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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF01429 - MBD)
FAM  PF01429
PID  MBD
DES  Methyl-CpG binding domain
IPR  IPR001739
ANO  18
ALN  152
AID  0.241081
APH  ((Q9SNC0_ARATH/25-137:1.02093,(MBD4_HUMAN/76-151:0.57107,Q9YGC6_XENLA/91-166:0.49372):0.18072):0.10483,((Q9SLR5_WHEAT/1-107:1.87118,O49655_ARATH/104-177:0.86792):0.15781,(((Q9V424_DROME/9-126:0.45978,Q9VHB7_DROME/9-100:0.21732):0.79315,Q9PUM9_XENLA/1-71:0.08133):0.15550,MBD1_MOUSE/1-72:0.62067):0.40335):0.16886,((Q9XI36_ARATH/4-77:1.23663,Q9VGA4_DROME/445-519:0.79618):0.22104,(Q9SGH2_ARATH/258-374:1.50558,((((BAZ2B_HUMAN/543-617:0.13880,BAZ2A_HUMAN/519-593:0.51630):0.29624,Q23590_CAEEL/323-398:0.32598):0.44909,(YNCA_CAEEL/824-900:0.68413,SETB1_HUMAN/594-668:1.04960):0.34834):0.64284,Q9VCG5_DROME/35-106:0.81213):0.47992):0.13883):0.14084);
ATP  ((Q9SNC0_ARATH/25-137,(MBD4_HUMAN/76-151,Q9YGC6_XENLA/91-166)),((Q9SLR5_WHEAT/1-107,O49655_ARATH/104-177),(((Q9V424_DROME/9-126,Q9VHB7_DROME/9-100),Q9PUM9_XENLA/1-71),MBD1_MOUSE/1-72)),((Q9XI36_ARATH/4-77,Q9VGA4_DROME/445-519),(Q9SGH2_ARATH/258-374,((((BAZ2B_HUMAN/543-617,BAZ2A_HUMAN/519-593),Q23590_CAEEL/323-398),(YNCA_CAEEL/824-900,SETB1_HUMAN/594-668)),Q9VCG5_DROME/35-106))));
ATL  17.9506
DNO  17
DLN  456
DID  0.365621
DPH  (((Q9V424_DROME/9-126:0.25133,Q9VHB7_DROME/9-100:0.19307):0.40583,(Q9PUM9_XENLA/1-71:0.25008,MBD1_MOUSE/1-72:0.48767):0.12020):0.25064,((YNCA_CAEEL/824-900:0.82399,(Q9SGH2_ARATH/258-374:0.73978,(BAZ2B_HUMAN/543-617:0.24590,BAZ2A_HUMAN/519-593:0.39834):0.18143):0.12249):0.20586,((SETB1_HUMAN/594-668:0.67381,Q9SLR5_WHEAT/1-107:0.76159):0.23297,O49655_ARATH/104-177:0.52290):0.24128):0.11543,(((Q9VCG5_DROME/35-106:0.70231,(Q9XI36_ARATH/4-77:0.74706,Q9VGA4_DROME/445-519:0.42132):0.21538):0.12979,Q9SNC0_ARATH/25-137:0.50044):0.19828,(MBD4_HUMAN/76-151:0.37051,Q9YGC6_XENLA/91-166:0.39522):0.07609):0.15646);
DTP  (((Q9V424_DROME/9-126,Q9VHB7_DROME/9-100),(Q9PUM9_XENLA/1-71,MBD1_MOUSE/1-72)),((YNCA_CAEEL/824-900,(Q9SGH2_ARATH/258-374,(BAZ2B_HUMAN/543-617,BAZ2A_HUMAN/519-593))),((SETB1_HUMAN/594-668,Q9SLR5_WHEAT/1-107),O49655_ARATH/104-177)),(((Q9VCG5_DROME/35-106,(Q9XI36_ARATH/4-77,Q9VGA4_DROME/445-519)),Q9SNC0_ARATH/25-137),(MBD4_HUMAN/76-151,Q9YGC6_XENLA/91-166)));
DTL  11.1374
RID  0.237856
RPH  ((Q9SNC0_ARATH/25-137:1.03065,(MBD4_HUMAN/76-151:0.57111,Q9YGC6_XENLA/91-166:0.49517):0.16552):0.09199,((Q9SLR5_WHEAT/1-107:1.87050,O49655_ARATH/104-177:0.86782):0.15499,(((Q9V424_DROME/9-126:0.45805,Q9VHB7_DROME/9-100:0.21748):0.78968,Q9PUM9_XENLA/1-71:0.08206):0.15444,MBD1_MOUSE/1-72:0.61938):0.40551):0.18515,((Q9XI36_ARATH/4-77:1.23797,Q9VGA4_DROME/445-519:0.79761):0.24669,(Q9SGH2_ARATH/258-374:1.41847,(((BAZ2B_HUMAN/543-617:0.12595,BAZ2A_HUMAN/519-593:0.52536):0.72683,(YNCA_CAEEL/824-900:0.62658,SETB1_HUMAN/594-668:1.13430):0.29901):0.69551,Q9VCG5_DROME/35-106:0.83995):0.36760):0.23481):0.12564);
RTP  ((Q9SNC0_ARATH/25-137,(MBD4_HUMAN/76-151,Q9YGC6_XENLA/91-166)),((Q9SLR5_WHEAT/1-107,O49655_ARATH/104-177),(((Q9V424_DROME/9-126,Q9VHB7_DROME/9-100),Q9PUM9_XENLA/1-71),MBD1_MOUSE/1-72)),((Q9XI36_ARATH/4-77,Q9VGA4_DROME/445-519),(Q9SGH2_ARATH/258-374,(((BAZ2B_HUMAN/543-617,BAZ2A_HUMAN/519-593),(YNCA_CAEEL/824-900,SETB1_HUMAN/594-668)),Q9VCG5_DROME/35-106))));
RTL  17.5618
LNK  BAZ2A_HUMAN/519-593:Q9UIF9:AB032254
LNK  BAZ2B_HUMAN/543-617:Q9UIF8:AB032255
LNK  MBD1_MOUSE/1-72:Q9Z2E2:AF072240
LNK  MBD4_HUMAN/76-151:O95243:AF072250
LNK  O49655_ARATH/104-177:O49655:AL021635
LNK  Q23590_CAEEL/323-398:Q23590:
LNK  Q9PUM9_XENLA/1-71:Q9PUM9:AF170346
LNK  Q9SGH2_ARATH/258-374:Q9SGH2:AC010870
LNK  Q9SLR5_WHEAT/1-107:Q9SLR5:AB030709
LNK  Q9SNC0_ARATH/25-137:Q9SNC0:AL133314
LNK  Q9V424_DROME/9-126:Q9V424:AE003683
LNK  Q9VCG5_DROME/35-106:Q9VCG5:AE003745
LNK  Q9VGA4_DROME/445-519:Q9VGA4:AE003695
LNK  Q9VHB7_DROME/9-100:Q9VHB7:AE003683
LNK  Q9XI36_ARATH/4-77:Q9XI36:AC007591
LNK  Q9YGC6_XENLA/91-166:Q9YGC6:AF106951
LNK  SETB1_HUMAN/594-668:Q15047:BC028671
LNK  YNCA_CAEEL/824-900:P34544:L07144
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  MBD1_MOUSE/1-72
ASQ  MAESWQDCPALGPGWKRRESFRKSGASF-................---GRSDIYYQS...........P-TGEKIRSKVELTRYLGPACD-------------.......----------------------------LTLFDFRQGTLCHP
DSQ  ATGGCTGAGTCCTGGCAGGACTGCCCAGCCCTGGGCCCTGGCTGGAAACGCCGAGAGTCCTTTCGAAAGTCAGGGGCCTCGTTT---................................................---------GGACGCTCAGACATCTATTACCAGAGC.................................CCC---ACAGGAGAAAAGATCCGAAGCAAAGTTGAGCTGACTCGGTACTTGGGCCCTGCATGTGAT---------------------------------------.....................------------------------------------------------------------------------------------CTTACCCTGTTTGACTTCAGACAAGGCACCTTATGCCATCCC
TRN  10010101100011000
NAM  Q9PUM9_XENLA/1-71
ASQ  MEKKRWECSAL-QGWKKEEVTRRSGLSA-................---GKSDVYYYS...........P-SGKKFRSKPQLARYLGNSMD-------------.......----------------------------LSTFDFRTGKMLMS
DSQ  ATGGAGAAAAAGCGATGGGAGTGCTCGGCTCTC---CAGGGCTGGAAAAAGGAGGAGGTTACTCGAAGGTCTGGCCTCTCCGCC---................................................---------GGCAAGAGCGATGTCTATTACTATAGC.................................CCA---AGTGGGAAGAAATTCCGCAGTAAGCCTCAGCTTGCTCGTTACTTAGGAAACTCCATGGAT---------------------------------------.....................------------------------------------------------------------------------------------CTCAGCACATTTGACTTTCGTACAGGAAAAATGCTCATGAGC
TRN  10010101110011010
NAM  Q9YGC6_XENLA/91-166
ASQ  DRGPMYEDPTLPEGWTRKLKQRKSGRSA-................---GKFDVYLIN...........P-NGKAFRSKVELIAYFQKVGD-------------.......------------------------TSLDPNDFDFTVTGRGSP
DSQ  GACAGGGGTCCCATGTACGAAGACCCCACTCTTCCTGAAGGCTGGACACGAAAACTCAAGCAAAGAAAATCTGGTCGTTCTGCT---................................................---------GGAAAATTTGATGTATATTTAATCAAC.................................CCT---AATGGAAAAGCTTTTCGGTCCAAAGTTGAGCTTATAGCATACTTCCAAAAGGTAGGGGAC---------------------------------------.....................------------------------------------------------------------------------ACATCTCTAGACCCTAATGATTTTGACTTCACTGTAACTGGGAGAGGGAGCCCG
TRN  10010101110011010
NAM  MBD4_HUMAN/76-151
ASQ  ATAGTECRKSVPCGWERVVKQRLFGKTA-................---GRFDVYFIS...........P-QGLKFRSKSSLANYLHKNGE-------------.......------------------------TSLKPEDFDFTVLSKRGI
DSQ  GCTACTGCAGGAACAGAATGCCGTAAGTCTGTCCCATGTGGATGGGAAAGAGTTGTGAAGCAAAGGTTATTTGGGAAGACAGCA---................................................---------GGAAGATTTGATGTGTACTTTATCAGC.................................CCA---CAAGGACTGAAGTTCAGATCCAAAAGTTCACTTGCTAATTATCTTCACAAAAATGGAGAG---------------------------------------.....................------------------------------------------------------------------------ACTTCTCTTAAGCCAGAAGATTTTGATTTTACTGTACTTTCTAAAAGGGGTATC
TRN  10010101100011000
NAM  Q9SNC0_ARATH/25-137
ASQ  KRATPGDDNWLPPDWRTEIRVRTSGTKA-................---GTVDKFYYE...........PITGRKFRSKNEVLYYLEHGT-PKKKSVKTAENGD.......SHSEHSEGRGSARRQTKSNKKVTEPPPKPLNFDFLNVPEKVT
DSQ  AAACGTGCGACGCCAGGGGATGATAATTGGCTTCCTCCTGATTGGAGAACCGAAATTAGGGTTCGAACCTCTGGCACTAAAGCT---................................................---------GGTACTGTTGATAAGTTCTACTACGAA.................................CCGATTACGGGTCGTAAGTTCCGGTCCAAGAACGAGGTTTTGTACTATTTGGAACACGGGACG---CCTAAAAAGAAGTCCGTCAAGACAGCGGAAAACGGAGAC.....................TCACATTCCGAACATTCTGAAGGTAGAGGAAGCGCTAGGCGGCAGACAAAATCCAACAAAAAGGTTACTGAGCCACCGCCAAAGCCGTTGAACTTCGATTTTCTGAATGTGCCGGAGAAGGTTACT
TRN  10010101100011001
NAM  Q9VGA4_DROME/445-519
ASQ  KPTVIVQDWRLPPGWIKHMYQRS------................NVLGKWDVILVS...........P-SGKRFRSKSDLKLFLESQNL-------------.......-----------------------VYNPDVYDFSIHRRRAKDI
DSQ  AAACCCACTGTTATCGTGCAGGATTGGCGTCTGCCTCCTGGCTGGATCAAGCACATGTACCAGCGGTCC------------------................................................AACGTCCTCGGCAAGTGGGATGTTATTCTGGTCTCG.................................CCC---AGCGGCAAACGTTTCCGCTCCAAGTCCGACTTGAAGTTGTTCCTTGAGTCCCAGAATCTG---------------------------------------.....................---------------------------------------------------------------------GTCTACAACCCGGATGTGTACGACTTTAGCATCCATCGACGTCGTGCCAAAGACATC
TRN  11011101101011011
NAM  Q9VHB7_DROME/9-100
ASQ  IERKRVDCSVLPKGWQRDEV-RKSGSSANnnassnnnssatassnNNNNKVDVFYYS...........P-TGKRAEGKPQDIAIPDFQ---------------.......-------------------------PGKMPHCALPSPSISLY
DSQ  ATCGAGCGCAAACGCGTCGACTGCAGTGTCCTGCCAAAGGGATGGCAGCGCGACGAGGTC---CGAAAGTCCGGCAGCAGCGCCAATaacaacgccagcagcaacaacaacagcagtgccacagccagcagcaacAACAACAATAACAAGGTGGATGTTTTCTACTACAGT.................................CCC---ACAGGAAAAAGGGCGGAGGGAAAGCCACAGGACATTGCAATCCCTGATTTCCAG---------------------------------------------.....................---------------------------------------------------------------------------CCTGGCAAAATGCCGCACTGCGCCCTGCCCTCGCCCTCCATTTCGCTGTAC
TRN  10010101100011011
NAM  Q9V424_DROME/9-126
ASQ  IERKRVDCSVLPKGWQRDEV-RKSGSSANnnassnnnssatassnNNNNKVDVFYYSralrtdvslvpP-IRQTASIFKQPVTVIRNHKQ-------------.......------------DPAKAKNEPKHGTREKPKQLFWEKRLERLR
DSQ  ATCGAGCGCAAACGCGTCGACTGCAGTGTCCTGCCAAAGGGATGGCAGCGCGACGAGGTC---CGAAAGTCCGGCAGCAGCGCCAATaacaacgccagcagcaacaacaacagcagtgccacagccagcagcaacAACAACAATAACAAGGTGGATGTTTTCTACTACAGCcgagccctgcgcactgatgtctccctggtgcctCCC---ATTCGACAGACTGCCTCGATCTTCAAGCAACCGGTGACGGTGATTCGCAACCATAAACAG---------------------------------------.....................------------------------------------GATCCCGCCAAAGCGAAGAATGAACCCAAGCATGGCACTCGGGAGAAGCCGAAACAGCTGTTCTGGGAGAAGCGACTGGAACGACTACGC
TRN  11011101101011011
NAM  O49655_ARATH/104-177
ASQ  WVIDKPGLPRTPRGFKRSLILRKD-----................--YSKMDAYYIT...........P-TGKKLKSRNEIAAFIDANQD-------------.......-----------------------YKYALLGDFNFTVPKVMEE
DSQ  TGGGTCATCGACAAGCCTGGCTTGCCGAGGACACCAAGAGGGTTCAAAAGGAGCTTAATTCTGAGAAAGGAT---------------................................................------TACTCGAAAATGGATGCGTACTACATAACT.................................CCT---ACTGGGAAGAAGCTCAAGTCTCGTAATGAAATCGCAGCCTTCATCGATGCCAATCAGGAT---------------------------------------.....................---------------------------------------------------------------------TACAAGTATGCACTGCTTGGAGATTTCAATTTCACAGTCCCAAAGGTGATGGAAGAG
TRN  10010101100011010
NAM  Q9SLR5_WHEAT/1-107
ASQ  ------NPDGLPKGWVKELVFRKCNDG--................---IRKDPYYTD...........PVSHLLFRTLKSVISYLQTGEISRHAYLPRRSVTD.......IYSFDGCADLPRKMLKRLKVPGKKKQKSVQSLVFEKKLPDDQ
DSQ  ------------------AATCCAGACGGGCTACCGAAAGGATGGGTGAAAGAATTGGTATTTAGAAAGTGCAACGATGGA------................................................---------ATTAGAAAAGACCCGTACTATACTGAT.................................CCTGTCAGTCATCTTCTATTCCGAACACTGAAATCTGTAATAAGCTACCTTCAGACGGGAGAAATAAGTAGACATGCCTATCTTCCAAGAAGAAGTGTCACAGAC.....................ATTTACTCTTTCGATGGGTGTGCAGATCTGCCTCGAAAAATGCTGAAGCGATTGAAAGTACCAGGGAAGAAAAAACAAAAATCTGTGCAATCGTTGGTCTTCGAAAAGAAATTACCTGATGACCAG
TRN  10010101100011010
NAM  Q9VCG5_DROME/35-106
ASQ  RKTATSYNGNLAPGWRRLT----------................---NNNEVAYIS...........P-SGKTLRTQFQIKDYLLTQGT-------------.......-------------------CKCGLPCPLRPEYLFDFNAQVPN
DSQ  AGGAAGACGGCCACTAGCTACAATGGAAATTTGGCCCCCGGCTGGCGTCGCTTGACC------------------------------................................................---------AACAACAATGAGGTGGCCTATATCAGC.................................CCC---TCGGGCAAAACGCTGCGCACGCAGTTCCAGATCAAGGACTATCTGCTCACACAGGGTACC---------------------------------------.....................---------------------------------------------------------TGCAAGTGCGGCCTGCCGTGTCCGCTGCGCCCGGAGTATCTATTCGACTTTAATGCACAGGTGCCCAAC
TRN  10010101100011011
NAM  SETB1_HUMAN/594-668
ASQ  YRGKNPLLVPLLYDFRRMTARRRVNRKM-................----GFHVIYKT...........P-CGLCLRTMQEIERYLFETG--------------.......-----------------------CDFLFLEMFCLDPYVLVDR
DSQ  TACCGGGGCAAGAACCCTCTGCTGGTCCCGTTACTATATGACTTCCGGCGGATGACAGCCCGGCGTCGAGTTAACCGCAAGATG---................................................------------GGCTTTCATGTTATCTATAAGACA.................................CCT---TGTGGTCTCTGCCTTCGGACAATGCAGGAGATAGAACGCTACCTTTTCGAGACTGGC------------------------------------------.....................---------------------------------------------------------------------TGTGACTTCCTCTTCCTGGAGATGTTCTGTTTGGATCCATATGTTCTTGTGGACCGA
TRN  10010111100111010
NAM  YNCA_CAEEL/824-900
ASQ  FHRNSPIHTPLLCGWRRIMYTMSTGKKR-................-GAVKKNIIYFS...........P-CGAALHQISDVSEYIHVTRS-------------.......-------------------------LLTIDCFSFDARIDTAT
DSQ  TTCCATCGAAATTCACCAATACATACTCCTCTTTTGTGTGGTTGGAGACGAATTATGTACACAATGAGTACTGGAAAGAAGCGG---................................................---GGAGCAGTGAAGAAAAACATTATTTACTTTTCT.................................CCA---TGCGGAGCCGCTCTTCACCAGATCAGCGACGTCTCTGAATATATTCATGTCACCAGAAGT---------------------------------------.....................---------------------------------------------------------------------------TTATTGACGATTGATTGTTTTTCATTTGATGCACGAATCGATACTGCCACT
TRN  10010101110011000
NAM  Q23590_CAEEL/323-398
ASQ  KTNEAMLRLPLQLGWRRQTCVRSIASAG-................---VKGDVSYFA...........P-CGKKLSTYSEVVRYLTKNS--------------.......-----------------------IHYITRDNFLFNTKLVIGE
NAM  BAZ2A_HUMAN/519-593
ASQ  IATPEEVRLPLQHGWRREVRIKK-GSHRW................----QGETWYYG...........P-CGKRMKQFPEVIKYLSRNL--------------.......-----------------------VHSVRREHFSFSPRMPVGD
DSQ  ATTGCTACCCCAGAAGAAGTTCGTCTTCCCCTCCAACATGGGTGGCGGAGAGAGGTGCGCATCAAGAAG---GGCAGCCACCGATGG................................................------------CAGGGGGAGACCTGGTATTATGGC.................................CCC---TGTGGGAAGAGGATGAAGCAATTTCCAGAAGTGATCAAGTACCTGAGCCGCAACCTG------------------------------------------.....................---------------------------------------------------------------------GTACACAGTGTCCGCCGAGAGCACTTCAGCTTCAGTCCCCGTATGCCTGTTGGAGAT
TRN  10010101100011011
NAM  BAZ2B_HUMAN/543-617
ASQ  VTDERELRIPLEYGWQRETRIRNFGGR--................---LQGEVAYYA...........P-CGKKLRQYPEVIKYLSRNG--------------.......-----------------------IMDISRDNFSFSAKIRVGD
DSQ  GTAACAGATGAACGTGAACTGCGTATTCCATTGGAATATGGCTGGCAGAGAGAGACAAGAATAAGAAACTTTGGAGGGCGC------................................................---------CTTCAAGGAGAAGTAGCATATTATGCT.................................CCA---TGTGGAAAGAAACTTAGGCAGTACCCTGAAGTAATAAAGTATCTCAGCAGAAATGGA------------------------------------------.....................---------------------------------------------------------------------ATAATGGATATCTCAAGGGACAATTTCAGCTTCAGTGCAAAAATAAGAGTGGGTGAC
TRN  10010101100011001
NAM  Q9SGH2_ARATH/258-374
ASQ  RHFISERHGVLEDGWRVEFRQPLNG----................---YQLCAVYCA...........P-NGKTFSSIQEVACYLGLAINGNYSCMDAEIRNEnsllqerLHTPKRRKTSRWPNNGFPEQKGSSVSAQLRRFPFNGQTMSPF
DSQ  AGGCATTTCATATCTGAAAGGCATGGAGTATTGGAAGATGGCTGGCGTGTCGAATTCAGACAACCTTTAAATGGT------------................................................---------TATCAGTTATGTGCAGTGTATTGTGCT.................................CCG---AATGGAAAAACATTTAGTTCAATACAAGAAGTTGCTTGTTATCTGGGCTTGGCAATTAATGGTAACTACAGCTGTATGGATGCTGAAATCAGGAATGAGaattctcttcttcaagaaagaTTGCATACGCCCAAGAGAAGAAAGACATCAAGATGGCCAAACAATGGTTTCCCTGAGCAAAAGGGTAGTTCAGTGAGTGCTCAACTCAGGCGTTTTCCATTCAATGGTCAGACCATGTCTCCTTTC
TRN  10010101100011000
NAM  Q9XI36_ARATH/4-77
ASQ  TDELVSIELPAPASWKKLFYPKRAGTP--................---RKTEIVFVA...........P-TGEEISSRKQLEQYLKAHPG-------------.......-------------------------NPVISEFEWTTGETPRR
DSQ  ACAGACGAGCTTGTCTCCATTGAGCTACCAGCTCCAGCTTCATGGAAGAAACTGTTTTATCCGAAAAGAGCCGGTACTCCG------................................................---------AGAAAGACGGAGATTGTGTTTGTGGCT.................................CCA---ACGGGTGAAGAGATTAGCTCGCGGAAGCAGTTGGAGCAGTACCTGAAGGCCCATCCTGGC---------------------------------------.....................---------------------------------------------------------------------------AATCCTGTCATCTCTGAGTTTGAGTGGACAACTGGGGAAACTCCAAGGAGG
TRN  10010101100011001
//