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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View summary and phylogenies for PF00416 - Ribosomal_S13)
FAM  PF00416
PID  Ribosomal_S13
DES  Ribosomal protein S13/S18
IPR  IPR001892
ANO  15
ALN  132
AID  0.381343
APH  ((RS18_ARATH/14-142:0.10588,((RS13_SULAC/11-140:0.73083,RS13_HALMA/25-152:0.60460):0.07541,(RT13_ACACA/5-110:1.25310,((((RS13_MYCSP/3-106:0.37998,RR13_ARATH/49-153:0.46145):0.09940,(RS13_MYCBO/3-109:0.39898,RS13_BACST/2-106:0.16510):0.07882):0.12354,RS13_ECOLI/2-107:0.23633):0.29018,((RT13_DAUCA/3-109:0.39357,RT13_MARPO/3-109:0.12860):0.17693,RT13_PROWI/3-109:0.71078):0.29063):0.13594):0.39355):0.38722):0.09410,(RS18_RAT/14-142:0.11189,RS18_YEAST/16-144:0.23909):0.06283,RS18_DROME/14-142:0.15952);
ATP  ((RS18_ARATH/14-142,((RS13_SULAC/11-140,RS13_HALMA/25-152),(RT13_ACACA/5-110,((((RS13_MYCSP/3-106,RR13_ARATH/49-153),(RS13_MYCBO/3-109,RS13_BACST/2-106)),RS13_ECOLI/2-107),((RT13_DAUCA/3-109,RT13_MARPO/3-109),RT13_PROWI/3-109))))),(RS18_RAT/14-142,RS18_YEAST/16-144),RS18_DROME/14-142);
ATL  8.28825
DNO  13
DLN  396
DID  0.452636
DPH  ((RT13_MARPO/3-109:0.25783,RT13_PROWI/3-109:0.46827):0.11549,((RS13_SULAC/11-140:0.48734,(RS13_HALMA/25-152:0.49569,(((RS18_DROME/14-142:0.19777,RS18_RAT/14-142:0.18516):0.06420,RS18_ARATH/14-142:0.19694):0.06052,RS18_YEAST/16-144:0.27563):0.16928):0.18945):0.20201,((RS13_MYCSP/3-106:0.35465,RR13_ARATH/49-153:0.40014):0.11012,(RS13_MYCBO/3-109:0.40339,RS13_ECOLI/2-107:0.15286):0.17857):0.09125):0.14153,RT13_ACACA/5-110:0.70392);
DTP  ((RT13_MARPO/3-109,RT13_PROWI/3-109),((RS13_SULAC/11-140,(RS13_HALMA/25-152,(((RS18_DROME/14-142,RS18_RAT/14-142),RS18_ARATH/14-142),RS18_YEAST/16-144))),((RS13_MYCSP/3-106,RR13_ARATH/49-153),(RS13_MYCBO/3-109,RS13_ECOLI/2-107))),RT13_ACACA/5-110);
DTL  5.90201
RID  0.375643
RPH  ((((((((RS13_MYCSP/3-106:0.38085,RR13_ARATH/49-153:0.43743):0.13741,RS13_MYCBO/3-109:0.38364):0.09142,RS13_ECOLI/2-107:0.25636):0.26371,(RT13_ACACA/5-110:1.31648,(RT13_MARPO/3-109:0.26610,RT13_PROWI/3-109:0.71638):0.22205):0.12750):0.51098,(RS13_SULAC/11-140:0.73320,RS13_HALMA/25-152:0.60516):0.05533):0.40829,RS18_ARATH/14-142:0.10678):0.09458,RS18_DROME/14-142:0.15962):0.06305,RS18_YEAST/16-144:0.24050,RS18_RAT/14-142:0.11164);
RTP  ((((((((RS13_MYCSP/3-106,RR13_ARATH/49-153),RS13_MYCBO/3-109),RS13_ECOLI/2-107),(RT13_ACACA/5-110,(RT13_MARPO/3-109,RT13_PROWI/3-109))),(RS13_SULAC/11-140,RS13_HALMA/25-152)),RS18_ARATH/14-142),RS18_DROME/14-142),RS18_YEAST/16-144,RS18_RAT/14-142);
RTL  7.84754
LNK  RR13_ARATH/49-153:P42732:Z47986
LNK  RS13_BACST/2-106:P15757:
LNK  RS13_ECOLI/2-107:P02369:X02543
LNK  RS13_HALMA/25-152:Q00861:M87833
LNK  RS13_MYCBO/3-109:P45813:BX248346
LNK  RS13_MYCSP/3-106:P38017:L23478
LNK  RS13_SULAC/11-140:P39470:X80194
LNK  RS18_ARATH/14-142:P34788:Z23165
LNK  RS18_DROME/14-142:P41094:L22959
LNK  RS18_RAT/14-142:P62271:X57529
LNK  RS18_YEAST/16-144:P35271:U33007
LNK  RT13_ACACA/5-110:P46760:U12386
LNK  RT13_DAUCA/3-109:P23209:
LNK  RT13_MARPO/3-109:P26872:M68929
LNK  RT13_PROWI/3-109:P46747:U02970
AMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  RT13_PROWI/3-109
ASQ  YIQNTHLNDKKQ--IYQACAQIYGLGHHHCLQICDVLGVSPETRLGMLSTGQHTLLAQIITQN----------------------YDTGSDVRRFTRQNIQR.LVNIHSYRGYRHIQGLPVRGQRSHGNART
DSQ  TATATACAAAATACACACTTAAATGATAAAAAACAA------ATTTATCAAGCATGTGCACAAATTTACGGCTTAGGACATCACCATTGCTTACAAATTTGTGATGTATTAGGTGTTAGCCCAGAAACTCGATTAGGTATGTTATCTACAGGCCAACATACTTTACTTGCACAAATTATAACTCAAAAT------------------------------------------------------------------TATGATACAGGTAGTGATGTTAGACGTTTTACAAGACAAAATATACAACGC...TTAGTAAATATACATAGTTATAGAGGGTATAGACATATTCAAGGCTTACCTGTACGAGGACAAAGGTCACATGGTAATGCGCGTACC
TRN  10010101110011000
NAM  RT13_MARPO/3-109
ASQ  YILGTNLNSNKQ--VKIALTRIFGIGPKKAIQVCDQLGLSDTIKVNKLTKYQFDQILKIISQN----------------------YLVDSELKRVIQRDIKR.LISIGCYRGFRHNAGLPLRGQRTHTNAKT
DSQ  TATATTTTAGGAACTAATTTAAATTCCAATAAACAA------GTAAAAATTGCCTTAACTCGAATCTTTGGAATTGGCCCTAAAAAGGCAATTCAAGTTTGTGATCAATTAGGCCTCAGCGATACCATTAAGGTTAATAAGTTAACTAAGTATCAATTTGACCAAATTCTAAAAATAATAAGTCAAAAT------------------------------------------------------------------TATTTAGTTGATTCAGAATTGAAGAGAGTCATTCAGAGAGACATCAAACGA...TTAATTAGTATTGGTTGTTATCGTGGGTTTCGCCATAATGCAGGATTGCCCTTACGCGGCCAACGAACTCATACTAATGCTAAGACT
TRN  10010101110011000
NAM  RT13_DAUCA/3-109
ASQ  YISGARLVADKQ--VRIALTKMYGIGPKKAIQVCYRLGISGNIKIKELTKYQIDQMEQMIGQD----------------------HVVHWELKRGERADIER.FISISCYRGIRHQDGLPLRGQRTHTNART
NAM  RS13_ECOLI/2-107
ASQ  RIAGINIPDHKH--AVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAK-----------------------FVVEGDLRREISMSIKR.LMDLGCYRGLRHRRGLPVRGQRTKTNART
DSQ  CGTATAGCAGGCATTAACATTCCTGATCATAAGCAT------GCCGTAATCGCATTAACTTCGATTTATGGCGTCGGCAAGACCCGTTCTAAAGCCATCCTGGCTGCAGCGGGTATCGCTGAAGATGTTAAGATCAGTGAGCTGTCTGAAGGACAAATCGACACGCTGCGTGACGAAGTTGCCAAA---------------------------------------------------------------------TTTGTCGTTGAAGGTGATCTGCGCCGTGAAATCAGCATGAGCATCAAGCGC...CTGATGGATCTTGGTTGCTATCGCGGTTTGCGTCATCGTCGTGGTCTCCCGGTTCGCGGTCAGCGTACCAAGACCAACGCACGTACC
TRN  10010101100011010
NAM  RS13_BACST/2-106
ASQ  RIAGVDIPRDKR--VVISLTYIYGIGKPTAQ-ILKEAGVSEDTRVRDLTEEELGRIREIVGR-----------------------LKVEGDLRREVSLNIKR.LMEIGCYRGLRHRRGLPVRGQNTKNNART
NAM  RS13_MYCBO/3-109
ASQ  RLVGVDLPRDKR--MEVALTYIFGIGRTRSNEILAATGIDRDLRTRDLTEEQLIHLRDYIEAN----------------------LKVEGDLRREVQADIRR.KIEIGCYQGLRHRRGMPVRGQRTKTNART
DSQ  CGACTCGTCGGCGTCGACCTGCCGCGCGATAAGCGG------ATGGAGGTCGCCCTGACCTACATCTTTGGCATCGGCCGTACCCGCTCGAACGAAATCCTGGCGGCCACCGGCATTGACCGGGATCTGCGCACCAGAGATCTCACCGAAGAACAGCTGATCCACCTGCGCGACTACATCGAAGCGAAC------------------------------------------------------------------CTGAAGGTGGAGGGTGACCTGCGCCGCGAGGTACAGGCCGACATCCGTCGC...AAGATCGAGATTGGCTGCTATCAGGGGTTGCGGCACCGCCGCGGTATGCCGGTACGCGGCCAGCGGACAAAAACCAACGCGCGGACC
TRN  10010101100011011
NAM  RR13_ARATH/49-153
ASQ  RVGGVEIPANKR--IEYSLQYIHGIGRTRARQILVDLQMEN-KITKDMAEEELIILRDEVSK-----------------------YMIEGDLRRFNALAIKR.LKEIQCYRGVRHIQGLPCRGQRTKNNCRT
DSQ  CGTGTTGGTGGAGTGGAGATTCCGGCTAATAAGAGA------ATTGAGTACTCTCTTCAGTACATTCATGGGATTGGTCGAACTAGGGCTCGTCAGATTCTTGTTGATCTTCAGATGGAGAAC---AAGATTACTAAAGACATGGCTGAGGAAGAACTCATCATTCTTCGTGATGAAGTCTCCAAG---------------------------------------------------------------------TACATGATTGAGGGTGATCTGAGGAGGTTCAATGCTCTTGCAATCAAGAGG...TTGAAGGAGATCCAGTGTTACCGTGGGGTAAGGCACATCCAAGGGCTGCCATGTCGGGGACAGAGAACCAAGAACAACTGCAGGACT
TRN  10010101100011011
NAM  RS13_MYCSP/3-106
ASQ  RVLNIEIPNNKK--ARISLTYIFGIGPTIAKQILADANVDGEKRVKELTEEELTRIRDEAKK-----------------------YTTEGDLKREINLNIKR.LMEIKSYRVIRHRKDTCKR--STKKNART
DSQ  AGAGTTTTAAATATAGAAATTCCAAATAATAAAAAA------GCTCGTATTTCTCTAACTTATATTTTTGGTATTGGCCCAACAATTGCTAAACAAATTTTGGCTGATGCTAATGTAGATGGGGAAAAAAGAGTTAAAGAATTAACAGAAGAAGAATTAACACGTATCAGAGATGAAGCTAAAAAA---------------------------------------------------------------------TATACTACCGAAGGTGATTTAAAAAGAGAAATTAACTTAAACATTAAGAGA...TTAATGGAAATTAAATCATACCGTGTTATTAGACATAGAAAAGATACCTGTAAGAGG------TCAACAAAGAAAAATGCAAGAACA
TRN  10010101110011000
NAM  RS18_YEAST/16-144
ASQ  RLLNTNVDGNIK--IVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLER.LKKIRAHRGIRHFWGLRVRGQHTKTTGRR
DSQ  CGTTTGTTGAACACTAACGTTGACGGTAACATTAAG------ATCGTTTACGCTTTGACCACTATCAAGGGTGTTGGTCGTCGTTACTCCAACTTGGTCTGTAAGAAGGCTGATGTTGATTTACACAAGAGAGCTGGTGAATTGACCCAAGAAGAATTGGAAAGAATTGTTCAAATTATGCAAAACCCAACTCACTACAAAATCCCAGCTTGGTTCTTGAACCGTCAAAATGACATCACTGATGGTAAGGACTACCACACTTTGGCTAACAACGTCGAATCCAAATTGAGAGATGACTTGGAAAGA...TTAAAGAAAATCAGAGCTCATCGTGGTATCAGACACTTCTGGGGTTTGCGTGTTAGAGGTCAACACACCAAGACCACTGGTAGAAGA
TRN  10110101110011010
NAM  RS18_RAT/14-142
ASQ  RVLNTNIDGRRK--IAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLER.LKKIRAHRGLRHFWGLRVRGQHTKTTGRR
DSQ  CGAGTACTCAACACCAACATCGATGGGCGGCGGAAA------ATAGCCTTCGCTATCACTGCCATTAAGGGTGTGGGGCGGAGATACGCTCATGTGGTGTTGAGGAAAGCAGACATTGACCTCACCAAGAGGGCTGGGGAGCTCACGGAGGACGAGGTGGAGCGTGTGATCACCATCATGCAGAACCCACGACAATACAAGATCCCTGACTGGTTCTTGAACAGACAGAAGGACGTGAAGGATGGGAAGTATAGCCAGGTTCTGGCCAACGGTCTAGACAACAAGCTGCGTGAGGACCTGGAGCGG...CTGAAGAAAATCCGAGCCCATAGAGGACTGCGCCACTTTTGGGGCCTTCGTGTCCGGGGTCAGCACACCAAGACCACTGGCCGCAGG
TRN  10010101100011011
NAM  RS18_ARATH/14-142
ASQ  RVLNTNVDGKQK--IMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLER.LKKIRNHRGLRHYWGLRVRGQHTKTTGRR
DSQ  CGTGTGCTCAATACTAATGTCGATGGGAAGCAAAAA------ATTATGTTTGCTTTGACCTCAATCAAGGGTATTGGAAGGCGATTGGCTAACATTGTGTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGAGAACTAAGTGCTGCTGAGATTGATAACCTCATGACAATCGTTGCTAACCCTCGCCAGTTCAAGATCCCAGACTGGTTTCTTAACAGACAAAAGGATTACAAGGATGGGAAATACTCCCAAGTTGTTTCCAATGCTCTTGACATGAAGTTGAGAGATGATCTTGAGCGT...CTCAAGAAGATCAGAAACCATCGTGGTCTGAGGCACTACTGGGGTCTCCGTGTACGTGGACAGCACACCAAAACCACCGGACGCCGT
TRN  10010101100011001
NAM  RS18_DROME/14-142
ASQ  RIMNTNIDGKRK--VGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLER.LKKIRSHRGLRHYWGLRVRGQHTKTTGRR
DSQ  CGTATCATGAATACGAACATCGACGGCAAGCGCAAG------GTTGGCATCGCCATGACCGCCATCAAGGGAGTGGGTCGCCGCTACTCCAACATTGTGCTGAAGAAGGCCGATGTCGATCTTACCAAGCGCGCCGGTGAGTGCACCGAGGAGGAGGTCGACAAGGTGGTGACCATCATCTCGAACCCTCTGCAGTACAAGGTGCCCAACTGGTTCCTCAACAGGCAGAAGGACATCATCGATGGCAAGTACTGGCAGCTGACCTCCTCCAACTTGGACTCGAAGCTGCGTGACGATCTGGAGCGT...CTGAAGAAGATCCGCTCCCACCGTGGGCTGCGTCACTACTGGGGCCTCCGTGTGCGTGGTCAGCACACCAAGACCACCGGTCGTCGT
TRN  10010101100011011
NAM  RS13_HALMA/25-152
ASQ  RIGQTDLDGTKS--VERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVERVEN-FADDVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINR.MKMIDSYRGVRHKRGQKVRGQRTKSTGRT
DSQ  CGTATCGGACAGACAGACCTCGACGGGACGAAATCC------GTCGAGCGAGCACTGACAGAACTGAACGGTATCGGCCACCGGGCCGCCCGAATTATCGCCCAGAAGGCGGACGTCGACCGGCGCGCTGTCTTCGGCAAGCTCGACGACGACGTCATCGAGCGCGTCGTCGAGCGCGTCGAGAAC---TTCGCCGACGATGTGCCTGAGTGGATGACCAACCACCAGAAGGACTACTTCACTGGTGAGACCACCCACGAGACCGGCAACGACCTCCAGCTTACCCGCCGGCAGGACATCAACCGC...ATGAAGATGATCGATTCCTACCGCGGTGTCCGCCACAAGCGCGGCCAGAAGGTCCGTGGACAGCGTACCAAGTCCACCGGCCGGACG
TRN  11011101101011011
NAM  RS13_SULAC/11-140
ASQ  RLFGQDVDGTMK--LPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFLQLEMILRgRGRSRSWRGVRHSLGLKVRGQRTRTTGRT
DSQ  AGGCTCTTTGGTCAAGACGTAGATGGAACTATGAAG------CTTCCTTATGCCTTAGCCATGATTAAGGGTATAGGGTATAATACTGCTATGATAATTATTCGTAAATTGAATCTTGATAAGGATAAACGATTAGGTGAAATATCAGACGAGGACATAAAGAAGATTGAGAATTTGTTAAACAACAAAATTATTCCGGAAAGCCCTAACTGGATCTATAACAGACAGAAGGATTACGAGTCAGGAGCCGATATGCATTTGGTGACCTCTGATTTGATCTTTTTACAGTTAGAAATGATATTGAGAgggAGAGGGAGAAGTAGGAGCTGGAGAGGTGTGAGACATAGTTTAGGTCTCAAGGTCAGAGGTCAGAGAACTAGAACTACTGGAAGAACT
TRN  10010101110011000
NAM  RT13_ACACA/5-110
ASQ  QNFNTFVSDNKNKNIFSALKDIHGVNLKKINKMGLVMGLDKFEKVSSMNFELFSLIKKQAIF-------------------------FYNLEENKIFNNVNK.KKKIKNYTGMRHILKLPVRGQRTHTNAKT
DSQ  CAAAATTTTAATACATTTGTATCAGATAACAAAAATAAAAACATTTTTAGCGCATTGAAAGATATTCACGGTGTAAATTTAAAAAAAATCAATAAAATGGGTTTGGTAATGGGTCTTGACAAGTTTGAGAAAGTTAGCAGTATGAATTTTGAACTTTTTTCTTTAATAAAAAAACAGGCTATTTTT---------------------------------------------------------------------------TTTTATAACTTAGAAGAAAATAAAATATTTAATAACGTTAACAAA...AAGAAAAAAATAAAAAATTATACAGGAATGCGTCATATATTAAAACTTCCGGTCAGGGGCCAAAGAACCCACACCAATGCTAAAACG
TRN  10010101110011000
//