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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF00545 - Ribonuclease)
FAM  PF00545
PID  Ribonuclease
DES  ribonuclease
IPR  IPR000026
ANO  20
ALN  115
AID  0.377641
APH  ((((((((((RNC2_ASPCL/5-100:0.27419,RNT1_ASPOR/31-126:0.10670):0.07214,(RNMS_ASPSA/6-99:0.24887,(RNPB_PENBR/5-98:0.06054,RNPC_PENCH/5-98:0.09661):0.11098):0.06502):0.06063,RNN1_NEUCR/54-149:0.24781):0.10232,RNT1_TRIHA/4-100:0.26554):0.12993,(RNF1_GIBFU/30-124:0.00000,(RNF1_GIBBA/4-98:0.00000,RNF2_GIBBA/5-99:0.10905):0.12069):0.05972):0.28723,RNU1_USTSP/7-100:0.20346):0.48036,RNU2_USTSP/8-109:0.40340):1.58611,((RNBR_BACAM/58-157:0.03166,RN_BACCI/11-110:0.00000):0.18532,(RN_BACCO/10-109:0.01060,(RN_BACPU/63-162:0.00000,RN_BACIN/63-162:0.00000):0.00000):0.00000):1.09326):0.47030,RNST_SACER/9-99:0.38242):0.26591,RNSA_STRAU/2-93:0.20484,RNS3_STRAU/49-138:0.17621);
ATP  ((((((((((RNC2_ASPCL/5-100,RNT1_ASPOR/31-126),(RNMS_ASPSA/6-99,(RNPB_PENBR/5-98,RNPC_PENCH/5-98))),RNN1_NEUCR/54-149),RNT1_TRIHA/4-100),(RNF1_GIBFU/30-124,(RNF1_GIBBA/4-98,RNF2_GIBBA/5-99))),RNU1_USTSP/7-100),RNU2_USTSP/8-109),((RNBR_BACAM/58-157,RN_BACCI/11-110),(RN_BACCO/10-109,(RN_BACPU/63-162,RN_BACIN/63-162)))),RNST_SACER/9-99),RNSA_STRAU/2-93,RNS3_STRAU/49-138);
ATL  8.09513
DNO  7
DLN  345
DID  0.500399
DPH  ((((RNT1_ASPOR/31-126:0.16897,RNF1_GIBFU/30-124:0.23881):0.25850,RNN1_NEUCR/54-149:0.03743):1.63337,RN_BACIN/63-162:0.00000):0.01620,RN_BACPU/63-162:0.01931,(RNBR_BACAM/58-157:0.02067,RN_BACCI/11-110:0.05625):0.33033);
DTP  ((((RNT1_ASPOR/31-126,RNF1_GIBFU/30-124),RNN1_NEUCR/54-149),RN_BACIN/63-162),RN_BACPU/63-162,(RNBR_BACAM/58-157,RN_BACCI/11-110));
DTL  2.77984
RID  0.433695
RPH  ((RN_BACPU/63-162:0.00000,RN_BACIN/63-162:0.00000):0.06896,(RNBR_BACAM/58-157:0.03199,RN_BACCI/11-110:0.00000):0.11863,(RNN1_NEUCR/54-149:0.00000,(RNT1_ASPOR/31-126:0.17449,RNF1_GIBFU/30-124:0.29490):0.27482):3.27804);
RTP  ((RN_BACPU/63-162,RN_BACIN/63-162),(RNBR_BACAM/58-157,RN_BACCI/11-110),(RNN1_NEUCR/54-149,(RNT1_ASPOR/31-126,RNF1_GIBFU/30-124)));
RTL  4.24183
LNK  RN_BACCI/11-110:P35078:Z29626
LNK  RN_BACCO/10-109:P37203:
LNK  RN_BACIN/63-162:P00649:X53697
LNK  RN_BACPU/63-162:P48068:U06867
LNK  RNBR_BACAM/58-157:P00648:M14442
LNK  RNC2_ASPCL/5-100:P00652:
LNK  RNF1_GIBBA/4-98:P16411:
LNK  RNF1_GIBFU/30-124:P10282:AB006460
LNK  RNF2_GIBBA/5-99:P16412:
LNK  RNMS_ASPSA/6-99:P00653:
LNK  RNN1_NEUCR/54-149:P09646:AL670006
LNK  RNPB_PENBR/5-98:P07446:
LNK  RNPC_PENCH/5-98:P09647:
LNK  RNS3_STRAU/49-138:P30289:
LNK  RNSA_STRAU/2-93:P05798:
LNK  RNST_SACER/9-99:P00650:
LNK  RNT1_ASPOR/31-126:P00651:D28341
LNK  RNT1_TRIHA/4-100:P26875:
LNK  RNU1_USTSP/7-100:P07736:
LNK  RNU2_USTSP/8-109:P00654:
AMK  xxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx..xxxxxxx.xxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  RN_BACIN/63-162
ASQ  ADYLIRYKRLPDNyitKSQASALGWVASKGNLAeVAPGKSIGGDVFSNR..EGRLPSA.SGRTWREADINYVS......--G---FRNADRLVYSSD-WLIYKTTDHYATFTRIR
DSQ  GCAGATTATTTAATTCGCTACAAACGATTGCCTGATAACtacatcacaAAATCACAAGCAAGTGCTCTTGGATGGGTGGCATCAAAGGGAAATCTAGCAgagGTTGCCCCAGGTAAAAGCATCGGTGGAGATGTTTTCTCTAACCGG......GAGGGACGTCTTCCTTCAGCA...AGCGGCCGAACATGGCGTGAGGCAGATATCAACTACGTCTCT..................------GGC---------TTCCGAAATGCTGACCGCCTCGTGTATTCAAGTGAC---TGGCTCATTTACAAAACAACAGACCATTATGCAACTTTCACACGTATTCGA
TRN  11011101111011000
NAM  RN_BACPU/63-162
ASQ  ADYLIRYKRLPDNyitKSQASALGWVASKGNLAeVAPGKSIGGDVFSNR..EGRLPSA.SGRTWREADINYVS......--G---FRNADRLVYSSD-WLIYKTTDHYATFTRIR
DSQ  GCAGATTATTTAATTCGCTACAAACGACTGCCTGATAACtacatcacaAAATCACAAGCAAGTGCTCTTGGATGGGTGGCATCGAAGGGAAATCTAGCAgagGTTGCCCCAGGCAAAAGCATCGGTGGAGATGTTTTCTCTAACCGG......GAGGGACGTCTTCCTTCAGCA...AGCGGCCGCACATGGCGTGAAGCAGATATCAACTACGTCTCA..................------GGC---------TTCCGCAATGCTGACCGCCTCGTGTATTCAAGTGAC---TGGCTCATTTATAAAACAACAGACCATTATGCGACATTCACACGTATTCGA
TRN  11011101101011000
NAM  RN_BACCO/10-109
ASQ  ADYLIRYKRLPDNyitKSQASALGWVASKGNLAeVAPGKSIGGDVFSNR..EGRLPSA.SGRTWREADINYVS......--G---FRNADRLVYSSD-WLIYKTTDHYATFARIR
NAM  RN_BACCI/11-110
ASQ  ADYLLTYHKLPDNyitKSEAQALGWVASKGNLAdVAPGKSIGGDIFSNR..EGKLPAK.SGRTWREADINYTS......--G---FRNSDRILYSSD-WLIYKTTDHYKTFTKIR
DSQ  GCGGATTATCTTCTGACATATCACAAACTTCCTGATAATtacattacaAAATCAGAGGCACAGGCCCTCGGCTGGGTAGCATCAAAAGGGAACCTTGCAgacGTCGCTCCGGGGAAAAGCATCGGCGGAGACATCTTCTCAAACAGG......GAAGGCAAACTCCCGGCCAAA...AGCGGGCGGACGTGGCGTGAAGCTGATATTAACTATACATCA..................------GGC---------TCCAGAAATTCAGACCGGATTCTTTACTCAAGCGAC---TGGCTGATTTATAAGACAACACATCATTATAAAACCTTTACGAAAATCAGA
TRN  10010101100011001
NAM  RNBR_BACAM/58-157
ASQ  ADYLQTYHKLPDNyitKSEAQALGWVASKGNLAdVAPGKSIGGDIFSNR..EGKLPGK.SGRTWREADINYTS......--G---FRNSDRILYSSD-WLIYKTTDHYQTFTKIR
DSQ  GCGGATTATCTTCAGACATATCATAAGCTACCTGATAATtacattacaAAATCAGAAGCACAAGCCCTCGGCTGGGTGGCATCAAAAGGGAACCTTGCAgacGTCGCTCCGGGGAAAAGCATCGGCGGAGACATCTTCTCAAACAGG......GAAGGCAAACTCCCGGGCAAA...AGCGGACGAACATGGCGTGAAGCGGATATTAACTATACATCA..................------GGC---------TTCAGAAATTCAGACCGGATTCTTTACTCAAGCGAC---TGGCTGATTTACAAAACAACGGACCATTATCAGACCTTTACAAAAATCAGA
TRN  10010101100011001
NAM  RNST_SACER/9-99
ASQ  GFEQVRLADLPP-...-EATDTYELIEKGG--P.-YP-YPEDGTVFENR..EGILPDC.AEGYYHEYTVKTPS......--GD--DRGARRFVVGDG-GEYFYTEDHYESFRLTI
NAM  RNS3_STRAU/49-138
ASQ  --GRVCYSALPS-...-QAHDTLDLIDEGG--P.-FP-YSQDGVVFQNR..EGLLPAH.STGYYHEYTVITPG......--SP--TRGARRIITGQQWQEDYYTADHYASFRRVD
NAM  RNSA_STRAU/2-93
ASQ  VSGTVCLSALPP-...-EATDTLNLIASDG--P.-FP-YSQDGVVFQNR..ESVLPTQ.SYGYYHEYTVITPG......--AR--TRGTRRIITGEATQEDYYTGDHYATFSLID
NAM  RNU1_USTSP/7-100
ASQ  NCGGTYYSSTQVN...RAINNAKSGQ-------.--YSSTGYPHTYNNY..EGFDFSDyCDGPYKEYPLKTSS......SGYTGGSPGADRVVYDSNDGTFCGAITHTGASGNNF
NAM  RNT1_TRIHA/4-100
ASQ  TCGKVFYSASAVS...AASNAACNYVRAGS---.-TAGGSTYPHVYNNY..EGFRFKG.LSKPFYEFPILSSG......KTYTGGSPGADRVVINGQC-SIAGIITHTGASGNAF
NAM  RNF2_GIBBA/5-99
ASQ  TCSSKPYSAQQVR...AAANAACQYYQSND---.-TAGSTTYPHTYHNY..EGFDFA-.VNGPYQEYPIRTSG......-VYSGGSPGADRVIINTQC-QFAGAITHTGASGNQF
NAM  RNF1_GIBBA/4-98
ASQ  TCGSTPYSASQVR...AAANAACQYYQSDD---.-TAGSTTYPHTYNNY..EGFDFA-.VNGPYQEFPIRTGG......-VYSGGSPGADRVIINTSC-QYAGAITHTGASGNNF
NAM  RNF1_GIBFU/30-124
ASQ  TCGSTNYSASQVR...AAANAACQYYQNDD---.-TAGSSTYPHTYNNY..EGFDFP-.VDGPYQEFPIKSGG......-VYTGGSPGADRVVINTNC-EYAGAITHTGASGNNF
DSQ  ACTTGTGGTAGCACAAACTACTCCGCCTCCCAAGTCCGC.........GCTGCTGCCAACGCTGCTTGCCAGTACTACCAGAACGACGAC---------...---ACTGCTGGCAGCTCTACCTACCCTCACACTTACAACAACTAC......GAGGGCTTTGACTTTCCT---...GTCGACGGTCCCTACCAAGAGTTCCCCATCAAGAGTGGTGGC..................---GTTTACACGGGTGGCTCTCCCGGTGCTGACCGTGTTGTCATCAACACCAACTGC---GAGTATGCTGGTGCCATTACTCACACTGGTGCTTCCGGCAACAACTTT
TRN  11111111111111111
NAM  RNT1_ASPOR/31-126
ASQ  TCGSNCYSSSDVS...TAQAAGYQLHEDGE---.-TVGSNSYPHKYNNY..EGFDFS-.VSSPYYEWPILSSG......DVYSGGSPGADRVVFNENN-QLAGVITHTGASGNNF
DSQ  ACCTGCGGCAGCAACTGCTACTCCTCCTCCGACGTTTCC.........ACCGCCCAGGCTGCCGGTTACCAGTTGCACGAGGACGGCGAG---------...---ACCGTCGGCAGCAACAGCTACCCGCACAAGTACAACAACTAC......GAGGGCTTCGACTTCTCT---...GTGTCGTCTCCTTACTATGAGTGGCCGATTCTGAGCTCCGGA..................GATGTTTACAGCGGTGGTTCTCCCGGTGCGGACCGTGTGGTGTTCAACGAGAACAAT---CAGTTGGCTGGTGTGATTACTCACACTGGTGCTAGTGGTAACAACTTT
TRN  11011111101111111
NAM  RNPC_PENCH/5-98
ASQ  TCGSVCYTSSAIS...AAQEAGYDLYSAND---.-DVSN--YPHEYRNY..EGFDFP-.VSGTYYEFPILRSG......AVYSGNSPGADRVVFNGND-QLAGVITHTGASGNNF
NAM  RNPB_PENBR/5-98
ASQ  TCGTVCYTSSAIS...SAQAAGYNLYSTND---.-DVSN--YPHEYHNY..EGFDFP-.VSGTYYEFPILKSG......KVYTGSSPGADRVIFNDDD-ELAGVITHTGASGNNF
NAM  RNC2_ASPCL/5-100
ASQ  TCGSHCYSASAVS...DAQSAGYQLESAGQ---.-SVGRSRYPHQYRNY..EGFNFP-.VSGNYYEWPILSSG......STYNGGGPGADRVVFNDND-ELAGLITHTGASGDGF
NAM  RNMS_ASPSA/6-99
ASQ  TCGSTCYWSSDVS...AAKAKGYSLYESGD---.-TIDD--YPHGYHDY..EGFDFP-.VSGTYYEYPIMSDY......DVYTGGSPGADRVIFNGDD-ELAGVITHTGASGDDF
NAM  RNN1_NEUCR/54-149
ASQ  ICGSVCYSSSAIS...AALNKGYSYYEDGA---.-TAGSSSYPHRYNNY..EGFDFP-.TAKPWYEFPILSSG......RVYTGGSPGADRVIFDSH-GNLDMLITHNGASGNNF
DSQ  ATCTGCGGCTCAGTCTGCTACAGCTCTTCTGCCATCTCT.........GCTGCTCTAAACAAGGGCTACTCTTATTACGAGGACGGAGCC---------...---ACCGCCGGAAGCAGCAGCTACCCCCACCGATACAACAACTAC......GAGGGCTTCGACTTCCCC---...ACCGCCAAGCCCTGGTACGAGTTCCCGATCCTGTCGTCCGGC..................CGCGTCTACACTGGCGGCTCTCCCGGTGCTGATCGCGTCATCTTTGACTCCCAC---GGCAACCTGGACATGCTCATCACCCACAATGGTGCTAGCGGTAACAACTTT
TRN  11011111101111101
NAM  RNU2_USTSP/8-109
ASQ  NCGGNVYSNDDIN...TAIQGALDDVANGD---.-RPDN--YPHQYYDEasEDITLCC.GSGPWSEFPLVYNGpyyssrDNYV--SPGPDRVIYQTNTGEFCATVTHTGAASYDG
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