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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF01111 - CKS)
FAM  PF01111
PID  CKS
DES  Cyclin-dependent kinase regulatory subunit
IPR  IPR000789
ANO  7
ALN  82
AID  0.64205
APH  (((((CKS1_DROME/1-73:0.19282,CKS1_LEIME/27-99:0.22518):0.09236,CKS1_MOUSE/2-74:0.08072):0.08991,CKS1_CAEEL/4-76:0.29566):0.12575,CKS1_SCHPO/20-101:0.54968):0.06938,CKS1_PHYPO/2-72:0.10654,O23249_ARATH/2-72:0.16574);
ATP  (((((CKS1_DROME/1-73,CKS1_LEIME/27-99),CKS1_MOUSE/2-74),CKS1_CAEEL/4-76),CKS1_SCHPO/20-101),CKS1_PHYPO/2-72,O23249_ARATH/2-72);
ATL  1.98866
DNO  6
DLN  246
DID  0.593539
DPH  ((O23249_ARATH/2-72:0.28990,CKS1_SCHPO/20-101:0.47792):0.11354,((CKS1_DROME/1-73:0.19425,CKS1_LEIME/27-99:0.27658):0.11713,CKS1_CAEEL/4-76:0.24414):0.05836,CKS1_MOUSE/2-74:0.15524);
DTP  ((O23249_ARATH/2-72,CKS1_SCHPO/20-101),((CKS1_DROME/1-73,CKS1_LEIME/27-99),CKS1_CAEEL/4-76),CKS1_MOUSE/2-74);
DTL  1.92706
RID  0.630457
RPH  (((O23249_ARATH/2-72:0.20545,CKS1_SCHPO/20-101:0.58566):0.10405,CKS1_CAEEL/4-76:0.28071):0.10119,(CKS1_DROME/1-73:0.18265,CKS1_LEIME/27-99:0.23574):0.10349,CKS1_MOUSE/2-74:0.07584);
RTP  (((O23249_ARATH/2-72,CKS1_SCHPO/20-101),CKS1_CAEEL/4-76),(CKS1_DROME/1-73,CKS1_LEIME/27-99),CKS1_MOUSE/2-74);
RTL  1.87478
LNK  CKS1_CAEEL/4-76:Q17868:AF016224
LNK  CKS1_DROME/1-73:Q24152:U40077
LNK  CKS1_LEIME/27-99:Q25330:Z49881
LNK  CKS1_MOUSE/2-74:P61025:AB025409
LNK  CKS1_PHYPO/2-72:P55933:
LNK  CKS1_SCHPO/20-101:P08463:M16032
LNK  O23249_ARATH/2-72:O23249:AJ000016
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  CKS1_SCHPO/20-101
ASQ  FIDQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDyfnpetgtlRILQEEEWRGLGITQSLGWEMYEVHVPEPHILLFKREKD
DSQ  TTCATTGATCAAATCCATTATTCTCCTAGATATGCTGATGATGAATATGAATATCGACATGTTATGTTACCAAAAGCAATGCTAAAAGCGATACCCACCGATtatttcaatccagagactggaacgcttCGAATCCTTCAAGAAGAAGAATGGAGAGGACTTGGAATTACTCAAAGTCTGGGATGGGAAATGTATGAAGTCCATGTCCCAGAGCCACACATCCTGCTATTTAAGCGTGAAAAAGAT
TRN  10010101100011010
NAM  CKS1_CAEEL/4-76
ASQ  GNNDFYYSNKYEDDEFEYRHVHVTKDVSKLIPKN.........RLMSETEWRSLGIQQSPGWMHYMIHGPERHVLLFRRPLA
DSQ  GGAAACAATGATTTCTACTATTCAAACAAATACGAAGATGATGAGTTCGAGTACCGTCACGTTCATGTCACCAAGGATGTTTCCAAGCTTATCCCAAAAAAT...........................CGATTGATGTCCGAAACAGAGTGGAGAAGTCTTGGAATTCAACAGTCCCCAGGATGGATGCACTACATGATTCACGGACCCGAGCGTCACGTGCTTCTTTTCCGCAGACCATTGGCA
TRN  10010101110011001
NAM  O23249_ARATH/2-72
ASQ  G--QIQYSEKYFDDTFEYRHVVLPPEVAKLLPKN.........RLLSENEWRAIGVQQSRGWVHYAVHRPEPHIMLFRRPLN
DSQ  GGT------CAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACAGGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAAT...........................CGTCTTCTCTCCGAAAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTACGCGGTTCATCGACCTGAGCCGCACATAATGCTATTCAGGAGGCCTCTTAAC
TRN  10010101110011011
NAM  CKS1_PHYPO/2-72
ASQ  PRDTIQYSEKYYDDKFEYRHVILPPDVAKEIPKN.........RLLSEGEWRGLGVQQSQGWVHYALHRPEPHILLFRR--E
NAM  CKS1_LEIME/27-99
ASQ  LQCKILYSDKYYDDMFEYRHVILPKDLARLVPTS.........RLMSEMEWRQLGVQQSQGWVHYMIHKPEPHVLLFKRPRT
DSQ  CTGCAGTGCAAGATTTTGTACAGTGACAAGTACTACGATGATATGTTTGAGTACCGTCACGTGATTCTCCCGAAGGATCTTGCCCGCCTCGTCCCCACCAGC...........................CGTCTCATGAGCGAGATGGAGTGGCGCCAGCTCGGCGTGCAGCAGTCGCAAGGGTGGGTGCACTACATGATTCACAAGCCAGAACCTCACGTGCTGCTCTTCAAGCGTCCTCGCACG
TRN  11011111101111111
NAM  CKS1_DROME/1-73
ASQ  MSKDIYYSDKYYDEQFEYRHVVLPKELVKMVPKT.........HLMTEAEWRSIGVQQSRGWIHYMIHKPEPHILLFRRPKT
DSQ  ATGAGCAAGGACATTTACTACTCCGACAAGTACTACGATGAGCAGTTCGAGTACAGACATGTGGTTTTGCCAAAGGAGCTGGTAAAAATGGTGCCCAAGACT...........................CATCTGATGACGGAGGCCGAGTGGCGATCAATTGGCGTACAGCAGTCGCGCGGATGGATCCACTACATGATCCATAAGCCGGAGCCCCACATCCTCCTGTTTCGGCGACCCAAAACG
TRN  10010101100011001
NAM  CKS1_MOUSE/2-74
ASQ  SHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKT.........HLMSESEWRNLGVQQSQGWVHYMIHEPEPHILLFRRPLP
DSQ  TCCCACAAACAAATCTACTATTCGGACAAATACGACGACGAGGAGTTCGAATACCGGCATGTCATGTTGCCCAAGGACATAGCCAAGCTGGTCCCGAAAACC...........................CATCTGATGTCTGAATCTGAATGGAGGAACCTCGGCGTTCAGCAGAGTCAGGGATGGGTCCACTATATGATCCATGAACCAGAACCTCACATCTTACTGTTCCGACGGCCACTGCCC
TRN  10010101100011010
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