pan•dit

PANDIT Protein and Associated NucleotideDomains with Inferred Trees

FAM  PF00539
PID  Tat
DES  Transactivating regulatory protein (Tat)
IPR  IPR001831
ANO  8
ALN  69
AID  0.363138
APH  (TAT_SIVS4/17-81:0.49639,TAT_HV2BE/29-95:0.35881,(((TAT_EIAVY/14-77:1.12768,TAT_BIV06/17-82:1.06325):0.62944,TAT_HV112/1-68:0.42545):0.38971,(TAT_SIVA1/5-69:0.42143,(TAT_SIVAI/1-64:0.38346,TAT_SIVAM/16-79:0.54555):0.13193):0.21145):0.10801);
ATP  (TAT_SIVS4/17-81,TAT_HV2BE/29-95,(((TAT_EIAVY/14-77,TAT_BIV06/17-82),TAT_HV112/1-68),(TAT_SIVA1/5-69,(TAT_SIVAI/1-64,TAT_SIVAM/16-79))));
ATL  6.29256
DNO  6
DLN  207
DID  0.468337
DPH  ((((TAT_SIVAM/16-79:0.28058,TAT_EIAVY/14-77:0.99578):0.14250,TAT_SIVAI/1-64:0.14779):0.13006,TAT_SIVA1/5-69:0.29446):0.13850,TAT_HV112/1-68:0.46791,TAT_HV2BE/29-95:0.47294);
DTP  ((((TAT_SIVAM/16-79,TAT_EIAVY/14-77),TAT_SIVAI/1-64),TAT_SIVA1/5-69),TAT_HV112/1-68,TAT_HV2BE/29-95);
DTL  3.07052
RID  0.380442
RPH  ((((TAT_SIVA1/5-69:0.51394,TAT_SIVAM/16-79:0.57337):0.12457,TAT_SIVAI/1-64:0.32125):0.25322,TAT_HV2BE/29-95:0.38158):0.44196,TAT_EIAVY/14-77:2.08246,TAT_HV112/1-68:0.26996);
RTP  ((((TAT_SIVA1/5-69,TAT_SIVAM/16-79),TAT_SIVAI/1-64),TAT_HV2BE/29-95),TAT_EIAVY/14-77,TAT_HV112/1-68);
RTL  4.98977
LNK  TAT_BIV06/17-82:P19564:
LNK  TAT_EIAVY/14-77:P20920:M54797
LNK  TAT_HV112/1-68:P04326:M11840
LNK  TAT_HV2BE/29-95:P18098:M30502
LNK  TAT_SIVA1/5-69:P27975:M29975
LNK  TAT_SIVAI/1-64:Q02838:M66437
LNK  TAT_SIVAM/16-79:P36340:M62884
LNK  TAT_SIVS4/17-81:P12513:
AMK  .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  TAT_SIVS4/17-81
ASQ  eHSSSISEVDVPTPESANLEACYNKCYCKRCCYHCQHCFLKKGLGICYEQH--RRRTP--KKTKANPFP
NAM  TAT_HV2BE/29-95
ASQ  aQELAKQGEELLAQLHRPLEPCTNKCYCKRCSFHCQLCFSKKGLGISYERKGRRRRTP--RKTKTPSPS
DSQ  gctCAAGAATTGGCTAAACAAGGAGAAGAACTCCTTGCCCAGCTGCACCGACCCCTAGAGCCATGCACTAACAAATGCTATTGTAAGCGATGCAGTTTCCATTGCCAGCTGTGTTTCTCGAAAAAGGGGCTCGGAATATCATATGAGCGAAAGGGCAGACGAAGAAGGACTCCA------AGGAAAACTAAGACTCCTTCGCCTTCT
TRN  10010101100011001
NAM  TAT_SIVAM/16-79
ASQ  lGQEEIDYKQLLEEYYQPLQACENKCWCKKCCFHCMLCFHKKGLGIRYHVY--RKRGP---GTNKKIPG
DSQ  ttaGGCCAAGAGGAGATAGATTATAAGCAACTGCTAGAAGAGTATTATCAGCCTTTGCAAGCTTGTGAGAATAAATGCTGGTGCAAGAAATGCTGCTTTCATTGTATGCTTTGCTTTCATAAGAAGGGTTTAGGAATAAGGTACCATGTCTAC------AGGAAACGTGGACCA---------GGAACTAATAAGAAGATACCTGGT
TRN  10010101100011010
NAM  TAT_SIVAI/1-64
ASQ  .MDKEEEPHPLLQDLHRPLQPCTNKCYCKKCCYHCELCFLQKGLGVRYHVS--RKRRK--TSTQDNQDP
DSQ  ...ATGGACAAGGAGGAGGAGCCCCACCCCCTCCTCCAGGACTTGCATAGGCCATTACAACCATGTACTAATAAATGCTATTGCAAAAAATGCTGTTATCACTGTGAGCTTTGCTTCCTGCAGAAGGGCTTAGGAGTGCGTTATCATGTCTCT------AGGAAAAGAAGAAAA------ACAAGCACTCAAGATAATCAAGACCCT
TRN  10010101100011010
NAM  TAT_SIVA1/5-69
ASQ  eEDQDVSHQDLIKQYRKPLETCTNKCFCKKCCYHCQFCFLRKGLGITYHAF--RTRRK--KIASADRIP
DSQ  gagGAAGACCAGGACGTGTCCCACCAGGACTTGATTAAACAATACAGGAAACCCCTTGAGACATGTACAAATAAATGCTTTTGCAAAAAATGCTGTTATCATTGCCAATTCTGCTTCTTACGGAAAGGACTAGGTATTACCTATCATGCCTTT------AGGACCAGAAGAAAG------AAGATTGCTTCGGCTGATCGCATTCCT
TRN  10010101110011010
NAM  TAT_HV112/1-68
ASQ  mEPVDPRLEPWKHPGSQPKTACTN-CYCKKCCFHCQVCFITKALGISYGRKKRRQRRRAPQGSQTHQVS
DSQ  atgGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCAAT---TGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTCATCAAGTTTCT
TRN  10010101110011010
NAM  TAT_BIV06/17-82
ASQ  sFGGKPIGWLFWNTCKGPRRDCPH-CCCPICSWHCQLCFLQKNLGVNYGSGPRPRGTR--GKGRRIRRT
NAM  TAT_EIAVY/14-77
ASQ  rIPGTAEENLQKSSGGVPGQNTGG--QEARPNYHCQLCFLR-SLGIDYLDASLRKKNK--QRLKAIQQG
DSQ  aggATCCCCGGGACAGCAGAGGAGAACTTACAGAAGTCTTCTGGAGGTGTTCCTGGCCAGAACACAGGAGGA------CAGGAAGCAAGACCCAACTACCATTGTCAGCTGTGTTTCCTGAGG---TCTCTAGGAATTGATTACCTCGATGCTTCATTAAGGAAGAAGAATAAA------CAAAGACTGAAGGCAATCCAACAAGGA
TRN  10010101100011000
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