EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF00980 - Rota_Capsid_VP6)
FAM  PF00980
PID  Rota_Capsid_VP6
DES  Rotavirus major capsid protein VP6
IPR  IPR001385
ANO  3
ALN  396
AID  0.531829
APH  (VS06_ROTBS/1-395:0.89507,P87723_9REOV/1-396:0.16840,O39646_9REOV/1-396:0.16139);
ATP  (VS06_ROTBS/1-395,P87723_9REOV/1-396,O39646_9REOV/1-396);
ATL  1.22486
DNO  3
DLN  1188
DID  0.577754
DPH  (VS06_ROTBS/1-395:0.60334,P87723_9REOV/1-396:0.18757,O39646_9REOV/1-396:0.20618);
DTP  (VS06_ROTBS/1-395,P87723_9REOV/1-396,O39646_9REOV/1-396);
DTL  0.99709
RID  0.531829
RPH  (VS06_ROTBS/1-395:0.89507,P87723_9REOV/1-396:0.16840,O39646_9REOV/1-396:0.16139);
RTP  (VS06_ROTBS/1-395,P87723_9REOV/1-396,O39646_9REOV/1-396);
RTL  1.22486
LNK  O39646_9REOV/1-396:O39646:D38099
LNK  P87723_9REOV/1-396:P87723:U85998
LNK  VS06_ROTBS/1-395:Q00734:M88768
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  VS06_ROTBS/1-395
ASQ  MDVLFSIAKTVSELKKRVVVGTIYTNVEDIIQQTNELIRTLNGSTFHTGGIGTQPQKDWVVQLPQLGTTLLNLDDNYVQSARGIIDYLASFIEAVCDDEMVREASRNGMQPQSPTLIALASSKFKTINFNNSSQSIKNWSAQSRRENPVYEYKNPMVFEYRNSYILHRADQQFGNAMGLRYYTTSNTCQIAAFDSTMAENAPNNTQRFIYHGRLKRPISNVLMKVERGAPNVNNPTILPDPTNQTTWLFNPVQVMNGTFTIEFYNNGQLVDMVRN-MGIATVRTFDSYRITIDMIRPAAMTQYVQQLFPVGGPYSHQAAYMLTLSVLDATTESVLCDSHSVDYSIVANTRRDSAMPAGTVFQPGFPWEQTLSNYTVAQEDNLERLLLVASVKRMVM
DSQ  ATGGATGTGCTGTTCTCCATTGCGAAAACAGTTTCAGAGCTTAAAAAGAGAGTGGTAGTTGGAACAATTTACACTAATGTTGAAGACATAATTCAACAGACTAATGAGTTGATTAGAACTTTGAATGGAAGTACGTTCCATACTGGTGGCATTGGCACGCAACCTCAGAAAGACTGGGTTGTTCAACTTCCTCAACTAGGCACGACTCTACTTAATCTCGATGATAATTATGTGCAATCTGCAAGAGGTATAATTGATTATCTGGCCTCATTTATTGAAGCTGTATGTGATGATGAAATGGTTAGAGAAGCGTCAAGAAATGGAATGCAACCTCAATCACCAACATTAATCGCATTAGCTTCATCAAAATTCAAAACTATTAATTTCAATAATAGTTCTCAGTCTATCAAAAATTGGAGCGCTCAATCTAGACGTGAAAATCCAGTTTATGAATATAAGAATCCAATGGTTTTTGAATATAGAAATTCATATATTCTGCATCGCGCAGATCAACAGTTTGGAAATGCTATGGGATTGAGATATTATACAACAAGTAATACTTGTCAAATTGCAGCATTTGATTCTACTATGGCTGAGAATGCACCAAATAATACACAAAGGTTCATTTATCATGGAAGATTGAAGAGACCAATCTCTAATGTGCTAATGAAAGTTGAACGTGGCGCTCCAAATGTTAATAACCCAACAATACTACCAGATCCAACTAACCAAACTACGTGGTTGTTTAATCCAGTACAAGTGATGAACGGAACATTTACAATTGAGTTTTATAACAATGGCCAGTTAGTTGATATGGTTAGAAAT---ATGGGAATAGCAACTGTCAGAACTTTTGATTCATATAGGATTACGATAGATATGATTAGACCAGCTGCTATGACCCAGTATGTACAGCAATTGTTCCCTGTTGGTGGACCATACTCTCATCAAGCTGCTTATATGCTTACACTTAGTGTGCTGGATGCCACGACAGAATCTGTTTTGTGCGACTCTCATTCAGTCGATTATTCGATAGTTGCCAATACGAGAAGGGATTCAGCGATGCCAGCTGGAACGGTTTTCCAACCAGGATTTCCATGGGAACAGACGTTGTCCAACTACACGGTTGCTCAAGAGGATAATTTGGAAAGATTGTTGCTAGTTGCATCCGTGAAGAGAATGGTGATG
TRN  10010101100011000
NAM  P87723_9REOV/1-396
ASQ  MEVLYSLSKTLKDARDKIVEGTLYSNVSDLIQQFNQMIVTMNGNDFQTGGIGNLPIRNWTFDFGLLGTTLLNLDANYVENARTTIEYFIDFIDNVCIDEMSRESQRNGVAPQSEALRKLAGIKFKRINFNNSSEYIENWNLQNRRQRTGFVFHKPNIFPYSASFTLNRSQPMHDNLMGTMWLNAGSEIQVAGFDYSCAINAPANIQQFEHIVQLRRALTTATITLLPDAERFSFPRVINSADGATTWLFNPVILRPNNVEVEFLLNGQIINTYQARFGTIIARNFDTIRLSFQLMRPPNMTPAVNALFPQAQPFQHHATVGLTLRIESAVCESVLADANETLLANVTAVRQEYAIPVGPVFPPGMNWTELITNYSPSREDNLQRVFTVASIRSMLI
DSQ  ATGGAGGTTTTATATTCATTGTCAAAAACTCTTAAAGATGCTAGGGACAAAATTGTTGAAGGTACATTATATTCTAATGTCAGCGATCTTATTCAACAATTTAATCAAATGATAGTAACTATGAACGGAAATGACTTTCAAACTGGAGGAATTGGTAATTTACCTATTAGGAATTGGACTTTCGATTTTGGTCTATTAGGTACAACACTTTTAAATTTGGATGCTAATTACGTTGAGAATGCTAGAACTACAATTGAATATTTTATTGATTTTATTGATAATGTATGTATAGATGAAATGTCAAGAGAGTCTCAAAGAAATGGAGTAGCTCCACAATCTGAAGCGTTAAGAAAATTAGCAGGCATTAAATTCAAGAGAATAAATTTTAACAACTCATCTGAGTATATAGAAAACTGGAATTTACAAAATAGAAGACAACGTACCGGATTTGTTTTTCATAAACCTAATATATTTCCATACTCGGCTTCATTTACTTTAAATAGATCTCAACCAATGCATGATAATTTAATGGGAACTATGTGGCTTAATGCTGGATCAGAAATTCAAGTAGCTGGATTTGATTATTCATGCGCTATAAATGCACCAGCGAACATACAGCAATTTGAGCACATTGTCCAGCTTAGACGTGCGCTAACTACAGCTACTATAACTTTATTACCTGATGCAGAAAGATTCAGTTTTCCAAGAGTTATTAATTCAGCTGATGGTGCAACTACATGGCTCTTCAATCCAGTCATTTTAAGACCAAATAATGTTGAAGTAGAATTTTTGTTAAATGGGCAAATCATTAATACATATCAAGCTAGATTTGGCACTATTATTGCAAGAAATTTTGATACAATTCGGTTGTCATTCCAGTTAATGCGCCCGCCAAATATGACACCAGCTGTTAATGCACTATTTCCGCAAGCACAACCTTTTCAACACCATGCAACAGTTGGACTTACACTACGTATTGAATCTGCAGTTTGTGAATCAGTGCTTGCGGATGCTAATGAGACTCTGTTGGCGAATGTGACAGCAGTACGTCAAGAGTATGCTATTCCAGTTGGACCCGTATTTCCGCCAGGCATGAATTGGACTGAATTGATTACTAACTATTCACCATCTAGAGAAGACAATTTACAGCGTGTATTTACAGTAGCTTCCATTCGAAGCATGTTGATT
TRN  10010101100011000
NAM  O39646_9REOV/1-396
ASQ  MDVLYSLAKTLKDARARIIEGTLYTNVADIVQQVNQVINSLNGSTFQTGGIGNLPVRNWAFDFGTLGTTLLNLDANYVENARTTIDYFIDFVDSVCVDEIVRESQRNGIAPQSDSLRQLSNAKYKRINYDNESEYIENWNLQNRRQRTGYLLHKPNILPYNNSFTLIRSQPAHDNVCGTIWLNNGSEIEIAGFDSECALNAPGNIQEFEHVVPMRRVLNNATVSLLPYAPRLTQRAVIPTADGLNTWLFNPIILRPNNVQVEFLLNGQVITNYQARYGTLAARNFDSIRISFQLVRPPNMTPGVAALLPQAAPFPNHATVGLTLRIESASCESVLSDANEPYLSIVTGLRQEYAIPVGPVFPSGMNWTELLNNYSASREDNLQRIFTAASIRSMII
DSQ  ATGGATGTGCTTTATTCACTTGCCAAGACGCTGAAGGATGCTAGAGCCAGAATAATTGAAGGCACACTTTACACCAACGTAGCTGATATTGTACAACAAGTAAACCAAGTAATCAATTCACTTAATGGCTCAACTTTCCAGACTGGAGGAATCGGCAACTTGCCAGTTAGGAATTGGGCATTTGACTTTGGAACACTCGGAACGACCTTACTCAACTTGGACGCGAATTACGTCGAGAATGCAAGAACAACAATTGACTATTTCATCGATTTTGTTGACTCTGTTTGTGTTGATGAAATAGTGCGTGAATCTCAACGTAATGGAATAGCACCACAATCTGACTCACTGAGACAGCTTTCGAACGCTAAGTACAAAAGAATAAACTATGATAATGAATCAGAATACATAGAGAATTGGAATTTACAGAATAGAAGGCAGCGAACCGGCTATTTATTGCACAAACCAAACATTCTTCCATACAATAATTCATTTACTCTAATTAGATCTCAACCTGCGCATGATAATGTATGTGGAACAATTTGGTTGAATAATGGATCTGAAATTGAAATCGCTGGATTTGATTCTGAATGCGCACTGAATGCTCCGGGAAACATTCAAGAATTTGAACATGTTGTACCAATGCGAAGAGTGTTAAACAATGCTACAGTATCACTTTTACCATATGCACCAAGATTGACGCAGCGAGCAGTCATACCAACAGCTGATGGCTTGAATACGTGGCTTTTTAACCCAATTATATTGAGACCAAACAACGTACAAGTGGAATTTCTGTTGAATGGACAAGTAATAACAAACTACCAAGCCAGATACGGTACATTAGCTGCACGCAATTTCGACTCAATACGTATATCATTCCAACTTGTTAGACCGCCGAATATGACACCTGGAGTAGCAGCACTTCTTCCTCAGGCAGCACCATTTCCAAATCATGCGACAGTCGGTTTAACGTTGAGAATCGAATCTGCTTCTTGTGAATCAGTTTTATCAGACGCAAACGAACCGTACTTGTCAATTGTGACAGGTTTGAGGCAGGAATATGCGATTCCAGTAGGACCAGTATTTCCTAGCGGTATGAACTGGACTGAGTTGCTTAATAATTATTCAGCATCCAGAGAAGATAACTTGCAACGTATATTTACAGCAGCATCCATTCGGAGCATGATTATT
TRN  10010101100011000
//