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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF01388 - ARID)
FAM  PF01388
PID  ARID
DES  ARID/BRIGHT DNA binding domain
IPR  IPR001606
ANO  12
ALN  118
AID  0.26686
APH  ((((Q23541_CAEEL/118-233:1.02621,YP83_CAEEL/21-131:1.39599):0.13560,(YM42_YEAST/182-294:0.98625,(RBBP2_HUMAN/81-189:0.24177,JD1C_HUMAN/76-184:0.30208):0.50301):0.26699):0.23684,(((P91019_CAEEL/296-407:0.89094,SMAF1_HUMAN/631-740:0.69071):0.22215,(ARI3A_MOUSE/240-350:0.00000,DRI_DROME/290-400:0.23962):0.47720):0.30629,RBBP1_HUMAN/306-416:1.04593):0.02371):0.36899,SWI1_YEAST/403-508:0.99437,JMJ_MOUSE/616-726:1.50953);
ATP  ((((Q23541_CAEEL/118-233,YP83_CAEEL/21-131),(YM42_YEAST/182-294,(RBBP2_HUMAN/81-189,JD1C_HUMAN/76-184))),(((P91019_CAEEL/296-407,SMAF1_HUMAN/631-740),(ARI3A_MOUSE/240-350,DRI_DROME/290-400)),RBBP1_HUMAN/306-416)),SWI1_YEAST/403-508,JMJ_MOUSE/616-726);
ATL  11.8642
DNO  10
DLN  354
DID  0.390151
DPH  (YM42_YEAST/182-294:0.62347,((JD1C_HUMAN/76-184:0.30070,RBBP2_HUMAN/81-189:0.28956):0.20875,(RBBP1_HUMAN/306-416:0.57859,((DRI_DROME/290-400:0.23561,ARI3A_MOUSE/240-350:0.10851):0.25886,JMJ_MOUSE/616-726:0.83604):0.11735):0.25743):0.24461,((SWI1_YEAST/403-508:0.66629,YP83_CAEEL/21-131:0.54380):0.12453,Q23541_CAEEL/118-233:0.63699):0.17194);
DTP  (YM42_YEAST/182-294,((JD1C_HUMAN/76-184,RBBP2_HUMAN/81-189),(RBBP1_HUMAN/306-416,((DRI_DROME/290-400,ARI3A_MOUSE/240-350),JMJ_MOUSE/616-726))),((SWI1_YEAST/403-508,YP83_CAEEL/21-131),Q23541_CAEEL/118-233));
DTL  6.20303
RID  0.268634
RPH  ((((Q23541_CAEEL/118-233:1.09783,YP83_CAEEL/21-131:1.38109):0.09767,(YM42_YEAST/182-294:0.98448,(RBBP2_HUMAN/81-189:0.24671,JD1C_HUMAN/76-184:0.29928):0.51232):0.28377):0.28650,((ARI3A_MOUSE/240-350:0.06933,DRI_DROME/290-400:0.17443):0.66886,RBBP1_HUMAN/306-416:0.94836):0.16855):0.30266,SWI1_YEAST/403-508:0.99388,JMJ_MOUSE/616-726:1.50857);
RTP  ((((Q23541_CAEEL/118-233,YP83_CAEEL/21-131),(YM42_YEAST/182-294,(RBBP2_HUMAN/81-189,JD1C_HUMAN/76-184))),((ARI3A_MOUSE/240-350,DRI_DROME/290-400),RBBP1_HUMAN/306-416)),SWI1_YEAST/403-508,JMJ_MOUSE/616-726);
RTL  10.0243
LNK  ARI3A_MOUSE/240-350:Q62431:U60335
LNK  DRI_DROME/290-400:Q24573:AE003461
LNK  JD1C_HUMAN/76-184:P41229:L25270
LNK  JMJ_MOUSE/616-726:Q62315:D31967
LNK  P91019_CAEEL/296-407:P91019:
LNK  Q23541_CAEEL/118-233:Q23541:Z69385
LNK  RBBP1_HUMAN/306-416:P29374:S66427
LNK  RBBP2_HUMAN/81-189:P29375:S66431
LNK  SMAF1_HUMAN/631-740:O14497:
LNK  SWI1_YEAST/403-508:P09547:X12493
LNK  YM42_YEAST/182-294:Q03214:Z49808
LNK  YP83_CAEEL/21-131:Q09441:Z46676
AMK  xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  JMJ_MOUSE/616-726
ASQ  GRRWGPNVQRLACIKKHLRSQGIT.MDELPLIGG.CELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQ-----DRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEVLMEKE
DSQ  GGCCGGCGCTGGGGCCCCAACGTGCAGCGGCTAGCCTGCATAAAGAAGCACCTCAGATCTCAGGGCATCACC...ATGGATGAGCTCCCCCTCATAGGAGGC...TGTGAGCTCGACCTGGCCTGCTTTTTCCGGCTGATTAATGAGATGGGCGGCATGCAGCAAGTGACTGACCTCAAAAAATGGAACAAACTAGCAGACATGCTGCGCATTCCCAAAACTGCCCAG---------------GACCGGCTGGCCAAGCTGCAGGAGGCCTACTGCCAGTACCTGCTTTCCTATGACTCCCTGTCCCCCGAGGAGCACCGACGGCTGGAGAAGGAGGTGCTGATGGAGAAGGAG
TRN  10010101100011011
NAM  YP83_CAEEL/21-131
ASQ  PEKQRKMAEFYNSLRMFYKRRWNA.TLKLPHVQG.VEVNLYRLYDTVMALGGWQKVAASDKWSDIAEMFGCKDDIL-----CGDHAIKIIYMRYLSKFEQVETIGDVDDYVDNEMSRS
DSQ  CCTGAGAAGCAGAGAAAGATGGCAGAATTTTATAATAGTTTGCGAATGTTCTACAAAAGAAGGTGGAATGCA...ACACTAAAGCTTCCACATGTTCAAGGA...GTTGAAGTGAATCTCTATCGGCTATATGACACTGTTATGGCATTGGGTGGATGGCAGAAAGTAGCTGCAAGCGACAAATGGTCTGATATCGCTGAAATGTTCGGATGCAAAGATGATATTCTG---------------TGTGGAGATCATGCGATCAAAATAATCTATATGAGGTATTTATCGAAATTCGAACAAGTAGAAACTATCGGAGATGTTGATGATTATGTGGACAATGAAATGTCAAGAAGT
TRN  10010101100011000
NAM  P91019_CAEEL/296-407
ASQ  MKVMAERRGFFERLIEFCEHNGEP.LTMVPQVSK.QSIDLHRLYIGVRAKGGFQQVTKDKYWKNLCTEANPDLAES----SAAGYQLRKHYQRHLLMLECRETGRNPEDEVAFADKMK
NAM  ARI3A_MOUSE/240-350
ASQ  LDADPKRKEFLDDLFSFMQKRGTP.VNRIPIMAK.QVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSIT-----SAAFTLRTQYMKYLYPYECERRGLSSPNELQAAIDSN
DSQ  CTGGATGCGGACCCCAAGAGGAAAGAGTTCCTGGATGACCTTTTCAGCTTCATGCAGAAGCGGGGCACTCCA...GTGAACCGGATCCCCATCATGGCGAAG...CAGGTCCTCGACCTGTTCATGTTGTATGTGCTGGTGACCGAGAAGGGCGGCCTGGTAGAGGTTATCAACAAGAAACTGTGGAGGGAGATCACCAAGGGGCTCAACCTGCCTACCTCCATCACC---------------AGTGCTGCCTTCACACTTCGGACACAGTACATGAAGTATCTTTACCCCTATGAGTGTGAGAGGCGAGGCCTGAGCAGCCCCAACGAGCTCCAGGCCGCCATAGACAGCAAT
TRN  10010101100011011
NAM  DRI_DROME/290-400
ASQ  INDDPKRKEFLDDLFSFMQKRGTP.INRLPIMAK.SVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSIT-----SAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGN
DSQ  ATCAATGATGATCCCAAGCGCAAAGAGTTCCTGGACGACTTGTTCTCGTTTATGCAAAAGCGCGGAACTCCG...ATCAATCGGCTGCCGATCATGGCCAAA...TCGGTGCTGGATCTCTACGAGCTGTACAATCTGGTGATAGCCCGCGGCGGCTTGGTGGATGTTATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGCTGCACCTGCCCTCCAGCATCACC---------------AGTGCCGCGTTCACCCTGCGCACCCAATACATGAAGTATCTGTACCCGTACGAGTGCGAGAAAAAGAATCTGAGCACGCCGGCGGAGCTGCAGGCGGCCATCGATGGGAAT
TRN  10010101100011011
NAM  SMAF1_HUMAN/631-740
ASQ  LGGEPERKMWVDRYLAFTEEKAMG.MTNLPAVGR.KPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTS------SSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADS
NAM  RBBP1_HUMAN/306-416
ASQ  ELDPEERDNFLQQLYKFMEDRGTP.INKPPVLGY.KDLNLFKLFRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNS-----AASYNLKTAYRKYLYGFEEYCRSANIQFRTVHHHEPK
DSQ  GAACTTGATCCTGAAGAGAGGGACAACTTCCTCCAGCAGCTTTATAAGTTTATGGAAGACAGAGGTACTCCA...ATCAACAAACCACCTGTTTTGGGCTAT...AAAGATCTCAATCTCTTCAAACTCTTCAGACTGGTTTATCATCAGGGTGGATGTGACAATATTGATAGTGGTGCTGTATGGAAGCAAATTTATATGGACCTTGGCATTCCTATTTTGAATTCA---------------GCTGCTTCCTACAATCTAAAAACTGCTTATAGAAAGTATCTCTATGGTTTTGAGGAGTACTGCCGTTCGGCAAATATTCAGTTCAGAACTGTTCATCACCATGAACCAAAA
TRN  10010101100011001
NAM  Q23541_CAEEL/118-233
ASQ  EAIVKEKHTFIDRLINFNRYSGL-.TFEFPVDRDgNIVDLYRLHRIVQNFGGCEEVNEDEKWRDVAREYLPKEQMARGVPSAFINLIRSHYNLHIEPFNRNLKEKAMKNDDESDDEME
DSQ  GAGGCAATTGTCAAAGAGAAACACACATTTATTGACCGATTAATCAATTTCAATCGATATTCTGGTCTA---...ACTTTTGAGTTTCCAGTGGATCGAGATggaAATATTGTCGATTTGTATCGATTACATCGTATAGTTCAAAACTTTGGAGGATGTGAAGAAGTGAATGAAGATGAAAAATGGAGAGACGTTGCCCGCGAATACCTTCCAAAGGAGCAAATGGCTCGCGGTGTTCCGTCGGCTTTCATAAATTTGATTCGATCACATTATAATTTGCACATTGAACCATTTAATCGAAATTTGAAAGAAAAAGCGATGAAAAATGATGATGAAAGTGATGATGAAATGGAA
TRN  10010101110011000
NAM  YM42_YEAST/182-294
ASQ  EFQRTKIVDFYAKLYNFHNKIKKStLTRIPSIDK.RTLDLYRLRSCVKLRGGFNAVCEKKLWAQIGRELGYSGRIM----SSLSTSLRSAYAKILLDFDIYEEEEQAARNNEKNEDMV
DSQ  GAATTTCAAAGAACCAAGATAGTTGATTTTTATGCGAAGTTGTATAATTTTCACAATAAAATCAAAAAGAGTactCTCACAAGGATCCCAAGTATCGATAAA...CGCACCTTGGATTTATATAGACTGAGGAGTTGTGTGAAGTTGAGGGGAGGCTTCAATGCTGTTTGCGAAAAAAAATTATGGGCGCAAATTGGAAGAGAATTAGGTTACTCGGGCAGGATTATG------------AGTTCGTTATCAACTTCTTTAAGATCTGCCTATGCAAAAATTTTATTAGACTTTGACATATATGAAGAAGAAGAGCAAGCTGCTCGTAATAACGAAAAAAATGAAGACATGGTG
TRN  10010101100011000
NAM  RBBP2_HUMAN/81-189
ASQ  EAMTRVRLDFLDQLAKFWELQGS-.TLKIPVVER.KILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGK------GTGSLLKSHYERILYPYELFQSGVSLMGVQMPNLDLK
DSQ  GAGGCAATGACCAGAGTGAGATTGGATTTCTTGGATCAACTAGCAAAATTTTGGGAACTTCAAGGATCT---...ACTCTGAAGATCCCTGTGGTAGAGAGA...AAAATCCTGGATCTGTATGCTTTGAGCAAGATTGTTGCCAGCAAAGGAGGTTTTGAAATGGTCACCAAAGAGAAGAAATGGTCTAAAGTGGGTAGTCGCTTGGGATATCTGCCAGGAAAA------------------GGAACTGGGTCTCTTTTGAAGTCACATTATGAAAGAATTCTCTACCCATATGAGCTTTTCCAGTCTGGTGTGAGCCTTATGGGTGTGCAGATGCCTAATTTAGATCTTAAA
TRN  10010101100011000
NAM  JD1C_HUMAN/76-184
ASQ  EAQTRVKLNYLDQIAKFWEIQGS-.SLKIPNVER.RILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGK------NIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPFDNE
DSQ  GAGGCCCAGACGAGAGTGAAACTGAACTACTTGGACCAGATTGCCAAATTCTGGGAAATCCAGGGCTCC---...TCCTTAAAGATTCCCAATGTAGAACGG...CGGATCTTGGACCTCTACAGTCTCAGCAAAATTGTGGTGGAGGAAGGTGGTTATGAAGCTATCTGCAAGGACCGTCGGTGGGCTCGGGTAGCCCAGCGCCTCAACTATCCACCAGGCAAA------------------AATATTGGCTCCTTGCTACGCTCCCACTACGAACGCATTGTTTATCCCTATGAAATGTACCAGTCTGGAGCCAACCTTGTGCAGTGTAACACACGTCCATTTGATAATGAG
TRN  10010101100011010
NAM  SWI1_YEAST/403-508
ASQ  ELNNKQYELFMKSLIENCKKRNMP.LQSIPEIGN.RKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDY----------QQLESIYFRILLPYERHMISQEGIKETQAKRIFL
DSQ  GAATTGAATAACAAACAATATGAACTTTTTATGAAATCTTTGATTGAAAACTGTAAAAAAAGAAATATGCCG...TTACAATCAATACCAGAAATCGGCAAC...AGAAAAATAAATCTTTTTTATCTTTATATGTTGGTTCAAAAATTCGGTGGTGCAGATCAAGTAACAAGGACCCAACAGTGGTCTATGGTGGCCCAAAGGCTGCAAATTTCCGATTAC------------------------------CAACAATTAGAATCAATCTATTTTAGAATTTTATTACCTTACGAAAGACACATGATTTCCCAAGAAGGTATAAAGGAAACTCAAGCGAAAAGAATATTCTTG
TRN  10010101100011000
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