGCGCCGCGATCGACGGTCTTGGTGCTGCGCTCGACGGTGAG...GATTGCGACCGCTTCTTC
TRN  11011111101111111
NAM  HUPF_RHOCA/1-81
ASQ  MCVGIPVQLLAVDGIR-....-GDVIEDGRPGLVDLSLVP----.-EARPGDWVLAFLGAAREVLTPEAAAQISAALGGLRSLMAGG.DLGDAF
DSQ  ATGTGCGTCGGCATTCCCGTGCAATTGCTGGCGGTGGACGGCATCCGT---............---GGCGACGTGATCGAGGACGGCCGCCCCGGTCTGGTCGATCTGTCGCTGGTGCCC------------...---GAGGCGCGGCCGGGCGACTGGGTCCTGGCCTTCCTTGGTGCCGCCCGCGAGGTGCTGACCCCCGAAGCCGCCGCGCAGATTTCCGCCGCGCTGGGCGGGCTGCGGTCGCTGATGGCGGGCGGC...GATCTTGGCGATGCCTTC
TRN  11011111101111111
//